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[diderot] Annotation of /branches/charisee/TODO
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Annotation of /branches/charisee/TODO

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Revision 1257 - (view) (download)
Original Path: trunk/TODO

1 : glk 1162 NOTE: GLK's approximate ranking of 8 most important tagged with
2 : jhr 1115 [GLK:1], [GLK:2], ...
3 :    
4 : glk 1156 ========================
5 :     SHORT TERM ============= (*needed* for streamlines & tractography)
6 :     ========================
7 : jhr 1115
8 : jhr 1257 Remove CL from compiler
9 :    
10 : glk 1162 [GLK:3] Add sequence types (needed for evals & evecs)
11 : jhr 1115 syntax
12 :     types: ty '{' INT '}'
13 :     value construction: '{' e1 ',' … ',' en '}'
14 :     indexing: e '{' e '}'
15 :    
16 : glk 1162 [GLK:4] evals & evecs for symmetric tensor[2,2] and
17 :     tensor[3,3] (requires sequences)
18 :    
19 : glk 1156 ability to emit/track/record variables into dynamically re-sized
20 :     runtime buffer
21 : jhr 1115
22 : glk 1156 tensor fields: convolution on general tensor images
23 : jhr 1115
24 : glk 1156 ========================
25 : glk 1162 SHORT-ISH TERM ========= (to make using Diderot less annoying to
26 :     ======================== program in, and slow to execute)
27 : jhr 1115
28 : jhr 1246 value-numbering optimization [DONE]
29 : jhr 1115
30 : glk 1167 Allow ".ddro" file extensions in addition to ".diderot"
31 :    
32 : glk 1204 Be able to output values of type tensor[2,2] and tensor[3,3];
33 :     (currently only scalars & vectors). Want to add some regression tests
34 :     based on this and currently can't
35 : glk 1167
36 : glk 1162 [GLK:1] Add a clamp function, which takes three arguments; either
37 :     three scalars:
38 :     clamp(lo, hi, x) = max(lo, min(hi, x))
39 :     or three vectors of the same size:
40 :     clamp(lo, hi, [x,y]) = [max(lo[0], min(hi[0], x)),
41 :     max(lo[1], min(hi[1], y))]
42 :     This would be useful in many current Diderot programs.
43 :     One question: clamp(x, lo, hi) is the argument order used in OpenCL
44 :     and other places, but clamp(lo, hi, x) is much more consistent with
45 :     lerp(lo, hi, x), hence GLK's preference
46 : jhr 1115
47 : glk 1162 [GLK:2] Proper handling of stabilize method
48 :    
49 :     allow "*" to represent "modulate": per-component multiplication of
50 :     vectors, and vectors only (not tensors of order 2 or higher). Once
51 :     sequences are implemented this should be removed: the operation is not
52 :     invariant WRT basis so it is not a legit vector computation.
53 :    
54 :     implicit type promotion of integers to reals where reals are
55 :     required (e.g. not exponentiation "^")
56 :    
57 :     [GLK:5] Save Diderot output to nrrd, instead of "mip.txt"
58 : jhr 1115 For grid of strands, save to similarly-shaped array
59 :     For list of strands, save to long 1-D (or 2-D for non-scalar output) list
60 :     For ragged things (like tractography output), will need to save both
61 :     complete list of values, as well as list of start indices and lengths
62 :     to index into complete list
63 :    
64 : glk 1162 [GLK:6] Use of Teem's "hest" command-line parser for getting
65 : glk 1212 any "input" variables that are not defined in the source file.
66 : jhr 1115
67 : glk 1162 [GLK:7] ability to declare a field so that probe positions are
68 : glk 1120 *always* "inside"; with various ways of mapping the known image values
69 :     to non-existant index locations. One possible syntax emphasizes that
70 :     there is a index mapping function that logically precedes convolution:
71 : glk 1162 F = bspln3 ⊛ (img ◦ clamp)
72 : glk 1120 F = bspln3 ⊛ (img ◦ repeat)
73 :     F = bspln3 ⊛ (img ◦ mirror)
74 :     where "◦" or "∘" is used to indicate function composition
75 : jhr 1115
76 : glk 1162 Level of differentiability in field type should be statement about how
77 :     much differentiation the program *needs*, rather than what the kernel
78 :     *provides*. The needed differentiability can be less than or equal to
79 :     the provided differentiability.
80 :    
81 : glk 1156 Use ∇⊗ etc. syntax
82 :     syntax [DONE]
83 :     typechecking
84 :     IL and codegen
85 : jhr 1115
86 : glk 1156 Add type aliases for color types
87 :     rgb = real{3}
88 :     rgba = real{4}
89 : jhr 1115
90 :     ==============================
91 : glk 1156 MEDIUM TERM ================== (*needed* for particles)
92 : jhr 1115 ==============================
93 :    
94 :     run-time birth of strands
95 :    
96 :     "initially" supports lists
97 :    
98 : glk 1254 "initially" supports lists of positions output from different
99 :     initalization Diderot program (or output from the same program;
100 :     e.g. using output of iso2d.diderot for one isovalue to seed the input
101 :     to another invocation of the same program)
102 : jhr 1115
103 : glk 1156 Communication between strands: they have to be able to learn each
104 :     other's state (at the previous iteration). Early version of this can
105 :     have the network of neighbors be completely static (for running one
106 :     strand/pixel image computations). Later version with strands moving
107 :     through the domain will require some spatial data structure to
108 :     optimize discovery of neighbors.
109 : jhr 1115
110 : glk 1156 ============================
111 :     MEDIUM-ISH TERM ============ (to make Diderot more useful/effective)
112 :     ============================
113 : jhr 1115
114 : glk 1156 Python/ctypes interface to run-time
115 : jhr 1115
116 : glk 1156 support for Python interop and GUI
117 : jhr 1115
118 : glk 1162 Allow integer exponentiation ("^2") to apply to square matrices,
119 :     to represent repeated matrix multiplication
120 :    
121 : glk 1156 Alow X *= Y, X /= Y, X += Y, X -= Y to mean what they do in C,
122 :     provided that X*Y, X/Y, X+Y, X-Y are already supported.
123 :     Nearly every Diderot program would be simplified by this.
124 : jhr 1115
125 : glk 1156 Put small 1-D and 2-D fields, when reconstructed specifically by tent
126 :     and when differentiation is not needed, into faster texture buffers.
127 :     test/illust-vr.diderot is good example of program that uses multiple
128 :     such 1-D fields basically as lookup-table-based function evaluation
129 :    
130 :     expand trace in mid to low translation
131 :    
132 :     extend norm (|exp|) to all tensor types [DONE for vectors and matrices]
133 :    
134 :     determinant ("det") for tensor[3,3]
135 :    
136 : jhr 1115 add ":" for tensor dot product (contracts out two indices
137 :     instead of one like •), valid for all pairs of tensors with
138 :     at least two indices
139 :    
140 : glk 1156 test/uninit.diderot:
141 :     documents need for better compiler error messages when output variables
142 :     are not initialized; the current messages are very cryptic
143 : jhr 1115
144 :     want: warnings when "D" (reserved for differentiation) is declared as
145 :     a variable name (get confusing error messages now)
146 :    
147 : glk 1156 ==============================
148 :     LONG TERM ==================== (make Diderot more interesting/attractive from
149 :     ============================== a research standpoint)
150 : jhr 1115
151 : glk 1156 IL support for higher-order tensor values (matrices, etc).
152 :     tensor construction [DONE]
153 :     tensor indexing [DONE]
154 :     tensor slicing
155 :     verify that hessians work correctly [DONE]
156 : jhr 1115
157 : glk 1156 Better handling of variables that determines the scope of a variable
158 :     based on its actual use, instead of where the user defined it. So,
159 :     for example, we should lift strand-invariant variables to global
160 :     scope. Also prune out useless variables, which should include field
161 :     variables after the translation to mid-il.
162 :    
163 :     test/vr-kcomp2.diderot: Add support for code like
164 :     (F1 if x else F2)@pos
165 :     This will require duplication of the continuation of the conditional
166 :     (but we should only duplicate over the live-range of the result of the
167 :     conditional.
168 :    
169 : glk 1162 [GLK:8] Want: non-trivial field expressions & functions.
170 :     scalar fields from scalar fields F and G:
171 :     field#0(2)[] X = (sin(F) + 1.0)/2;
172 :     field#0(2)[] X = F*G;
173 :     scalar field of vector field magnitude:
174 : glk 1156 image(2)[2] Vimg = load(...);
175 :     field#0(2)[] Vlen = |Vimg ⊛ bspln3|;
176 : glk 1162 field of normalized vectors (for LIC and vector field feature extraction)
177 :     field#2(2)[2] F = ...
178 :     field#0(2)[2] V = normalize(F);
179 :     scalar field of gradient magnitude (for edge detection))
180 : glk 1156 field#2(2)[] F = Fimg ⊛ bspln3;
181 :     field#0(2)[] Gmag = |∇F|;
182 : glk 1162 scalar field of squared gradient magnitude (simpler to differentiate):
183 : glk 1156 field#2(2)[] F = Fimg ⊛ bspln3;
184 :     field#0(2)[] Gmsq = ∇F•∇F;
185 : glk 1162 There is value in having these, even if the differentiation of them is
186 :     not supported (hence the indication of "field#0" for these above)
187 : glk 1156
188 : jhr 1195 Introduce region types (syntax region(d), where d is the dimension of the
189 :     region. One useful operator would be
190 :     dom : field#k(d)[s] -> region(d)
191 :     Then the inside test could be written as
192 :     pos ∈ dom(F)
193 :     We could further extend this approach to allow geometric definitions of
194 :     regions. It might also be useful to do inside tests in world space,
195 :     instead of image space.
196 :    
197 : glk 1162 co- vs contra- index distinction
198 : glk 1156
199 : glk 1162 Permit field composition:
200 : glk 1156 field#2(3)[3] warp = bspln3 ⊛ warpData;
201 :     field#2(3)[] F = bspln3 ⊛ img;
202 :     field#2(3)[] Fwarp = F ◦ warp;
203 : glk 1162 So Fwarp(x) = F(warp(X)). Chain rule can be used for differentation.
204 :     This will be instrumental for expressing non-rigid registration
205 :     methods (but those will require co-vs-contra index distinction)
206 : glk 1156
207 : glk 1155 Allow the convolution to be specified either as a single 1D kernel
208 :     (as we have it now):
209 :     field#2(3)[] F = bspln3 ⊛ img;
210 :     or, as a tensor product of kernels, one for each axis, e.g.
211 :     field#0(3)[] F = (bspln3 ⊗ bspln3 ⊗ tent) ⊛ img;
212 : glk 1212 This is especially important for things like time-varying fields
213 :     and the use of scale-space in field visualization: one axis of the
214 :     must be convolved with a different kernel during probing.
215 :     What is very unclear is how, in such cases, we should notate the
216 :     gradient, when we only want to differentiate with respect to some
217 :     subset of the axes. One ambitious idea would be:
218 : glk 1162 field#0(3)[] Ft = (bspln3 ⊗ bspln3 ⊗ tent) ⊛ img; // 2D time-varying field
219 : glk 1204 field#0(2)[] F = lambda([x,y], Ft([x,y,42.0])) // restriction to time=42.0
220 :     vec2 grad = ∇F([x,y]); // 2D gradient
221 : glk 1155
222 : glk 1204 Tensors of order 3 (e.g. gradients of diffusion tensor fields, or
223 :     hessians of vector fields) and order 4 (e.g. Hessians of diffusion
224 :     tensor fields).
225 :    
226 : glk 1162 representation of tensor symmetry
227 : jhr 1115 (have to identify the group of index permutations that are symmetries)
228 :    
229 :     dot works on all tensors
230 :    
231 :     outer works on all tensors
232 :    
233 : glk 1204 Help for debugging Diderot programs: need to be able to uniquely
234 :     identify strands, and for particular strands that are known to behave
235 :     badly, do something like printf or other logging of their computations
236 :     and updates.
237 :    
238 :     Permit writing dimensionally general code: Have some statement of the
239 :     dimension of the world "W" (or have it be learned from one particular
240 :     field of interest), and then able to write "vec" instead of
241 :     "vec2/vec3", and perhaps "tensor[W,W]" instead of
242 :     "tensor[2,2]/tensor[3,3]"
243 :    
244 :     Traits: all things things that have boilerplate code (especially
245 :     volume rendering) should be expressed in terms of the unique
246 :     computational core. Different kinds of streamline/tractography
247 :     computation will be another example, as well as particle systems.
248 :    
249 : jhr 1115 Einstein summation notation
250 :    
251 :     "tensor comprehension" (like list comprehension)
252 :    
253 : glk 1204 Fields coming from different sources of data:
254 :     * triangular or tetrahedral meshes over 2D or 3D domains (of the
255 :     source produced by finite-element codes; these will come with their
256 :     own specialized kinds of reconstruction kernels, called "basis
257 :     functions" in this context)
258 :     * Large point clouds, with some radial basis function around each point,
259 :     which will be tuned by parameters of the point (at least one parameter
260 :     giving some notion of radius)
261 :    
262 : jhr 1115 ======================
263 :     BUGS =================
264 :     ======================
265 :    
266 :     test/zslice2.diderot:
267 :     // HEY (bug) bspln5 leads to problems ...
268 :     // uncaught exception Size [size]
269 :     // raised at c-target/c-target.sml:47.15-47.19
270 :     //field#4(3)[] F = img ⊛ bspln5;

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