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4 :     @STRING{AJNR = {American Journal of Neuroradiology}}
5 :    
6 :     @STRING{ANYAS = {Annals of the New York Academy of Sciences}}
7 :    
8 :     @STRING{CGnA = {IEEE Computer Graphics and Applications}}
9 :    
10 :     @STRING{CVPR = {Proceedings CVPR}}
11 :    
12 :     @STRING{CVPR-long = {Proceedings IEEE Computer Vision and Pattern Recognition (CVPR)}}
13 :    
14 :     @STRING{IJCV = {International Journal of Computer Vision}}
15 :    
16 :     @STRING{INRIA = {Institut National de Recharche en Informatique et en Automatique}}
17 :    
18 :     @STRING{IPMI = {Proceedings IPMI}}
19 :    
20 :     @STRING{IPMI-long = {Proceedings Information Processing in Medical Imaging (IPMI)}}
21 :    
22 :     @STRING{ISBI = {Proceedings ISBI}}
23 :    
24 :     @STRING{ISBI-long = {Proceedings IEEE International Symposium on Biomedical Imaging (ISBI)}}
25 :    
26 :     @STRING{ISMRM = {Proceedings ISMRM}}
27 :    
28 :     @STRING{ISMRM-long = {Proceedings International Society for Magnetic Resonance in Medicine
29 :     (ISMRM)}}
30 :    
31 :     @STRING{JMIV = {Journal of Mathematical Imaging and Vision}}
32 :    
33 :     @STRING{JMR = {Journal of Magnetic Resonance}}
34 :    
35 :     @STRING{JMR-B = {Journal of Magnetic Resonance, Series B}}
36 :    
37 :     @STRING{JMRI = {Journal of Magnetic Resonance Imaging}}
38 :    
39 :     @STRING{MedIA = {Medical Image Analysis}}
40 :    
41 :     @STRING{MICCAI = {Proceedings MICCAI}}
42 :    
43 :     @STRING{MICCAI-long = {International Conference on Medical Image Computing and Computer-Assisted
44 :     Intervention (MICCAI)}}
45 :    
46 :     @STRING{MRM = {Magnetic Resonance in Medicine}}
47 :    
48 :     @STRING{NI = {NeuroImage}}
49 :    
50 :     @STRING{NMRB = {Nuclear Magnetic Resonance in Biomedicine}}
51 :    
52 :     @STRING{PAMI = {IEEE Transactions on Pattern Analysis and Machine Intelligence}}
53 :    
54 :     @STRING{PNAS = {Proc. National Academy of Sciences}}
55 :    
56 :     @STRING{SIGGRAPH = {Computer Graphics (Proc. ACM SIGGRAPH)}}
57 :    
58 :     @STRING{SimVis = {Proceedings Simulation und Visualisierung (SimVis)}}
59 :    
60 :     @STRING{TIP = {IEEE Trans. on Image Processing}}
61 :    
62 :     @STRING{TMI = {IEEE Trans. on Medical Imaging}}
63 :    
64 :     @STRING{TOG = {ACM Trans. on Graphics}}
65 :    
66 :     @STRING{TVCG = {IEEE Trans. on Visualization and Computer Graphics}}
67 :    
68 :     @STRING{VIS = {Proc. IEEE Visualization}}
69 :    
70 :     @STRING{WSCG = {Winter School of Computer Graphics}}
71 :    
72 :     @ARTICLE{GLK:Ozarslan2005,
73 :     author = {Evren {\"O}zarslan and Baba C. Vemuri and Thomas H. Mareci},
74 :     title = {Generalized Scalar Measures for Diffusion MRI Using Trace, Variance,
75 :     and Entropy},
76 :     journal = MRM,
77 :     year = {2005},
78 :     volume = {53},
79 :     pages = {866--876},
80 :     file = {ozarslanMRM05GeneralizedScalarMeasuresForDiffusionMRIUsingTraceVarianceAndEntropy.pdf:ozarslanMRM05GeneralizedScalarMeasuresForDiffusionMRIUsingTraceVarianceAndEntropy.pdf:PDF},
81 :     owner = {gk},
82 :     timestamp = {2007.07.16}
83 :     }
84 :    
85 :     @ARTICLE{GLK:Ozarslan2007,
86 :     author = {Evren \"{O}zarslan and Uri Nevo and Peter J. Basser},
87 :     title = {Anisotropy Induced by Macroscopic Boundaries: {S}urface-Normal Mapping
88 :     using Diffusion-Weighted Imaging},
89 :     journal = {Biophysical Journal},
90 :     year = {2007},
91 :     volume = {0},
92 :     pages = {0},
93 :     doi = {10.1529/biophysj.107.124081},
94 :     file = {ozarslan07AnisotropyInducedByMacroscopicBoundaries.pdf:ozarslan07AnisotropyInducedByMacroscopicBoundaries.pdf:PDF},
95 :     keywords = {physics},
96 :     owner = {gk},
97 :     timestamp = {2008.04.05}
98 :     }
99 :    
100 :     @INPROCEEDINGS{GLK:Akers2004,
101 :     author = {David Akers and Anthony Sherbondy and Rachel Mackenzie and Robert
102 :     Dougherty and Brian Wandell},
103 :     title = {Exploration of the Brain's White Matter Pathways with Dynamic Queries},
104 :     booktitle = VIS # { 2004},
105 :     year = {2004},
106 :     pages = {377--384},
107 :     month = {October},
108 :     file = {akersVIS04ExplorationOfTheBrainsWhiteMatterPathwaysWithDynamicQueries.pdf:akersVIS04ExplorationOfTheBrainsWhiteMatterPathwaysWithDynamicQueries.pdf:PDF},
109 :     owner = {gk},
110 :     timestamp = {2007.07.11}
111 :     }
112 :    
113 :     @INPROCEEDINGS{GLK:Akiba2007,
114 :     author = {Hiroshi Akiba and Kwan-Liu Ma},
115 :     title = {A Tri-Space Visualization Interface for Analyzing Time-Varying Multivariate
116 :     Volume Data},
117 :     booktitle = {Proc. Eurographics/IEEE-VGTC Symp. on Visualization},
118 :     year = {2007},
119 :     pages = {115--122},
120 :     doi = {10.2312/VisSym/EuroVis07/115-122},
121 :     file = {akiba07ATriSpaceVisualizationInterfaceForAnalyzingTimeVaryingMultivariateVolumeData.pdf:akiba07ATriSpaceVisualizationInterfaceForAnalyzingTimeVaryingMultivariateVolumeData.pdf:PDF},
122 :     owner = {gk},
123 :     timestamp = {2008.05.02}
124 :     }
125 :    
126 :     @ARTICLE{GLK:Aldroubi1999,
127 :     author = {Akram Aldroubi and Peter Basser},
128 :     title = {Reconstruction of vector and tensor fields from sampled discrete
129 :     data},
130 :     journal = {Contemporary Mathematics},
131 :     year = {1999},
132 :     volume = {247},
133 :     pages = {1--15},
134 :     file = {aldroubi99ReconstructionOfVectorAndTensorFieldsFromSampledDiscreteData.pdf:aldroubi99ReconstructionOfVectorAndTensorFieldsFromSampledDiscreteData.pdf:PDF},
135 :     owner = {gk},
136 :     timestamp = {2007.07.06}
137 :     }
138 :    
139 :     @ARTICLE{GLK:Alexa2003,
140 :     author = {Marc Alexa and Johannes Behr and Daniel Cohen-Or and Shachar Fleishman
141 :     and David Levin and Claudio T Silva},
142 :     title = {Computing and Rendering Point Set Surfaces},
143 :     journal = TVCG,
144 :     year = {2003},
145 :     volume = {9},
146 :     pages = {3--15},
147 :     number = {1},
148 :     month = {Jan},
149 :     file = {alexaTVCG03ComputingAndRenderingPointSetSurfaces.pdf:alexaTVCG03ComputingAndRenderingPointSetSurfaces.pdf:PDF},
150 :     owner = {gk},
151 :     timestamp = {2007.07.11}
152 :     }
153 :    
154 :     @ARTICLE{GLK:aalexanderMRM00,
155 :     author = {A L Alexander and K Hasan and G Kindlmann and D L Parker and J S
156 :     Tsurada},
157 :     title = {A Geometric Analysis of Diffusion Tensor Measurements of the Human
158 :     Brain},
159 :     journal = MRM,
160 :     year = {2000},
161 :     volume = {44},
162 :     pages = {283--291},
163 :     file = {aalexanderMRM00GeometricAnalysisOfDTMeasurementsOfTheHumanBrain.pdf:aalexanderMRM00GeometricAnalysisOfDTMeasurementsOfTheHumanBrain.pdf:PDF},
164 :     owner = {gk},
165 :     timestamp = {2007.07.11}
166 :     }
167 :    
168 :     @ARTICLE{GLK:aalexanderMRM01,
169 :     author = {Andrew L. Alexander and Khader M. Hasan and Mariana Lazar and Jay
170 :     S. Tsuruda and Dennis L. Parker},
171 :     title = {Analysis of Partial Volume Effects in Diffusion-Tensor {MRI}},
172 :     journal = MRM,
173 :     year = {2001},
174 :     volume = {45},
175 :     pages = {770--780},
176 :     file = {aalexanderMRM01AnalysisOfPartialVolumeEffectsInDTMRI.pdf:aalexanderMRM01AnalysisOfPartialVolumeEffectsInDTMRI.pdf:PDF},
177 :     owner = {gk},
178 :     timestamp = {2007.07.11}
179 :     }
180 :    
181 :     @INPROCEEDINGS{GLK:alexanderCPVR99,
182 :     author = {Daniel Alexander and James Gee and Ruzena Bajcsy},
183 :     title = {Elastic Matching of Diffusion Tensor {MRI}s},
184 :     booktitle = {CVPR},
185 :     year = {1999},
186 :     pages = {1244--1249},
187 :     file = {alexanderCVPR99ElasticMatchingOfDiffusionTensorMRIs.pdf:alexanderCVPR99ElasticMatchingOfDiffusionTensorMRIs.pdf:PDF},
188 :     owner = {gk},
189 :     timestamp = {2007.07.30}
190 :     }
191 :    
192 :     @INPROCEEDINGS{GLK:dalexanderBMVC99,
193 :     author = {Daniel Alexander and James Gee and Ruzena Bajcsy},
194 :     title = {Similarity Measures for Matching Diffusion Tensor Images},
195 :     booktitle = {Proceedings British Machine Vision Conference (BMVC)},
196 :     year = {1999},
197 :     pages = {93--102},
198 :     address = {Nottingham, Great Britain},
199 :     month = {September},
200 :     file = {alexanderBMVC99SimilarityMeasuresForMatchingDiffusionTensorImages.pdf:alexanderBMVC99SimilarityMeasuresForMatchingDiffusionTensorImages.pdf:PDF},
201 :     owner = {gk},
202 :     timestamp = {2007.07.30}
203 :     }
204 :    
205 :     @ARTICLE{GLK:Alexander2005,
206 :     author = {Daniel C. Alexander and Gareth J. Barker},
207 :     title = {Optimal imaging parameters for fiber-orientation estimation in diffusion
208 :     {MRI}},
209 :     journal = NI,
210 :     year = {2005},
211 :     volume = {27},
212 :     pages = {357--367},
213 :     number = {2},
214 :     month = {Aug},
215 :     doi = {10.1016/j.neuroimage.2005.04.008},
216 :     owner = {gk},
217 :     timestamp = {2008.07.15}
218 :     }
219 :    
220 :     @ARTICLE{GLK:dalexanderMRM02,
221 :     author = {D C Alexander and G J Barker and S R Arridge},
222 :     title = {Detection and Modeling of Non-Gaussian Apparent Diffusion Coefficients
223 :     Profiles in Human Brain Data},
224 :     journal = MRM,
225 :     year = {2002},
226 :     volume = {48},
227 :     pages = {331--340},
228 :     file = {dcalexanderMRM02DetectionAndModelingOfNonGaussianApparentDiffusionCoefficientsProfiles_.pdf:dcalexanderMRM02DetectionAndModelingOfNonGaussianApparentDiffusionCoefficientsProfiles_.pdf:PDF},
229 :     keywords = {post-tensor},
230 :     owner = {gk},
231 :     timestamp = {2007.07.11}
232 :     }
233 :    
234 :     @ARTICLE{GLK:dalexander01,
235 :     author = {D C Alexander and C Pierpaoli and P J Basser and J C Gee},
236 :     title = {Spatial Transformations on Diffusion Tensor Magnetic Resonance Images},
237 :     journal = TMI,
238 :     year = {2001},
239 :     volume = {20},
240 :     pages = {1131--1139},
241 :     number = {11},
242 :     month = {November},
243 :     file = {dAlexanderTMI01SpatialTransformationsOfDTMRI.pdf:dAlexanderTMI01SpatialTransformationsOfDTMRI.pdf:PDF},
244 :     owner = {gk},
245 :     timestamp = {2007.07.30}
246 :     }
247 :    
248 :     @INPROCEEDINGS{GLK:Amenta2004,
249 :     author = {Nina Amenta and Yong Joo Kil},
250 :     title = {Defining point-set surfaces},
251 :     booktitle = SIGGRAPH # { 2004},
252 :     year = {2004},
253 :     pages = {264--270},
254 :     file = {amentaSIGGRAPH04DefiningPointSetSurfaces.pdf:amentaSIGGRAPH04DefiningPointSetSurfaces.pdf:PDF},
255 :     journal = {Computer Graphics},
256 :     owner = {gk},
257 :     timestamp = {2007.07.11}
258 :     }
259 :    
260 :     @ARTICLE{GLK:anderson01,
261 :     author = {Adam W. Anderson},
262 :     title = {Theoretical Analysis of the Effects of Noise on Diffusion Tensor
263 :     Imaging},
264 :     journal = MRM,
265 :     year = {2001},
266 :     volume = {46},
267 :     pages = {1174--1188},
268 :     file = {andersonMRM01TheoreticalAnalysisOfTheEffectsOfNoiseOnDTI.pdf:andersonMRM01TheoreticalAnalysisOfTheEffectsOfNoiseOnDTI.pdf:PDF},
269 :     owner = {gk},
270 :     timestamp = {2007.07.31}
271 :     }
272 :    
273 :     @ARTICLE{GLK:Arsigny2006,
274 :     author = {Vincent Arsigny and Pierre Fillard and Xavier Pennec and Nicholas
275 :     Ayache},
276 :     title = {Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite
277 :     Matrices},
278 :     journal = {SIAM Journal on Matrix Analysis and Applications},
279 :     year = {2006},
280 :     volume = {29},
281 :     pages = {328--347},
282 :     note = {In press.},
283 :     comment = {ftp://ftp-sop.inria.fr/epidaure/Publications/Arsigny/arsigny_siam_tensors.pdf},
284 :     file = {arsignySIAM06GeometricMeansInANovelVectorSpaceStructureOnSymmetricPositiveDefiniteMatrices.pdf:arsignySIAM06GeometricMeansInANovelVectorSpaceStructureOnSymmetricPositiveDefiniteMatrices.pdf:PDF},
285 :     keywords = {DT-{MRI}, Tensors, Riemannian geometry, Lie groups, interpolation,
286 :     Log-Euclidean metrics },
287 :     owner = {gk},
288 :     timestamp = {2007.07.30}
289 :     }
290 :    
291 :     @ARTICLE{GLK:arsignyMRM06,
292 :     author = {Vincent Arsigny and Pierre Fillard and Xavier Pennec and Nicholas
293 :     Ayache},
294 :     title = {{L}og-{E}uclidean Metrics for Fast and Simple Calculus on Diffusion
295 :     Tensors},
296 :     journal = MRM,
297 :     year = {2006},
298 :     volume = {56},
299 :     pages = {411--421},
300 :     number = {2},
301 :     month = {August},
302 :     file = {arsignyMRM06LogEuclideanMetricsForFastAndSimpleCalculusOnDiffusionTensors.pdf:arsignyMRM06LogEuclideanMetricsForFastAndSimpleCalculusOnDiffusionTensors.pdf:PDF},
303 :     owner = {gk},
304 :     review = {DT as covariance
305 :    
306 :    
307 :     swelling
308 :    
309 :    
310 :     proud to point out that tensors are vectors},
311 :     timestamp = {2007.07.16}
312 :     }
313 :    
314 :     @INPROCEEDINGS{GLK:Aylward1996,
315 :     author = {Stephen Aylward and Elizabeth Bullitt and Stephen Pizer and David
316 :     Eberly},
317 :     title = {Intensity Ridge and Widths for Tubular Object Segmentation and Description},
318 :     booktitle = {Proc. Workshop on Mathematical Methods in Biomedical Image Analysis
319 :     (MMBIA)},
320 :     year = {1996},
321 :     pages = {131--138},
322 :     comment = {for raster scan of same document, without font glitches, see aylward96IntensityRidgeAndWidthsForTubularObjectSegmentationAndDescription.pdf},
323 :     doi = {10.1109/MMBIA.1996.534065},
324 :     file = {aylward96IntensityRidgeAndWidthsForTubularObjectSegmentationAndDescription2.pdf:aylward96IntensityRidgeAndWidthsForTubularObjectSegmentationAndDescription2.pdf:PDF},
325 :     owner = {gk},
326 :     review = {Seems to say that they go in two steps- first finding cores at a fixed
327 :     scale, and then traversing scales (at detected location) to get the
328 :     right scale},
329 :     timestamp = {2008.03.22}
330 :     }
331 :    
332 :     @ARTICLE{GLK:Aylward2002,
333 :     author = {Stephen R. Aylward and Elizabeth Bullitt},
334 :     title = {Initialization, Noise, Singularities, and Scale in Height Ridge Traversal
335 :     for Tubular Object Centerline Extraction},
336 :     journal = TMI,
337 :     year = {2002},
338 :     volume = {21},
339 :     pages = {61-75},
340 :     number = {2},
341 :     month = {Feb},
342 :     doi = {10.1109/42.993126},
343 :     file = {aylwardTMI02InitializationNoiseSingularitiesAndScaleInHeightRidgeTraversalForTubularObjectCenterlineExtraction.pdf:aylwardTMI02InitializationNoiseSingularitiesAndScaleInHeightRidgeTraversalForTubularObjectCenterlineExtraction.pdf:PDF},
344 :     keywords = {ridges, scale-space},
345 :     owner = {gk},
346 :     timestamp = {2008.04.05}
347 :     }
348 :    
349 :     @ARTICLE{GLK:Bahn1999,
350 :     author = {Mark M. Bahn},
351 :     title = {A Linear Relationship Exists among Brain Diffusion Eigenvalues Measured
352 :     by Diffusion Tensor Magnetic Resonance Imaging},
353 :     journal = JMR,
354 :     year = {1999},
355 :     volume = {137},
356 :     pages = {33--38},
357 :     file = {bahnJMR99ALinearRelationshipExistsAmongBrainDiffusionEigenvaluesMeasuredByDTMRI.pdf:bahnJMR99ALinearRelationshipExistsAmongBrainDiffusionEigenvaluesMeasuredByDTMRI.pdf:PDF},
358 :     owner = {gk},
359 :     timestamp = {2007.07.11}
360 :     }
361 :    
362 :     @ARTICLE{GLK:Bahn1999a,
363 :     author = {Mark M. Bahn},
364 :     title = {Invariant and Orthonormal Scalar Measures Derived from Magnetic Resonance
365 :     Diffusion Tensor Imaging},
366 :     journal = JMR,
367 :     year = {1999},
368 :     volume = {141},
369 :     pages = {68--77},
370 :     comment = {RHS of Eq [A5] is missing factor sqrt(3/2). Eq [C7] is statement of
371 :     how eigenvalues can be sorted "without the use of logical operations
372 :     or the need to order the eigenvalues"},
373 :     file = {bahnJMR99InvariantAndOrthogonalScalarMeasuresDerivedFromMRDTI.pdf:bahnJMR99InvariantAndOrthogonalScalarMeasuresDerivedFromMRDTI.pdf:PDF},
374 :     owner = {gk},
375 :     timestamp = {2007.07.11}
376 :     }
377 :    
378 :     @ARTICLE{GLK:Bahn1999b,
379 :     author = {Mark M. Bahn},
380 :     title = {Comparison of Scalar Measures Used in Magnetic Resonance Diffusion
381 :     Tensor Imaging},
382 :     journal = JMR,
383 :     year = {1999},
384 :     volume = {139},
385 :     pages = {1--7},
386 :     number = {1},
387 :     file = {bahnJMR99ComparisonOfScalarMeasuresUsedInMagneticResonanceDiffusionTensorImaging.pdf:bahnJMR99ComparisonOfScalarMeasuresUsedInMagneticResonanceDiffusionTensorImaging.pdf:PDF},
388 :     owner = {gk},
389 :     timestamp = {2007.08.02}
390 :     }
391 :    
392 :     @INPROCEEDINGS{GLK:Bajcsy1987,
393 :     author = {R Bajcsy and F Solina},
394 :     title = {Three dimensional object representation revisited},
395 :     booktitle = {Proc. 1st Intl. Conference on Computer Vision},
396 :     year = {1987},
397 :     pages = {231--240},
398 :     address = {London, England},
399 :     publisher = {IEEE},
400 :     owner = {gk},
401 :     timestamp = {2007.07.11}
402 :     }
403 :    
404 :     @INPROCEEDINGS{GLK:Banks1994,
405 :     author = {David C. Banks},
406 :     title = {Illumination in Diverse Codimensions},
407 :     booktitle = SIGGRAPH # { 1994},
408 :     year = {1994},
409 :     volume = {28},
410 :     pages = {327-334},
411 :     publisher = {Addison Wesley},
412 :     file = {banksSIGGRAPH94IlluminationInDiverseCodimensions.pdf:banksSIGGRAPH94IlluminationInDiverseCodimensions.pdf:PDF},
413 :     owner = {gk},
414 :     timestamp = {2007.07.11}
415 :     }
416 :    
417 :     @ARTICLE{GLK:Bard1974,
418 :     author = {J Bard and I Lauder},
419 :     title = {How well does {T}uring's Theory of Morphogenesis work?},
420 :     journal = {Journal of Theoretical Biology},
421 :     year = {1974},
422 :     volume = {45},
423 :     pages = {501--531},
424 :     number = {2},
425 :     month = {June},
426 :     owner = {gk},
427 :     timestamp = {2007.07.11}
428 :     }
429 :    
430 :     @ARTICLE{GLK:Barmpoutis2007,
431 :     author = {Angelos Barmpoutis and Baba C. Vemuri and Timothy M. Shepherd and
432 :     John R. Forder},
433 :     title = {Tensor Splines for Interpolation and Approximation of {DT-MRI} With
434 :     Applications to Segmentation of Isolated Rat Hippocampi},
435 :     journal = TMI,
436 :     year = {2007},
437 :     volume = {26},
438 :     pages = {1537--1546},
439 :     number = {11},
440 :     month = {Nov},
441 :     doi = {10.1109/TMI.2007.903195},
442 :     file = {barmpoutisTMI07TensorSplinesForInterpolationAndApproximationOfDTMRIWithApplicationsToSegmentationOfIsolatedRatHippocampi.pdf:barmpoutisTMI07TensorSplinesForInterpolationAndApproximationOfDTMRIWithApplicationsToSegmentationOfIsolatedRatHippocampi.pdf:PDF},
443 :     owner = {gk},
444 :     timestamp = {2008.07.02}
445 :     }
446 :    
447 :     @ARTICLE{GLK:Barr1981,
448 :     author = {A Barr},
449 :     title = {Superquadrics and angle-preserving transformations},
450 :     journal = CGnA,
451 :     year = {1981},
452 :     volume = {18},
453 :     pages = {11--23},
454 :     number = {1},
455 :     owner = {gk},
456 :     timestamp = {2007.07.11}
457 :     }
458 :    
459 :     @INPROCEEDINGS{GLK:Barr1989,
460 :     author = {A H Barr},
461 :     title = {The {E}instein Summation Notation: {I}ntroduction and Extensions},
462 :     booktitle = {ACM SIGGRAPH 1989 Course Notes \#30: {T}opics in Physically Based
463 :     Modeling},
464 :     year = {1989},
465 :     pages = {J1--J12},
466 :     file = {barrXXEinsteinSummationNotation.pdf:barrXXEinsteinSummationNotation.pdf:PDF},
467 :     owner = {gk},
468 :     timestamp = {2007.07.11}
469 :     }
470 :    
471 :     @ARTICLE{GLK:Basser1994,
472 :     author = {PJ Basser and J Mattiello and D LeBihan},
473 :     title = {{MR} Diffusion Tensor Spectroscopy and Imaging},
474 :     journal = {Biophysics Journal},
475 :     year = {1994},
476 :     volume = {66},
477 :     pages = {259--267},
478 :     number = {1},
479 :     file = {basser94MRDiffusionTensorSpectroscopyAndImaging.pdf:basser94MRDiffusionTensorSpectroscopyAndImaging.pdf:PDF},
480 :     owner = {gk},
481 :     timestamp = {2007.07.11}
482 :     }
483 :    
484 :     @INPROCEEDINGS{GLK:Basser1998,
485 :     author = {P J Basser},
486 :     title = {Fiber-tractography via Diffusion Tensor {MRI} ({DT-MRI})},
487 :     booktitle = ISMRM # { 1998},
488 :     year = {1998},
489 :     pages = {1226},
490 :     owner = {gk},
491 :     timestamp = {2007.07.11}
492 :     }
493 :    
494 :     @ARTICLE{GLK:Basser1997,
495 :     author = {P J Basser},
496 :     title = {New Histological and Physiological Stains Derived from Diffusion-Tensor
497 :     {MR} Images},
498 :     journal = ANYAS,
499 :     year = {1997},
500 :     volume = {820},
501 :     pages = {123--138},
502 :     file = {basser97NewHistologicalAndPhysiologicalStainsFromDTMRI.pdf:basser97NewHistologicalAndPhysiologicalStainsFromDTMRI.pdf:PDF},
503 :     owner = {gk},
504 :     timestamp = {2007.07.11}
505 :     }
506 :    
507 :     @ARTICLE{GLK:Basser1995,
508 :     author = {Peter J. Basser},
509 :     title = {Inferring Microstructural Features and the Physiological State of
510 :     Tissues from Diffusion-Weighted Images},
511 :     journal = NMRB,
512 :     year = {1995},
513 :     volume = {8},
514 :     pages = {333--344},
515 :     file = {basserNMRB95InferringMicrostructuralFeaturesAndThePhysiologicalStateOfTissuesFromDWI.pdf:basserNMRB95InferringMicrostructuralFeaturesAndThePhysiologicalStateOfTissuesFromDWI.pdf:PDF},
516 :     keywords = {tensor},
517 :     owner = {gk},
518 :     review = {definition of FA in eq (30) is too big by a factor of sqrt(3/2)},
519 :     timestamp = {2007.07.06}
520 :     }
521 :    
522 :     @ARTICLE{GLK:Basser2002,
523 :     author = {Peter J. Basser and Derek K. Jones},
524 :     title = {Diffusion-tensor {MRI}: theory, experimental design and data analysis
525 :     - a technical review},
526 :     journal = NMRB,
527 :     year = {2002},
528 :     volume = {15},
529 :     pages = {456--467},
530 :     doi = {10.1002/nbm.783},
531 :     file = {basserNMRB02DTMRITheoryExperimentalDesignAndDataAnalysis-review.pdf:basserNMRB02DTMRITheoryExperimentalDesignAndDataAnalysis-review.pdf:PDF},
532 :     keywords = {tensor},
533 :     owner = {gk},
534 :     timestamp = {2007.07.06}
535 :     }
536 :    
537 :     @ARTICLE{GLK:Basser1994a,
538 :     author = {P J Basser and J Mattiello and D LeBihan},
539 :     title = {Estimation of the Effective Self-diffusion Tensor from the {NMR}
540 :     Spin-echo},
541 :     journal = JMR-B,
542 :     year = {1994},
543 :     volume = {103},
544 :     pages = {247--254},
545 :     number = {3},
546 :     file = {basserJMR94EstimationOfTheEffectiveSelf-DiffusionTensorFromTheNMRSpinEcho.pdf:basserJMR94EstimationOfTheEffectiveSelf-DiffusionTensorFromTheNMRSpinEcho.pdf:PDF},
547 :     keywords = {tensor},
548 :     owner = {gk},
549 :     timestamp = {2007.07.06}
550 :     }
551 :    
552 :     @ARTICLE{GLK:BasserSP07,
553 :     author = {Peter J. Basser and Sinisa Pajevic},
554 :     title = {Spectral Decomposition of a 4th-order Covariance Tensor: {A}pplications
555 :     to Diffusion Tensor {MRI}},
556 :     journal = {Signal Processing},
557 :     year = {2007},
558 :     volume = {87},
559 :     pages = {220--236},
560 :     file = {basserSP07SpectralDecompositionOfA4thOrderCovarianceTensorApplicationsToDiffusionTensorMRI.pdf:basserSP07SpectralDecompositionOfA4thOrderCovarianceTensorApplicationsToDiffusionTensorMRI.pdf:PDF},
561 :     owner = {gk},
562 :     timestamp = {2007.07.16}
563 :     }
564 :    
565 :     @ARTICLE{GLK:BasserTMI03,
566 :     author = {P J Basser and S Pajevic},
567 :     title = {A Normal Distribution for Tensor-Valued Random Variables: {A}pplications
568 :     to Diffusion Tensor {MRI}},
569 :     journal = TMI,
570 :     year = {2003},
571 :     volume = {22},
572 :     pages = {785--794},
573 :     number = {7},
574 :     month = {July},
575 :     file = {basserTMI03ANormalDistributionForTensorValuedRandomVariables.pdf:basserTMI03ANormalDistributionForTensorValuedRandomVariables.pdf:PDF},
576 :     owner = {gk},
577 :     timestamp = {2007.07.16}
578 :     }
579 :    
580 :     @ARTICLE{GLK:BasserMRM00,
581 :     author = {Peter J. Basser and Sinisa Pajevic and Carlo Pierpaoli and Jeffrey
582 :     Duda and Akram Aldroubi},
583 :     title = {In Vivo Fiber Tractograpy Using {DT-MRI} Data},
584 :     journal = MRM,
585 :     year = {2000},
586 :     volume = {44},
587 :     pages = {625--632},
588 :     file = {basserMRM00InVivoFiberTractographyUsingDTMRIdata.pdf:basserMRM00InVivoFiberTractographyUsingDTMRIdata.pdf:PDF},
589 :     keywords = {tensor},
590 :     owner = {gk},
591 :     timestamp = {2007.07.06}
592 :     }
593 :    
594 :     @ARTICLE{GLK:Basser1996,
595 :     author = {P J Basser and C Pierpaoli},
596 :     title = {Microstructural and Physiological Features of Tissues Elucidated
597 :     by Quantitative-Diffusion-Tensor {MRI}},
598 :     journal = JMR-B,
599 :     year = {1996},
600 :     volume = {111},
601 :     pages = {209--219},
602 :     file = {basserJMR96MicrostructuralAndPhysiologicalFeaturesOfTissuesElucidatedByQuantitativeDTMRI.pdf:basserJMR96MicrostructuralAndPhysiologicalFeaturesOfTissuesElucidatedByQuantitativeDTMRI.pdf:PDF},
603 :     owner = {gk},
604 :     timestamp = {2007.07.07}
605 :     }
606 :    
607 :     @ARTICLE{GLK:Batchelor2006,
608 :     author = {P. G. Batchelor and F Calamante and J.-D. Tournier and D. Atkinson
609 :     and D. L. G. Hill and A. Connelly},
610 :     title = {Quantification of the shape of fiber tracts},
611 :     journal = MRM,
612 :     year = {2006},
613 :     volume = {55},
614 :     pages = {894--903},
615 :     number = {4},
616 :     file = {batchelorMRM06QuantificationOfTheShapeOfFiberTracts.pdf:batchelorMRM06QuantificationOfTheShapeOfFiberTracts.pdf:PDF},
617 :     owner = {gk},
618 :     timestamp = {2007.08.02}
619 :     }
620 :    
621 :     @ARTICLE{GLK:batchelorMRM05,
622 :     author = {P. G. Batchelor and M. Moakher and D. Atkinson and F. Calamante and
623 :     A. Connelly},
624 :     title = {A Rigorous Framework for Diffusion Tensor Calculus},
625 :     journal = MRM,
626 :     year = {2005},
627 :     volume = {53},
628 :     pages = {221--225},
629 :     number = {1},
630 :     month = {January},
631 :     file = {batchelorMRM05ARigorousFrameworkForDiffusionTensorCalculus.pdf:batchelorMRM05ARigorousFrameworkForDiffusionTensorCalculus.pdf:PDF},
632 :     owner = {gk},
633 :     timestamp = {2007.07.16}
634 :     }
635 :    
636 :     @INPROCEEDINGS{GLK:Bauer2002,
637 :     author = {Dirk Bauer and Ronald Peikert},
638 :     title = {Vortex Tracking in Scale-Space},
639 :     booktitle = {Proc. IEEE TVCG/EG Symposium on Visualization},
640 :     year = {2002},
641 :     pages = {140--147},
642 :     file = {bauerVISSYM02VortexTrackingInScaleSpace.pdf:bauerVISSYM02VortexTrackingInScaleSpace.pdf:PDF},
643 :     keywords = {scale-space},
644 :     owner = {gk},
645 :     review = {references as example of previous work on scale-space in vector vis:
646 :    
647 :     U. Diewald, T. Preusser and M. Rumpf. Anisotropic Diffusion in Vector
648 :     Field Visualization on Euclidean Domains and Surfaces. In IEEE Transactions
649 :     on Visualization and Computer Graphics, pp. 139-149, Apr.- Jun. 2000.
650 :    
651 :    
652 :    
653 :     talks about scale-space axioms, and apparently some proof from Florack
654 :     [3], but doesn't mention
655 :    
656 :    
657 :     concerned about linear features extracted via parallel vector operator
658 :    
659 :    
660 :     given the use of unstructured grids, uses heat diffusion simulation
661 :     to get at larger scales
662 :    
663 :    
664 :     honestly didn't see the content on tracking features in scale space-
665 :     it seemed to be more: look at what features remain after we blur
666 :     the crap out of the data},
667 :     timestamp = {2008.03.23}
668 :     }
669 :    
670 :     @ARTICLE{GLK:Beaulieu2002,
671 :     author = {C Beaulieu},
672 :     title = {The basis of anisotropic water diffusion in the nervous system -
673 :     {A} technical review},
674 :     journal = NMRB,
675 :     year = {2002},
676 :     volume = {15},
677 :     pages = {435--455},
678 :     file = {beaulieuNMRB02TheBasisOfAnisotropicWaterDiffusionInTheNervousSystem.pdf:beaulieuNMRB02TheBasisOfAnisotropicWaterDiffusionInTheNervousSystem.pdf:PDF},
679 :     keywords = {biology, diffusion},
680 :     owner = {gk},
681 :     timestamp = {2007.07.06}
682 :     }
683 :    
684 :     @ARTICLE{GLK:Behrens2007,
685 :     author = {T. E. J. Behrens and H. Johansen Berg and S. Jbabdi and M. F. S.
686 :     Rushworth and M. W. Woolricha},
687 :     title = {Probabilistic diffusion tractography with multiple fibre orientations:
688 :     {W}hat can we gain?},
689 :     journal = NI,
690 :     year = {2007},
691 :     volume = {34},
692 :     pages = {144--155},
693 :     number = {1},
694 :     month = {January},
695 :     doi = {10.1016/j.neuroimage.2006.09.018},
696 :     file = {behrensNeuroImage07ProbabilisticDiffusionTractographyWithMultipleFiberOrientationsWhatCanWeGain.pdf:behrensNeuroImage07ProbabilisticDiffusionTractographyWithMultipleFiberOrientationsWhatCanWeGain.pdf:PDF},
697 :     keywords = {qazi},
698 :     owner = {gk},
699 :     timestamp = {2007.09.19}
700 :     }
701 :    
702 :     @ARTICLE{GLK:Bello2008,
703 :     author = {Lorenzo Bello and Anna Gambini and Antonella Castellano and Giorgio
704 :     Carrabba and Francesco Acerbi and Enrica Fava and Carlo Giussani
705 :     and Marcello Cadioli and Valeria Blasi and Alessandra Casarotti and
706 :     Costanza Papagno and Arun K. Gupta and Sergio Gaini and Giuseppe
707 :     Scotti and Andrea Falini},
708 :     title = {Motor and language {DTI} Fiber Tracking combined with intraoperative
709 :     subcortical mapping for surgical removal of gliomas},
710 :     journal = NI,
711 :     year = {2008},
712 :     volume = {39},
713 :     pages = {369--382},
714 :     number = {1},
715 :     month = {Jan.},
716 :     file = {belloNI08MotorAndLanguageDTIFiberTrackingCombinedWithIntraoperativeSubcorticalMappingForSurgicalRemovalOfGliomas.pdf:belloNI08MotorAndLanguageDTIFiberTrackingCombinedWithIntraoperativeSubcorticalMappingForSurgicalRemovalOfGliomas.pdf:PDF},
717 :     keywords = {neurosurgery tumor},
718 :     owner = {gk},
719 :     timestamp = {2008.05.03}
720 :     }
721 :    
722 :     @ARTICLE{GLK:Benedetti2007,
723 :     author = {Beatrice Benedetti and Marco Rovaris and Elda Judica and Giovanni
724 :     Donadoni and Gianfranco Ciboddo and Massimo Filippi},
725 :     title = {Assessing {"}occult{"} cervical cord damage in patients with neuropsychiatric
726 :     systemic lupus erythematosus using diffusion tensor {MRI}},
727 :     journal = {Journal of Neurology, Neurosurgery and Psychiatry},
728 :     year = {2007},
729 :     volume = {78},
730 :     pages = {893--895},
731 :     doi = {10.1136/jnnp.2006.110262},
732 :     file = {benedettiJNNP07AssessingOccultCervicalCordDamageInPatientsWithNeuropsychiatricSystemicLupusErythematosusUsingDiffusionTensorMRI.pdf:benedettiJNNP07AssessingOccultCervicalCordDamageInPatientsWithNeuropsychiatricSystemicLupusErythematosusUsingDiffusionTensorMRI.pdf:PDF},
733 :     keywords = {vaina},
734 :     owner = {gk},
735 :     timestamp = {2007.09.10}
736 :     }
737 :    
738 :     @INPROCEEDINGS{GLK:Bergmann2006,
739 :     author = {{\O}rjan Bergmann and Gordon Kindlmann and Arvid Lundervold and Carl-Fredrik
740 :     Westin},
741 :     title = {Diffusion k-tensor estimation from {Q}-ball imaging using discretized
742 :     principal axes},
743 :     booktitle = MICCAI # { 2006},
744 :     year = {2006},
745 :     series = {Lecture Notes in Computer Science 4191},
746 :     pages = {268--275},
747 :     address = {Copenhagen, Denmark},
748 :     month = {October},
749 :     file = {bergmannMICCAI06.pdf:bergmannMICCAI06.pdf:PDF},
750 :     owner = {gk},
751 :     timestamp = {2008.01.07}
752 :     }
753 :    
754 :     @INPROCEEDINGS{GLK:Bergmann2007,
755 :     author = {{\O}rjan Bergmann and Gordon Kindlmann and Sharon Peled and Carl-Fredrik
756 :     Westin},
757 :     title = {Two-Tensor Fiber Tractography},
758 :     booktitle = {Proc. IEEE Intl. Symposium on Biomedical Imaging (ISBI)},
759 :     year = {2007},
760 :     pages = {796--799},
761 :     file = {bergmannISBI07.pdf:bergmannISBI07.pdf:PDF},
762 :     owner = {gk},
763 :     timestamp = {2007.12.23}
764 :     }
765 :    
766 :     @ARTICLE{GLK:Beyer2007,
767 :     author = {Johanna Beyer and Markus Hadwiger and Stefan Wolfsberger and Katja
768 :     B{\"u}hler},
769 :     title = {High-Quality Multimodal Volume Rendering for Preoperative Planning
770 :     of Neurosurgical Interventions},
771 :     journal = TVCG,
772 :     year = {2007},
773 :     volume = {13},
774 :     pages = {1696--1703},
775 :     number = {6},
776 :     file = {beyerVIS07HighQualityMultimodalVolumeRenderingForPreoperativePlanningOfNeurosurgicalInterventions.pdf:beyerVIS07HighQualityMultimodalVolumeRenderingForPreoperativePlanningOfNeurosurgicalInterventions.pdf:PDF},
777 :     owner = {gk},
778 :     timestamp = {2008.01.21}
779 :     }
780 :    
781 :     @INPROCEEDINGS{GLK:bigun87,
782 :     author = {J. Big{\"u}n and G. H. Granlund},
783 :     title = {Optimal Orientation Detection of Linear Symmetry},
784 :     booktitle = {Proc. IEEE 1st Intl. Conference on Computer Vision},
785 :     year = {1987},
786 :     pages = {433-438},
787 :     address = {London, Great Britain},
788 :     month = {June},
789 :     owner = {gk},
790 :     timestamp = {2007.07.30}
791 :     }
792 :    
793 :     @INPROCEEDINGS{GLK:Blaas2007,
794 :     author = {Jorik Blaas and Charl P. Botha and Charles Majoie and Aart Nederveen
795 :     and Frans M. Vos and Frits H. Post},
796 :     title = {Interactive Visualization of Fused {fMRI} and {DTI} for Planning
797 :     Brain Tumor Resections},
798 :     booktitle = {Proc. SPIE Medical Imaging 2007},
799 :     year = {2007},
800 :     editor = {Kevin R. Cleary and Michael I. Miga},
801 :     volume = {6509},
802 :     file = {blaas07InteractiveVisualizationOfFusedFMRIandDTIforPlanningBrainTumorResections.pdf:blaas07InteractiveVisualizationOfFusedFMRIandDTIforPlanningBrainTumorResections.pdf:PDF},
803 :     keywords = {neurosurgery},
804 :     owner = {gk},
805 :     timestamp = {2008.05.02}
806 :     }
807 :    
808 :     @INPROCEEDINGS{GLK:Blaas2005,
809 :     author = {Jorik Blaas and Charl P. Botha and Bart Peters and Frans M. Vos and
810 :     Frits H. Post},
811 :     title = {Fast and Reproducible Fiber Bundle Selection in {DTI} Visualization},
812 :     booktitle = VIS,
813 :     year = {2005},
814 :     pages = {59--64},
815 :     doi = {10.1109/VISUAL.2005.1532778},
816 :     file = {blaasVIS05FastAndReproducibleFiberBundleSelectionInDTIVisualization.pdf:blaasVIS05FastAndReproducibleFiberBundleSelectionInDTIVisualization.pdf:PDF},
817 :     owner = {gk},
818 :     timestamp = {2008.01.21}
819 :     }
820 :    
821 :     @INPROCEEDINGS{GLK:Blaas2007a,
822 :     author = {Jorik Blaas and Charl P. Botha and Frits H. Post},
823 :     title = {Interactive visualization of multi-field medical data using linked
824 :     physical and feature-space views},
825 :     booktitle = {Proc. Eurographics/IEEE VGTC Symp. on Visualization},
826 :     year = {2007},
827 :     editor = {Ken Museth and Anders Ynnerman and Torsten M\"{o}ller},
828 :     pages = {123--130},
829 :     file = {blaas07InteractiveVisualizationOfMultiFieldMedicalDataUsingLinkedPhysicalAndFeatureSpaceViews.pdf:blaas07InteractiveVisualizationOfMultiFieldMedicalDataUsingLinkedPhysicalAndFeatureSpaceViews.pdf:PDF},
830 :     owner = {gk},
831 :     timestamp = {2008.05.02}
832 :     }
833 :    
834 :     @ARTICLE{GLK:Bogdanova2007,
835 :     author = {Iva Bogdanova and Xavier Bresson and Jean-Philippe Thiran and Pierre
836 :     Vandergheynst},
837 :     title = {Scale Space Analysis and Active Contours for Omnidirectional Images},
838 :     journal = TIP,
839 :     year = {2007},
840 :     volume = {16},
841 :     pages = {1888--1901},
842 :     number = {7},
843 :     month = {July},
844 :     doi = {10.1109/TIP.2007.899008},
845 :     file = {bogdanovaTIP07ScaleSpaceAnalysisAndActiveContoursForOmnidirectionalImages.pdf:bogdanovaTIP07ScaleSpaceAnalysisAndActiveContoursForOmnidirectionalImages.pdf:PDF},
846 :     keywords = {contours, scale-space},
847 :     owner = {gk},
848 :     timestamp = {2008.03.22}
849 :     }
850 :    
851 :     @TECHREPORT{GLK:Bossen1996a,
852 :     author = {Frank Bossen},
853 :     title = {Anisotropic Mesh Generation with Particles},
854 :     institution = {School of Computer Science, Carnegie Mellon University},
855 :     year = {1996},
856 :     number = {CMU-CS-96-13},
857 :     month = {May},
858 :     file = {bossenMS96AnisotropicMeshGenerationWithParticles.pdf:bossenMS96AnisotropicMeshGenerationWithParticles.pdf:PDF},
859 :     keywords = {particles},
860 :     owner = {gk},
861 :     timestamp = {2008.03.21}
862 :     }
863 :    
864 :     @INPROCEEDINGS{GLK:Bossen1996,
865 :     author = {Frank J Bossen and Paul S Heckbert},
866 :     title = {A Pliant Method for Anisotropic Mesh Generation},
867 :     booktitle = {Proc. 5th Intl. Meshing Roundtable},
868 :     year = {1996},
869 :     pages = {63--74},
870 :     file = {bossen96APliantMethodForAnisotropicMeshGeneration.pdf:bossen96APliantMethodForAnisotropicMeshGeneration.pdf:PDF},
871 :     keywords = {particles},
872 :     owner = {gk},
873 :     timestamp = {2008.03.21}
874 :     }
875 :    
876 :     @INPROCEEDINGS{GLK:Botha2008,
877 :     author = {C. P. Botha and F. H. Post},
878 :     title = {Hybrid scheduling in the {DeVIDE} dataflow visualisation environment},
879 :     booktitle = {Proc. of Simulation and Visualization},
880 :     year = {2008},
881 :     editor = {H. Hauser and S. Strassburger and H. Theisel},
882 :     pages = {309--322},
883 :     publisher = {SCS Publishing House Erlangen},
884 :     file = {botha2008HybridSchedulingInTheDeVIDEDataflowVisualizationEnvironment.pdf:botha2008HybridSchedulingInTheDeVIDEDataflowVisualizationEnvironment.pdf:PDF},
885 :     owner = {gk},
886 :     timestamp = {2008.07.03}
887 :     }
888 :    
889 :     @ARTICLE{GLK:Bouix2007,
890 :     author = {Sylvain Bouix and Marcos Martin-Fernandez and Lida Ungar and Motoaki
891 :     Nakamura and Min-Seong Koo and Robert W. McCarley and Martha E. Shenton},
892 :     title = {On evaluating brain tissue classifiers without a ground truth},
893 :     journal = NI,
894 :     year = {2007},
895 :     volume = {36},
896 :     pages = {1207--1224},
897 :     number = {4},
898 :     owner = {gk},
899 :     timestamp = {2008.05.03}
900 :     }
901 :    
902 :     @BOOK{GLK:Bourne92,
903 :     title = {Vector Analysis and Cartesian Tensors},
904 :     publisher = {CRC Press},
905 :     year = {1992},
906 :     author = {D E Bourne and P C Kendall},
907 :     edition = {3rd},
908 :     owner = {gk},
909 :     timestamp = {2007.07.07}
910 :     }
911 :    
912 :     @ARTICLE{GLK:Bresson2006,
913 :     author = {Xavier Bresson and Pierre Vandergheynst and Jean-Philippe Thiran},
914 :     title = {Multiscale Active Contours},
915 :     journal = IJCV,
916 :     year = {2006},
917 :     volume = {70},
918 :     pages = {197--211},
919 :     number = {3},
920 :     doi = {10.1007/s11263-006-7462-3},
921 :     file = {bresson06MultiscaleActiveContours.pdf:bresson06MultiscaleActiveContours.pdf:PDF},
922 :     keywords = {contours},
923 :     owner = {gk},
924 :     timestamp = {2008.03.22}
925 :     }
926 :    
927 :     @INPROCEEDINGS{GLK:Broersen2005,
928 :     author = {Alexander Broersen and Robert van Liere},
929 :     title = {Transfer Functions for Imaging Spectroscopy Data using Principal
930 :     Component Analysis},
931 :     booktitle = {Proc. Eurographics/IEEE VGTC Symp. on Visualization},
932 :     year = {2005},
933 :     pages = {117--123},
934 :     file = {broersen05TransferFunctionsForImagingSpectroscopyDataUsingPCA.pdf:broersen05TransferFunctionsForImagingSpectroscopyDataUsingPCA.pdf:PDF},
935 :     owner = {gk},
936 :     timestamp = {2008.05.02}
937 :     }
938 :    
939 :     @INPROCEEDINGS{GLK:Broersen2005a,
940 :     author = {Alexander Broersen and Robert van Liere and Ron M.A. Heeren},
941 :     title = {Comparing three {PCA}-based methods for the 3D visualization of imaging
942 :     spectroscopy data},
943 :     booktitle = {Visualization, Imaging, and Image Processing (Proc. 5th IAESTED Intl.
944 :     Conf.)},
945 :     year = {2005},
946 :     editor = {J. J. Villanueva},
947 :     address = {Benidorm, Spain},
948 :     file = {broersen05ComparingThreePCABasedMethodsForThe3DVisualizationOfImagingSpectroscopyData.pdf:broersen05ComparingThreePCABasedMethodsForThe3DVisualizationOfImagingSpectroscopyData.pdf:PDF},
949 :     owner = {gk},
950 :     timestamp = {2008.05.03}
951 :     }
952 :    
953 :     @ARTICLE{GLK:Bruckner2006,
954 :     author = {Stefan Bruckner and S{\"o}ren Grimm and Armin Kanitsar and Eduard
955 :     Gr{\"o}ller},
956 :     title = {Illustrative Context-Preserving Exploration of Volume Data},
957 :     journal = TVCG,
958 :     year = {2006},
959 :     volume = {12},
960 :     pages = {1559--1569},
961 :     number = {6},
962 :     file = {brucknerTVCG06IllustrativeContextPreservingExplorationOfVolumeData.pdf:brucknerTVCG06IllustrativeContextPreservingExplorationOfVolumeData.pdf:PDF},
963 :     owner = {gk},
964 :     timestamp = {2008.01.21},
965 :     url = {http://www.cg.tuwien.ac.at/research/publications/2006/bruckner-2006-ICE/}
966 :     }
967 :    
968 :     @ARTICLE{GLK:Burgeth2007,
969 :     author = {S Burgeth and S Didas and L Florack and J Weickert},
970 :     title = {A generic approach to diffusion filtering of matrix-fields},
971 :     journal = {Computing},
972 :     year = {2007},
973 :     volume = {81},
974 :     pages = {179--197},
975 :     number = {2--3},
976 :     month = {Nov},
977 :     file = {:Users/gk/lit/pdf/burgeth07AGenericApproachToDiffusionFilteringOfMatrixFields.pdf:PDF},
978 :     owner = {gk},
979 :     timestamp = {2009.07.28}
980 :     }
981 :    
982 :     @ARTICLE{GLK:Busking2007,
983 :     author = {S Busking and A Vilanova Bartroli and J J van Wijk},
984 :     title = {Particle-based non-photorealistic volume visualization},
985 :     journal = {The Visual Computer},
986 :     year = {2007},
987 :     volume = {24},
988 :     pages = {335--346},
989 :     abstract = {Non-photorealistic techniques are usually applied to produce stylistic
990 :     renderings. In visualization, these techniques are often able to
991 :     simplify data, producing clearer images than traditional visualization
992 :     methods. We investigate the use of particle systems for visualizing
993 :     volume datasets using non-photorealistic techniques. In our VolumeFlies
994 :     framework, user-selectable rules affect particles to produce a variety
995 :     of illustrative styles in a unified way. The techniques presented
996 :     do not require the generation of explicit intermediary surfaces.},
997 :     owner = {gk},
998 :     timestamp = {2009.06.28}
999 :     }
1000 :    
1001 :     @MISC{GLK:Byers1998,
1002 :     author = {Nina Byers},
1003 :     title = {E. {N}oether's Discovery of the Deep Connection Between Symmetries
1004 :     and Conservation Laws},
1005 :     year = {1998},
1006 :     note = {\url{http://arxiv.org/abs/physics/9807044v2}},
1007 :     abstract = {Emmy Noether proved two deep theorems, and their converses, on the
1008 :     connection between symmetries and conservation laws. Because these
1009 :     theorems are not in the mainstream of her scholarly work, which was
1010 :     the development of modern abstract algebra, it is of some historical
1011 :     interest to examine how she came to make these discoveries. The present
1012 :     paper is an historical account of the circumstances in which she
1013 :     discovered and proved these theorems which physicists refer to collectively
1014 :     as Noether's Theorem. The work was done soon after Hilbert's discovery
1015 :     of the variational principle which gives the field equations of general
1016 :     relativity. The failure of local energy conservation in the general
1017 :     theory was a problem that concerned people at that time, among them
1018 :     David Hilbert, Felix Klein, and Albert Einstein. Noether's theorems
1019 :     solved this problem. With her characteristically deep insight and
1020 :     thorough analysis, in solving that problem she discovered very general
1021 :     theorems that have profoundly influenced modern physics.},
1022 :     file = {:Users/gk/lit/pdf/byers98NoethersDiscoveryOfTheDeepConnectionBetweenSymmetriesAndConservationLaws.pdf:PDF},
1023 :     owner = {gk},
1024 :     timestamp = {2009.06.27},
1025 :     url = {http://arxiv.org/abs/physics/9807044v2}
1026 :     }
1027 :    
1028 :     @ARTICLE{GLK:Caan2006,
1029 :     author = {M. W. A. Caan and K. A. Vermeer and L. J. van Vliet and C. B. L.
1030 :     M. Majoie and B. D. Peters G. J. den Heeten and F.M. Vos},
1031 :     title = {Shaving diffusion tensor images in discriminant analysis: {A} study
1032 :     into schizophrenia},
1033 :     journal = MedIA,
1034 :     year = {2006},
1035 :     volume = {10},
1036 :     pages = {841--849},
1037 :     file = {caanMedIA06ShavingDiffusionTensorImagesInDiscriminantAnalysisAStudyIntoSchizophrenia.pdf:caanMedIA06ShavingDiffusionTensorImagesInDiscriminantAnalysisAStudyIntoSchizophrenia.pdf:PDF},
1038 :     owner = {gk},
1039 :     timestamp = {2008.04.05}
1040 :     }
1041 :    
1042 :     @ARTICLE{GLK:Canny1986,
1043 :     author = {J. Canny},
1044 :     title = {A Computational Approach To Edge Detection},
1045 :     journal = PAMI,
1046 :     year = {1986},
1047 :     volume = {8},
1048 :     pages = {679--714},
1049 :     number = {6},
1050 :     month = {Nov},
1051 :     owner = {gk},
1052 :     timestamp = {2009.12.17}
1053 :     }
1054 :    
1055 :     @BOOK{GLK:docarmo92,
1056 :     title = {Riemannian Geometry},
1057 :     publisher = {Birkh{\"a}user},
1058 :     year = {1992},
1059 :     author = {Manfredo Perdigao do~Carmo},
1060 :     address = {Boston, Mass},
1061 :     owner = {gk},
1062 :     timestamp = {2007.07.30}
1063 :     }
1064 :    
1065 :     @ARTICLE{GLK:Caselles1997,
1066 :     author = {Vicent Caselles and Ron Kimmel and Guillermo Sapiro},
1067 :     title = {Geodesic Active Contours},
1068 :     journal = IJCV,
1069 :     year = {1997},
1070 :     volume = {22},
1071 :     pages = {61--79},
1072 :     number = {1},
1073 :     file = {caselles97GeodesicActiveContours.pdf:caselles97GeodesicActiveContours.pdf:PDF},
1074 :     keywords = {contours},
1075 :     owner = {gk},
1076 :     timestamp = {2008.03.25}
1077 :     }
1078 :    
1079 :     @ARTICLE{GLK:Casimir1945,
1080 :     author = {H B G Casimir},
1081 :     title = {On {O}nsager's Principle of Microscopic Reversibility},
1082 :     journal = {Reviews of Modern Physics},
1083 :     year = {1945},
1084 :     volume = {17},
1085 :     pages = {343--350},
1086 :     number = {2,3},
1087 :     month = {April--July},
1088 :     doi = {10.1103/RevModPhys.17.343},
1089 :     file = {casimir45OnOnsagersPrincipleOfMicroscopicReversibility.pdf:casimir45OnOnsagersPrincipleOfMicroscopicReversibility.pdf:PDF},
1090 :     keywords = {physics},
1091 :     owner = {gk},
1092 :     timestamp = {2008.04.05}
1093 :     }
1094 :    
1095 :     @INPROCEEDINGS{GLK:castano-moragaMICCAI04,
1096 :     author = {Carlos A. Casta{\~n}o-Moraga and Miguel A. Rodrigues-Florido and
1097 :     Luis Alvarez and Carl-Fredrik Westin and Juan Ruiz-Alzola},
1098 :     title = {Anisotropic Interpolation of {DT-MRI}},
1099 :     booktitle = MICCAI # { 2004},
1100 :     year = {2004},
1101 :     series = {Lecture Notes in Computer Science},
1102 :     address = {Rennes - Saint Malo, France},
1103 :     month = {September},
1104 :     file = {castano-moragaMICCAI04AnisotropicInterpolationOfDT-MRI.pdf:castano-moragaMICCAI04AnisotropicInterpolationOfDT-MRI.pdf:PDF},
1105 :     owner = {gk},
1106 :     timestamp = {2007.07.30}
1107 :     }
1108 :    
1109 :     @ARTICLE{GLK:Catani2002,
1110 :     author = {Marco Catani and Robert J. Howard and Sinisa Pajevic and Derek K.
1111 :     Jones},
1112 :     title = {Virtual in Vivo Interactive Dissection of White Matter Fasciculi
1113 :     in the Human Brain},
1114 :     journal = NI,
1115 :     year = {2002},
1116 :     volume = {17},
1117 :     pages = {77--94},
1118 :     number = {1},
1119 :     month = {September},
1120 :     doi = {10.1006/nimg.2002.1136},
1121 :     file = {cataniNI02VirtualInVivoInteractiveDissectionOfWhiteMatterFasciculiInTheHumanBrain.pdf:cataniNI02VirtualInVivoInteractiveDissectionOfWhiteMatterFasciculiInTheHumanBrain.pdf:PDF},
1122 :     owner = {gk},
1123 :     timestamp = {2008.01.21}
1124 :     }
1125 :    
1126 :     @ARTICLE{GLK:Catani2003,
1127 :     author = {Marco Catani and Derek K. Jones and Rosario Donato and Dominic H.
1128 :     ffytche},
1129 :     title = {Occipito-temporal connections in the human brain},
1130 :     journal = {Brain},
1131 :     year = {2003},
1132 :     volume = {126},
1133 :     pages = {2093--2107},
1134 :     number = {9},
1135 :     month = {September},
1136 :     doi = {10.1093/brain/awg203},
1137 :     file = {cataniBrain03OccipitoTemporalConnectionsInTheHumanBrain.pdf:cataniBrain03OccipitoTemporalConnectionsInTheHumanBrain.pdf:PDF},
1138 :     keywords = {vaina},
1139 :     owner = {gk},
1140 :     timestamp = {2007.09.18}
1141 :     }
1142 :    
1143 :     @INPROCEEDINGS{GLK:Cates2007,
1144 :     author = {J. Cates and P. T. Fletcher and M. Styner and M. Shenton and R. Whitaker},
1145 :     title = {Shape modeling and analysis with entropy-based particle systems},
1146 :     booktitle = {Proc. Information Processing in Medical Imaging (IPMI)},
1147 :     year = {2007},
1148 :     volume = {4584},
1149 :     series = {Lecture Notes in Computer Science},
1150 :     pages = {333},
1151 :     publisher = {Springer},
1152 :     owner = {gk},
1153 :     timestamp = {2009.12.16}
1154 :     }
1155 :    
1156 :     @INPROCEEDINGS{GLK:Cates2006,
1157 :     author = {Joshua Cates and Miriah Meyer and P Thomas Fletcher and Ross Whitaker},
1158 :     title = {Entropy-Based Particle Systems for Shape Correspondence},
1159 :     booktitle = {Proc. Workshop on Mathematical Foundations of Computational Anatomy
1160 :     (MICCAI)},
1161 :     year = {2006},
1162 :     pages = {90--99},
1163 :     file = {catesMICCAI06EntropyBasedParticleSystemsForShapeCorrespondence.pdf:catesMICCAI06EntropyBasedParticleSystemsForShapeCorrespondence.pdf:PDF},
1164 :     keywords = {particles},
1165 :     owner = {gk},
1166 :     timestamp = {2008.03.21}
1167 :     }
1168 :    
1169 :     @ARTICLE{GLK:chang07,
1170 :     author = {Lin-Ching Chang and Cheng Guan Koay and Carlo Pierpaoli and Peter
1171 :     J. Basser},
1172 :     title = {Variance of Estimated {DTI}-Derived Parameters via First-Order Perturbation
1173 :     Methods},
1174 :     journal = MRM,
1175 :     year = {2007},
1176 :     volume = {57},
1177 :     pages = {141--149},
1178 :     file = {changMRM07VarianceOfEstimatedDTIDerivedParametersViaFirstOrderPerturbationMethods.pdf:changMRM07VarianceOfEstimatedDTIDerivedParametersViaFirstOrderPerturbationMethods.pdf:PDF},
1179 :     owner = {gk},
1180 :     timestamp = {2007.07.31}
1181 :     }
1182 :    
1183 :     @ARTICLE{GLK:Chefd'hotel2004,
1184 :     author = {C Chefd'hotel and D Tschumperl\'{e} and R Deriche and O Faugeras},
1185 :     title = {Regularizing Flows for Constrained Matrix-Valued Images},
1186 :     journal = JMIV,
1187 :     year = {2004},
1188 :     volume = {20},
1189 :     pages = {147--162},
1190 :     number = {1--2},
1191 :     file = {chefdhotelJMIV04RegularizingFlowsForConstrainedMatrixValuedImages.pdf:chefdhotelJMIV04RegularizingFlowsForConstrainedMatrixValuedImages.pdf:PDF},
1192 :     owner = {gk},
1193 :     timestamp = {2008.03.26}
1194 :     }
1195 :    
1196 :     @INPROCEEDINGS{GLK:chef02,
1197 :     author = {C. Chefd'hotel and D. Tschumperl{\'e} and R. Deriche and O. Faugeras},
1198 :     title = {Constrained Flows of Matrix-Valued Functions: Application to Diffusion
1199 :     Tensor Regularization},
1200 :     booktitle = {Proceedings 7th European Conference on Computer Vision-Part I (ECCV
1201 :     '02)},
1202 :     year = {2002},
1203 :     pages = {251--265},
1204 :     address = {London, UK},
1205 :     publisher = {Springer-Verlag},
1206 :     file = {chefdhotel02ConstrainedFlowsOfMatrixValuedFunctionsApplicationToDiffusionTensorRegularization.pdf:chefdhotel02ConstrainedFlowsOfMatrixValuedFunctionsApplicationToDiffusionTensorRegularization.pdf:PDF},
1207 :     owner = {gk},
1208 :     timestamp = {2007.07.30}
1209 :     }
1210 :    
1211 :     @ARTICLE{GLK:Clark2003,
1212 :     author = {Chris A. Clark and Thomas R. Barrick and Mary M. Murphy and B. Anthony
1213 :     Bell},
1214 :     title = {White matter fiber tracking in patients with space-occupying lesions
1215 :     of the brain: a new technique for neurosurgical planning?},
1216 :     journal = NI,
1217 :     year = {2003},
1218 :     volume = {20},
1219 :     pages = {1601--1608},
1220 :     number = {3},
1221 :     month = {Nov},
1222 :     doi = {doi:10.1016/j.neuroimage.2003.07.022},
1223 :     file = {clarkNI03WhiteMatterFiberTrackingInPatientsWithSpaceOccupyingLesionsOfTheBrainANewTechniqueForNeurosurgicalPlanning.pdf:clarkNI03WhiteMatterFiberTrackingInPatientsWithSpaceOccupyingLesionsOfTheBrainANewTechniqueForNeurosurgicalPlanning.pdf:PDF},
1224 :     keywords = {tumor neurosurgery},
1225 :     owner = {gk},
1226 :     timestamp = {2008.11.12}
1227 :     }
1228 :    
1229 :     @ARTICLE{GLK:conturo99,
1230 :     author = {Thomas E. Conturo and Nicolas F. Lori and Thomas S. Cull and Erbil
1231 :     Akbudak and Abraham Z. Snyder and Joshua S. Shimony and Robert C.
1232 :     McKinstry and Harold Burton and Marcus E. Raichle},
1233 :     title = {Tracking neuronal fiber pathways in the living human brain},
1234 :     journal = PNAS,
1235 :     year = {1999},
1236 :     volume = {96},
1237 :     pages = {10422--10427},
1238 :     month = {August},
1239 :     file = {conturoPNAS99TrackingNeuronalFiberPathwaysInTheLivingHumanBrain.pdf:conturoPNAS99TrackingNeuronalFiberPathwaysInTheLivingHumanBrain.pdf:PDF},
1240 :     keywords = {tractography},
1241 :     owner = {gk},
1242 :     timestamp = {2007.07.30}
1243 :     }
1244 :    
1245 :     @ARTICLE{GLK:conturo96,
1246 :     author = {T E~Conturo and R C~McKinstry and E~Akbudak and B H~Robinson},
1247 :     title = {Encoding of Anisotropic Diffusion with Tetrahedral Gradients: {A}
1248 :     General Mathematical Diffusion Formalism and Experimental Results},
1249 :     journal = MRM,
1250 :     year = {1996},
1251 :     volume = {35},
1252 :     pages = {399--412},
1253 :     number = {3},
1254 :     owner = {gk},
1255 :     timestamp = {2007.07.30}
1256 :     }
1257 :    
1258 :     @INPROCEEDINGS{GLK:Cook2005,
1259 :     author = {P A Cook and H Zhang and B Avants and P Yushkevich and D C Alexander
1260 :     and J C Gee and O Ciccarelli and A J Thompson},
1261 :     title = {An Automated Approach to Connectivity-based Partitioning of Brain
1262 :     Structures},
1263 :     booktitle = MICCAI # { 2005},
1264 :     year = {2005},
1265 :     volume = {8},
1266 :     series = {Lecture Notes in Computer Science},
1267 :     pages = {164--171},
1268 :     publisher = {Springer-Verlag},
1269 :     abstract = {We present an automated approach to the problem of connectivity-based
1270 :     partitioning of brain structures using diffusion imaging. White-matter
1271 :     fibres connect different areas of the brain, allowing them to interact
1272 :     with each other. Diffusion-tensor MRI measures the orientation of
1273 :     white-matter fibres in vivo, allowing us to perform connectivity-based
1274 :     partitioning non-invasively. Our new approach leverages atlas-based
1275 :     segmentation to automate anatomical labeling of the cortex. White-matter
1276 :     connectivities are inferred using a probabilistic tractography algorithm
1277 :     that models crossing pathways explicitly. The method is demonstrated
1278 :     with the partitioning of the corpus callosum of eight healthy sub
1279 :     jects.},
1280 :     file = {cookMiccai05AnAutomatedApproachToConnectivityBasedPartitioningOfBrainStructures.pdf:cookMiccai05AnAutomatedApproachToConnectivityBasedPartitioningOfBrainStructures.pdf:PDF},
1281 :     keywords = {diffusion, tractography, two-tensor},
1282 :     owner = {gk},
1283 :     timestamp = {2007.07.06}
1284 :     }
1285 :    
1286 :     @INPROCEEDINGS{GLK:Corouge2005,
1287 :     author = {I Corouge and P T Fletcher and S Joshi and J H Gilmore and G Gerig},
1288 :     title = {Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor
1289 :     {MRI} Analysis},
1290 :     booktitle = MICCAI # { 2005},
1291 :     year = {2005},
1292 :     pages = {131--139},
1293 :     file = {corougeMICCAI05FiberTractOrientedStatisticsForQuantitativeDiffusionTensorMRIAnalysis.pdf:corougeMICCAI05FiberTractOrientedStatisticsForQuantitativeDiffusionTensorMRIAnalysis.pdf:PDF},
1294 :     owner = {gk},
1295 :     timestamp = {2007.07.06}
1296 :     }
1297 :    
1298 :     @ARTICLE{GLK:Corouge2006,
1299 :     author = {I Corouge and P T Fletcher and S Joshi and S Gouttard and G Gerig},
1300 :     title = {Fiber tract-oriented statistics for quantitative diffusion tensor
1301 :     {MRI} Analysis},
1302 :     journal = MedIA,
1303 :     year = {2006},
1304 :     volume = {10},
1305 :     pages = {786--798},
1306 :     number = {5},
1307 :     file = {Corouge-DTI-Original-MedIA-2006.pdf:Corouge-DTI-Original-MedIA-2006.pdf:PDF},
1308 :     owner = {gk},
1309 :     timestamp = {2007.07.06}
1310 :     }
1311 :    
1312 :     @ARTICLE{GLK:Correa2006,
1313 :     author = {Carlos D. Correa and Deborah Silver and Min Chen},
1314 :     title = {Feature Aligned Volume Manipulation for Illustration and Visualization},
1315 :     journal = TVCG,
1316 :     year = {2006},
1317 :     volume = {12},
1318 :     pages = {1069--1076},
1319 :     number = {5},
1320 :     month = {September},
1321 :     doi = {10.1109/TVCG.2006.144},
1322 :     file = {correaTVCG06FeatureAlignedVolumeManipulationForIllustrationAndVisualization.pdf:correaTVCG06FeatureAlignedVolumeManipulationForIllustrationAndVisualization.pdf:PDF},
1323 :     owner = {gk},
1324 :     timestamp = {2008.01.21}
1325 :     }
1326 :    
1327 :     @BOOK{GLK:Crank,
1328 :     title = {The Mathematics of Diffusion},
1329 :     publisher = {Oxford University Press},
1330 :     year = {1975},
1331 :     author = {J Crank},
1332 :     address = {Oxford, England},
1333 :     owner = {gk},
1334 :     timestamp = {2007.07.30}
1335 :     }
1336 :    
1337 :     @ARTICLE{GLK:criscione00,
1338 :     author = {J C Criscione and J D Humphrey and A S Douglas and W C Hunter},
1339 :     title = {An Invariant Basis for Natural Strain which Yields Orthogonal Stress
1340 :     Response Terms in Isotropic Hyperelasticity},
1341 :     journal = {Journal of Mechanics and Physics of Solids},
1342 :     year = {2000},
1343 :     volume = {48},
1344 :     pages = {2445--2465},
1345 :     file = {criscione00AnInvariantBasisForNaturalStrainWhichYieldsOrthogonalStressResponse.pdf:criscione00AnInvariantBasisForNaturalStrainWhichYieldsOrthogonalStressResponse.pdf:PDF},
1346 :     owner = {gk},
1347 :     timestamp = {2007.07.30}
1348 :     }
1349 :    
1350 :     @INPROCEEDINGS{GLK:Crossno1999,
1351 :     author = {Patricia Crossno and Edward Angel},
1352 :     title = {Visual debugging of visualization software: {A} case study for particle
1353 :     systems},
1354 :     booktitle = VIS,
1355 :     year = {1999},
1356 :     pages = {417--420},
1357 :     file = {crossnoVIS99VisualDebuggingOfVisualizationSoftwareACaseStudyForParticleSystems.pdf:crossnoVIS99VisualDebuggingOfVisualizationSoftwareACaseStudyForParticleSystems.pdf:PDF},
1358 :     keywords = {particles},
1359 :     owner = {gk},
1360 :     timestamp = {2008.03.26}
1361 :     }
1362 :    
1363 :     @INPROCEEDINGS{GLK:Crossno1997,
1364 :     author = {Patricia Crossno and Edward Angel},
1365 :     title = {Isosurface Extraction Using Particle Systems},
1366 :     booktitle = VIS,
1367 :     year = {1997},
1368 :     pages = {495--498},
1369 :     file = {crossnoVIS97IsosurfaceExtractionUsingParticleSystems.pdf:crossnoVIS97IsosurfaceExtractionUsingParticleSystems.pdf:PDF},
1370 :     keywords = {particles},
1371 :     owner = {gk},
1372 :     review = {very much based on witkin+heckbert (gaussian, split/kill,},
1373 :     timestamp = {2008.03.21}
1374 :     }
1375 :    
1376 :     @ARTICLE{GLK:Cs'ebfalvi2001,
1377 :     author = {Bal{\'a}zs Cs{\'e}bfalvi and Lukas Mroz and Helwig Hauser and Andreas
1378 :     K{\"o}nig and Eduard Gr{\"o}ller},
1379 :     title = {Fast Visualization of Object Contours by Non-Photorealistic Volume
1380 :     Rendering},
1381 :     journal = {Computer Graphics Forum},
1382 :     year = {2001},
1383 :     volume = {20},
1384 :     pages = {452--460},
1385 :     number = {3},
1386 :     doi = {10.1111/1467-8659.00538},
1387 :     file = {csebfalviEG01FastVisualizationOfObjectContoursByNonPhotorealisticVolumeRendering.pdf:csebfalviEG01FastVisualizationOfObjectContoursByNonPhotorealisticVolumeRendering.pdf:PDF},
1388 :     owner = {gk},
1389 :     timestamp = {2008.01.21}
1390 :     }
1391 :    
1392 :     @ARTICLE{GLK:Damon1999,
1393 :     author = {James Damon},
1394 :     title = {Properties of Ridges and Cores for Two-Dimensional Images},
1395 :     journal = JMIV,
1396 :     year = {1999},
1397 :     volume = {10},
1398 :     pages = {163--174},
1399 :     number = {4},
1400 :     month = {Dec},
1401 :     file = {damonJMIV99PropertiesOfRidgesAndCoresFor2DImages.pdf:damonJMIV99PropertiesOfRidgesAndCoresFor2DImages.pdf:PDF},
1402 :     keywords = {ridges, cores, scale-space},
1403 :     owner = {gk},
1404 :     timestamp = {2008.04.03}
1405 :     }
1406 :    
1407 :     @INPROCEEDINGS{GLK:dauguetMICCAI06,
1408 :     author = {Julien Dauguet and Sharon Peled and Vladimir Berezovskii and Thierry
1409 :     Delzescaux and Simon K. Warfield and Richard Born and Carl-Fredrik
1410 :     Westin},
1411 :     title = {{3D} Histological Reconstruction of Fiber Tracts and Direct Comparison
1412 :     with Diffusion Tensor {MRI} Tractography},
1413 :     booktitle = MICCAI # { 2006},
1414 :     year = {2006},
1415 :     series = {Lecture Notes in Computer Science 4190},
1416 :     pages = {109--116},
1417 :     address = {Copenhagen, Denmark},
1418 :     month = {October},
1419 :     file = {dauguetMICCAI063DHistologicalReconstructionOfFiberTractsAndDirectComparisonWithDiffusionTensorMRITractography.pdf:dauguetMICCAI063DHistologicalReconstructionOfFiberTractsAndDirectComparisonWithDiffusionTensorMRITractography.pdf:PDF},
1420 :     owner = {gk},
1421 :     timestamp = {2007.07.30}
1422 :     }
1423 :    
1424 :     @INPROCEEDINGS{GLK:Demiralp2006,
1425 :     author = {\c{C}a\u{g}atay Demiralp and Song Zhang and David F. Tate and Stephen
1426 :     Correia and David H. Laidlaw},
1427 :     title = {Connectivity-aware sectional visualization of {3D} {DTI} volumes
1428 :     using perceptual flat-torus coloring and edge rendering},
1429 :     booktitle = {Proceedings of Eurographics},
1430 :     year = {2006},
1431 :     editor = {D. W. Fellner and C. Hansen},
1432 :     file = {demiralpEG06ConnectivityAwareSectionalVisualizationOf3DDTIVolumesUsingPerceptualFlatTorusColoringAndEdgeRendering.pdf:demiralpEG06ConnectivityAwareSectionalVisualizationOf3DDTIVolumesUsingPerceptualFlatTorusColoringAndEdgeRendering.pdf:PDF},
1433 :     owner = {gk},
1434 :     review = {includes a notion of edge detection based on long-range connectivity},
1435 :     timestamp = {2008.07.15}
1436 :     }
1437 :    
1438 :     @ARTICLE{GLK:Descoteaux2006,
1439 :     author = {M Descoteaux and E Angelino and S Fitzgibbons and R Deriche},
1440 :     title = {Apparent Diffusion Coefficients from High Angular Resolution Diffusion
1441 :     Imaging: Estimation and Applications},
1442 :     journal = MRM,
1443 :     year = {2006},
1444 :     volume = {56},
1445 :     pages = {395--410},
1446 :     file = {descoteauxMRM06ApparentDiffusionCoefficientsFromHighAngularResolutionDiffusionImagingEstimationAndApplications.pdf:descoteauxMRM06ApparentDiffusionCoefficientsFromHighAngularResolutionDiffusionImagingEstimationAndApplications.pdf:PDF},
1447 :     owner = {gk},
1448 :     timestamp = {2007.07.16}
1449 :     }
1450 :    
1451 :     @INPROCEEDINGS{GLK:Descoteaux2007,
1452 :     author = {Maxime Descoteaux and Christophe Lenglet and Rachid Deriche},
1453 :     title = {Diffusion tensor sharpening improves white matter tractography},
1454 :     booktitle = {Proceedings of SPIE (Medical Imaging 2007: Image Processing)},
1455 :     year = {2007},
1456 :     volume = {6512},
1457 :     number = {1},
1458 :     pages = {65121J},
1459 :     publisher = {SPIE},
1460 :     note = {editor = Josien P. W. Pluim and Joseph M. Reinhardt},
1461 :     doi = {10.1117/12.708988},
1462 :     file = {descoteaux07DiffusionTensorSharpeningImprovesWhiteMatterTractography.pdf:descoteaux07DiffusionTensorSharpeningImprovesWhiteMatterTractography.pdf:PDF},
1463 :     owner = {gk},
1464 :     timestamp = {2007.11.12}
1465 :     }
1466 :    
1467 :     @ARTICLE{GLK:Diebel2006,
1468 :     author = {James R. Diebel and Sebastian Thrun and Michael Br\"{u}nig},
1469 :     title = {A {B}ayesian method for probable surface reconstruction and decimation},
1470 :     journal = {ACM Trans. on Graphics},
1471 :     year = {2006},
1472 :     volume = {25},
1473 :     pages = {39--59},
1474 :     number = {1},
1475 :     doi = {10.1145/1122501.1122504},
1476 :     file = {diebelTOG06ABayesianMethodForProbableSurfaceReconstructionAndDecimation.pdf:diebelTOG06ABayesianMethodForProbableSurfaceReconstructionAndDecimation.pdf:PDF},
1477 :     keywords = {Bayes},
1478 :     owner = {gk},
1479 :     timestamp = {2008.03.26}
1480 :     }
1481 :    
1482 :     @ARTICLE{GLK:Djurcilova2002,
1483 :     author = {Suzana Djurcilova and Kwansik Kima and Pierre Lermusiaux and Alex
1484 :     Pang},
1485 :     title = {Visualizing scalar volumetric data with uncertainty},
1486 :     journal = {Computers and Graphics},
1487 :     year = {2002},
1488 :     volume = {26},
1489 :     pages = {239--248},
1490 :     file = {djurcilov02VolumeRenderingDataWithUncertaintyInformation.pdf:djurcilov02VolumeRenderingDataWithUncertaintyInformation.pdf:PDF},
1491 :     owner = {gk},
1492 :     timestamp = {2008.05.02}
1493 :     }
1494 :    
1495 :     @ARTICLE{GLK:Dougherty2005a,
1496 :     author = {Robert F. Dougherty and Michal Ben-Shachar and Roland Bammer and
1497 :     Alyssa A. Brewer and Brian A. Wandell},
1498 :     title = {Functional organization of human occipital-callosal fiber tracts},
1499 :     journal = PNAS,
1500 :     year = {2005},
1501 :     volume = {102},
1502 :     pages = {7350--7355},
1503 :     number = {20},
1504 :     month = {May},
1505 :     doi = {10.1073/pnas.0500003102},
1506 :     file = {doughertyPNAS05FunctionalOrganizationOfHumanOccipitalCallosalFiberTracts.pdf:doughertyPNAS05FunctionalOrganizationOfHumanOccipitalCallosalFiberTracts.pdf:PDF},
1507 :     keywords = {vaina},
1508 :     owner = {gk},
1509 :     timestamp = {2007.09.17}
1510 :     }
1511 :    
1512 :     @ARTICLE{GLK:Dougherty2005,
1513 :     author = {R F Dougherty and M Ben-Shachar and G Deutsch and P Potanina and
1514 :     R Bammer and B A Wandell},
1515 :     title = {Occipital-{C}allosal Pathways in Children: {V}alidation and Atlas
1516 :     Development},
1517 :     journal = ANYAS,
1518 :     year = {2005},
1519 :     volume = {1064},
1520 :     pages = {98--112},
1521 :     file = {doughertyANYAS05OccipitalCallosalPathwaysInChildrenValidationAndAtlasDevelopment.pdf:doughertyANYAS05OccipitalCallosalPathwaysInChildrenValidationAndAtlasDevelopment.pdf:PDF},
1522 :     keywords = {vaina},
1523 :     owner = {gk},
1524 :     timestamp = {2007.07.07}
1525 :     }
1526 :    
1527 :     @ARTICLE{GLK:drebin88,
1528 :     author = {RA Drebin and L Carpenter and P Hanrahan},
1529 :     title = {Volume Rendering},
1530 :     journal = {Computer Graphics},
1531 :     year = {1988},
1532 :     volume = {22},
1533 :     pages = {65--74},
1534 :     number = {4},
1535 :     booktitle = {Proceedings of ACM SIGGRAPH 88},
1536 :     owner = {gk},
1537 :     publisher = {Addison Wesley},
1538 :     timestamp = {2009.12.16}
1539 :     }
1540 :    
1541 :     @BOOK{GLK:dummitfoote,
1542 :     title = {Abstract Algebra},
1543 :     publisher = {Prentice-Hall, Inc.},
1544 :     year = {1991},
1545 :     author = {D S Dummit and R M Foote},
1546 :     address = {New Jersey},
1547 :     owner = {gk},
1548 :     timestamp = {2007.07.30}
1549 :     }
1550 :    
1551 :     @MISC{GLK:Eberly3x3Eigen2008,
1552 :     author = {David Eberly},
1553 :     title = {Eigensystems for 3~x~3 Symmetric Matrices (Revisited)},
1554 :     howpublished = {http://www.geometrictools.com/Documentation/EigenSymmetric3x3.pdf},
1555 :     month = {March},
1556 :     year = {2008},
1557 :     file = {eberly08EigenSymmetric3x3.pdf:eberly08EigenSymmetric3x3.pdf:PDF},
1558 :     owner = {gk},
1559 :     timestamp = {2008.04.05},
1560 :     url = {http://www.geometrictools.com/Documentation/EigenSymmetric3x3.pdf}
1561 :     }
1562 :    
1563 :     @BOOK{GLK:Eberly1996,
1564 :     title = {Ridges in Image and Data Analysis},
1565 :     publisher = {Kluwer Academic Publishers},
1566 :     year = {1996},
1567 :     author = {D Eberly},
1568 :     file = {eberlyBOOK96RidgesInImageAndDataAnalysis.pdf:eberlyBOOK96RidgesInImageAndDataAnalysis.pdf:PDF},
1569 :     owner = {gk},
1570 :     review = {Eberly says that the JMIV 94 paper is subsumed by the book},
1571 :     timestamp = {2007.07.07}
1572 :     }
1573 :    
1574 :     @ARTICLE{GLK:Eberly1994,
1575 :     author = {D Eberly and R Gardner and B Morse and S Pizer},
1576 :     title = {Ridges for Image Analysis},
1577 :     journal = JMIV,
1578 :     year = {1994},
1579 :     volume = {4},
1580 :     pages = {353--373},
1581 :     number = {4},
1582 :     comment = {don't actually know if this is the PDF for this article; in any case
1583 :     Eberly says the content is subsumed by the book},
1584 :     doi = {10.1007/BF01262402},
1585 :     file = {eberly94RidgesForImageAnalysis.pdf:eberly94RidgesForImageAnalysis.pdf:PDF},
1586 :     owner = {gk},
1587 :     timestamp = {2007.07.07}
1588 :     }
1589 :    
1590 :     @INPROCEEDINGS{GLK:Eberly1994a,
1591 :     author = {David Eberly and Stephen M. Pizer},
1592 :     title = {Ridge flow models for image segmentation},
1593 :     booktitle = {In SPIE Proceedings on Mathematical Methods in Medical Imaging II},
1594 :     year = {1994},
1595 :     pages = {54--64},
1596 :     file = {:Users/gk/lit/pdf/eberly94ridgeflow.pdf:PDF},
1597 :     owner = {gk},
1598 :     timestamp = {2009.03.21}
1599 :     }
1600 :    
1601 :     @TECHREPORT{GLK:Eberly1993,
1602 :     author = {David Eberly and Stephen M Pizer},
1603 :     title = {Ridge flow models for image segmentation},
1604 :     institution = {University of North Carolina at Chapel Hill},
1605 :     year = {1993},
1606 :     number = {TR93-056},
1607 :     file = {eberlyTR93RidgeFlowModelsForImageSegmentation.pdf:eberlyTR93RidgeFlowModelsForImageSegmentation.pdf:PDF},
1608 :     keywords = {creases},
1609 :     owner = {gk},
1610 :     timestamp = {2008.04.05}
1611 :     }
1612 :    
1613 :     @INPROCEEDINGS{GLK:Ebert2000,
1614 :     author = {David Ebert and Penny Rheingans},
1615 :     title = {Volume Illustration: {N}on-Photorealistic Rendering of Volume Models},
1616 :     booktitle = VIS,
1617 :     year = {2000},
1618 :     pages = {195--202},
1619 :     file = {ebertVis00VolumeIllustrationNonPhotorealisticRenderingOfVolumeModels.pdf:ebertVis00VolumeIllustrationNonPhotorealisticRenderingOfVolumeModels.pdf:PDF},
1620 :     owner = {gk},
1621 :     timestamp = {2008.01.21}
1622 :     }
1623 :    
1624 :     @ARTICLE{GLK:Ellegod2006,
1625 :     author = {Jacob Ellegod and Chris C Hanstock and Christian Beaulieu},
1626 :     title = {Diffusion Tensor Spectroscopy ({DTS}) of Human Brain},
1627 :     journal = MRM,
1628 :     year = {2006},
1629 :     volume = {55},
1630 :     pages = {1--8},
1631 :     file = {ellegoodMRM06DiffusionTensorSpectroscopyOfHumanBrain.pdf:ellegoodMRM06DiffusionTensorSpectroscopyOfHumanBrain.pdf:PDF},
1632 :     owner = {gk},
1633 :     timestamp = {2007.07.11}
1634 :     }
1635 :    
1636 :     @INPROCEEDINGS{GLK:Enders2005,
1637 :     author = {Frank Enders and Natascha Sauber and Dorit Merhof and Peter Hastreiter
1638 :     and Christopher Nimsky and Marc Stamminger},
1639 :     title = {Visualization of White Matter Tracts with Wrapped Streamlines},
1640 :     booktitle = VIS,
1641 :     year = {2005},
1642 :     pages = {51--58},
1643 :     file = {endersVIS05VisualizationOfWhiteMatterTractsWithWrappedStreamlines.pdf:endersVIS05VisualizationOfWhiteMatterTractsWithWrappedStreamlines.pdf:PDF},
1644 :     keywords = {tractography neurosurgery},
1645 :     owner = {gk},
1646 :     timestamp = {2008.11.12}
1647 :     }
1648 :    
1649 :     @ARTICLE{GLK:ennisMRM05,
1650 :     author = {Daniel B. Ennis and Gordon Kindlman and Ignacio Rodriguez and Patrick
1651 :     A. Helm and Elliot R. McVeigh},
1652 :     title = {Visualization of tensor fields using superquadric glyphs},
1653 :     journal = MRM,
1654 :     year = {2005},
1655 :     volume = {53},
1656 :     pages = {169--176},
1657 :     month = {January},
1658 :     file = {:Users/gk/lit/pdf/ennisMRM05VisualizationOfTensorFieldsUsingSuperquadricGlyphs.pdf:PDF},
1659 :     issue = {1},
1660 :     owner = {gk},
1661 :     timestamp = {2007.07.30}
1662 :     }
1663 :    
1664 :     @ARTICLE{GLK:Ennis2006,
1665 :     author = {D B Ennis and G Kindlmann},
1666 :     title = {Orthogonal tensor invariants and the analysis of diffusion tensor
1667 :     magnetic resonance images},
1668 :     journal = MRM,
1669 :     year = {2006},
1670 :     volume = {55},
1671 :     pages = {136--146},
1672 :     number = {1},
1673 :     file = {ennisMRM06OrthogonalTensorInvariantsAndTheAnalysisOfDTMRI.pdf:ennisMRM06OrthogonalTensorInvariantsAndTheAnalysisOfDTMRI.pdf:PDF},
1674 :     owner = {gk},
1675 :     review = {thomas schultz says Sept 17 2008
1676 :    
1677 :    
1678 :     Hi,
1679 :    
1680 :    
1681 :     sure - but it's really a minor thing, hidden in the formal proof,
1682 :     and it does not change the final result: In the MRM paper in Eq.
1683 :     [B26], the inverse of norm(A) is taken. In Eq. [B31], where [B26]
1684 :     is contracted with [B29], this inverse is neglected. That is, Eq.
1685 :     [B31] should really read
1686 :    
1687 :    
1688 :     sqrt(3/2)*(norm(A)^(-1) A:PHI - norm(A tilde) norm(A)^(-4) (A:A) )
1689 :    
1690 :    
1691 :     However, since this only changes the scaling, it does not affect the
1692 :     overall validity of the proof.},
1693 :     timestamp = {2007.07.06}
1694 :     }
1695 :    
1696 :     @ARTICLE{GLK:Entezari2008,
1697 :     author = {Alireza Entezari and Dimitri Van DeVille and Torsten M\"{o}ller},
1698 :     title = {Practical Box Splines for Reconstruction on the Body Centered Cubic
1699 :     Lattice},
1700 :     journal = TVCG,
1701 :     year = {2008},
1702 :     volume = {14},
1703 :     pages = {313--328},
1704 :     number = {2},
1705 :     month = {March--April},
1706 :     doi = {10.1109/TVCG.2007.70429},
1707 :     file = {entezariTVCG08PracticalBoxSplinesForReconstructionOnTheBodyCenteredCubicLattice.pdf:entezariTVCG08PracticalBoxSplinesForReconstructionOnTheBodyCenteredCubicLattice.pdf:PDF},
1708 :     owner = {gk},
1709 :     timestamp = {2008.05.02}
1710 :     }
1711 :    
1712 :     @ARTICLE{GLK:Entezari2006,
1713 :     author = {Alireza Entezari and Torsten M\"{o}ller},
1714 :     title = {Extensions of the {Z}wart-{P}owell Box Spline for Volumetric Data
1715 :     Reconstruction on the Cartesian Lattice},
1716 :     journal = TVCG,
1717 :     year = {2006},
1718 :     volume = {12},
1719 :     pages = {1337--1344},
1720 :     number = {5},
1721 :     month = {Sept--Oct},
1722 :     doi = {10.1109/TVCG.2006.141},
1723 :     file = {entezariTVCG06ExtensionsOfTheZwartPowellBoxSplineForVolumetricDataReconstructionOnTheCartesianLattice.pdf:entezariTVCG06ExtensionsOfTheZwartPowellBoxSplineForVolumetricDataReconstructionOnTheCartesianLattice.pdf:PDF},
1724 :     owner = {gk},
1725 :     timestamp = {2008.05.02}
1726 :     }
1727 :    
1728 :     @INPROCEEDINGS{GLK:Entezeri2004,
1729 :     author = {Alireza Entezeri and Ramsay Dyer and Torsten M\"{o}ller},
1730 :     title = {Linear and Cubic Box Splines for the Body Centered Cubic Lattice},
1731 :     booktitle = VIS,
1732 :     year = {2004},
1733 :     pages = {11--18},
1734 :     doi = {10.1109/VISUAL.2004.65},
1735 :     file = {entezariVIS04LinearAndCubicBoxSplinesForTheBodyCenteredCubicLattice.pdf:entezariVIS04LinearAndCubicBoxSplinesForTheBodyCenteredCubicLattice.pdf:PDF},
1736 :     owner = {gk},
1737 :     timestamp = {2008.05.02}
1738 :     }
1739 :    
1740 :     @ARTICLE{GLK:feddernIJCV06,
1741 :     author = {C Feddern and J Weickert and B Burgeth and M Welk},
1742 :     title = {Curvature-Driven {PDE} Methods for Matrix-Valued Images},
1743 :     journal = IJCV,
1744 :     year = {2006},
1745 :     volume = {69},
1746 :     pages = {93-107},
1747 :     number = {1},
1748 :     month = {August},
1749 :     file = {feddernPP04CurvatureDrivenPDEMethodsForMatrixValuedImages.pdf:feddernPP04CurvatureDrivenPDEMethodsForMatrixValuedImages.pdf:PDF},
1750 :     owner = {gk},
1751 :     review = {Tom Schultz says that except for a practically insignificant problem,
1752 :     this ensures positive-definiteness.},
1753 :     timestamp = {2007.07.30}
1754 :     }
1755 :    
1756 :     @TECHREPORT{GLK:Felzenszwalb2004,
1757 :     author = {Pedro F. Felzenszwalb and Daniel P. Huttenlocher},
1758 :     title = {Distance Transforms of Sampled Functions},
1759 :     institution = {Cornell Computing and Information Science},
1760 :     year = {2004},
1761 :     number = {TR2004-1963},
1762 :     file = {:Users/gk/lit/pdf/felzenszwalbTR04DistanceTransformsOfSampledFunctions.pdf:PDF},
1763 :     owner = {gk},
1764 :     timestamp = {2009.10.05}
1765 :     }
1766 :    
1767 :     @ARTICLE{GLK:Fergus2006,
1768 :     author = {Rob Fergus and Barun Singh and Aaron Hertzmann and Sam T. Roweis
1769 :     and William T. Freeman},
1770 :     title = {Removing Camera Shake From A Single Photograph},
1771 :     journal = {ACM Trans. on Graphics (Proc. SIGGRAPH)},
1772 :     year = {2006},
1773 :     volume = {25},
1774 :     pages = {787--794},
1775 :     number = {3},
1776 :     month = {July},
1777 :     doi = {10.1145/1141911.1141956},
1778 :     file = {fergusSIGGRAPH06RemovingCameraShakeFromASinglePhotograph.pdf:fergusSIGGRAPH06RemovingCameraShakeFromASinglePhotograph.pdf:PDF},
1779 :     keywords = {bayes},
1780 :     owner = {gk},
1781 :     timestamp = {2008.04.05}
1782 :     }
1783 :    
1784 :     @TECHREPORT{GLK:Fidrich1996,
1785 :     author = {M{\'a}rta Fidrich},
1786 :     title = {Iso-surface Extraction in {4D} with Applications related to Scale
1787 :     Space},
1788 :     institution = INRIA # { (Sophia-Antipolis)},
1789 :     year = {1996},
1790 :     number = {2833},
1791 :     month = {March},
1792 :     file = {fidrichTR96IsosurfaceExtractionIn4DWithApplicationsRelatedToScaleSpace.pdf:fidrichTR96IsosurfaceExtractionIn4DWithApplicationsRelatedToScaleSpace.pdf:PDF},
1793 :     owner = {gk},
1794 :     timestamp = {2008.03.26}
1795 :     }
1796 :    
1797 :     @ARTICLE{GLK:field05,
1798 :     author = {A S Field and Y-C Wu and A L Alexander},
1799 :     title = {Principal Diffusion Direction In Peritumoral Fiber Tracts},
1800 :     journal = {Annals of the New York Academy of Sciences},
1801 :     year = {2005},
1802 :     volume = {1064},
1803 :     pages = {193--201},
1804 :     file = {fieldANYAS05PrincipalDiffusionDirectionInPeritumoralFiberTracts.pdf:fieldANYAS05PrincipalDiffusionDirectionInPeritumoralFiberTracts.pdf:PDF},
1805 :     keywords = {neurosurgery},
1806 :     owner = {gk},
1807 :     timestamp = {2007.07.30}
1808 :     }
1809 :    
1810 :     @INPROCEEDINGS{GLK:Figueiredo1992,
1811 :     author = {Luiz Henrique de Figueiredo and Jonas de Miranda Gomes and Demetri
1812 :     Terzopoulos and Luiz Velho},
1813 :     title = {Physically-based methods for polygonization of implicit surfaces},
1814 :     booktitle = {Proc. Graphics Interface},
1815 :     year = {1992},
1816 :     pages = {250--257},
1817 :     file = {defigueiredo92PhysicallyBasedMethodsForPolygonizationOfImplicitSurfaces.pdf:defigueiredo92PhysicallyBasedMethodsForPolygonizationOfImplicitSurfaces.pdf:PDF},
1818 :     keywords = {particles},
1819 :     owner = {gk},
1820 :     review = {actually, two methods for making meshes of implicit surfaces:
1821 :    
1822 :    
1823 :     either 1): for implicit function F and implicit surface F = 0, uses
1824 :     the gradient of |F| as a force field (or does he mean gradient of
1825 :     -|F|?) to move non-interacting particles onto surface, and then redistributes
1826 :     them using Turk91 (reaction diffusion!) or Szeliski&Tonneson&91 (oriented
1827 :     particles, lennard-jones).
1828 :    
1829 :    
1830 :     or 2): create a 3-D mesh of the volume containing the implicit surface,
1831 :     by moving vertices with a weird force field that pushes particles
1832 :     off the immediate surface, and also pulls far away particles towards
1833 :     the surface, and then, using a proto-marching cubes thing to polygonalize
1834 :     an approximation to the implicit surface
1835 :    
1836 :    
1837 :     interestingly, references a bunch of things (including marching cubes)
1838 :     as variants of "Allgower's method"},
1839 :     timestamp = {2008.03.21}
1840 :     }
1841 :    
1842 :     @INPROCEEDINGS{GLK:fillardISBI06,
1843 :     author = {P Fillard and V Arsigny and X Pennec and N Ayache},
1844 :     title = {Clinical {DT-MRI} estimation, smoothing and fiber tracking with {L}og-{E}uclidean
1845 :     metrics},
1846 :     booktitle = ISBI # { 2006},
1847 :     year = {2006},
1848 :     series = {LNCS},
1849 :     pages = {786--789},
1850 :     address = {Arlington, Virginia, USA},
1851 :     month = {April},
1852 :     file = {fillardISBI06ClinicalDT-MRIEstimationSmoothingAndFiberTrackingWithLogEuclideanMetrics.pdf:fillardISBI06ClinicalDT-MRIEstimationSmoothingAndFiberTrackingWithLogEuclideanMetrics.pdf:PDF},
1853 :     owner = {gk},
1854 :     timestamp = {2007.07.16}
1855 :     }
1856 :    
1857 :     @INCOLLECTION{GLK:Fischler1987,
1858 :     author = {Martin A. Fischler and Robert C. Bolles},
1859 :     title = {Random sample consensus: {A} paradigm for model fitting with applications
1860 :     to image analysis and automated cartography},
1861 :     booktitle = {Readings in computer vision: issues, problems, principles, and paradigms},
1862 :     publisher = {Morgan Kaufmann Publishers Inc.},
1863 :     year = {1987},
1864 :     pages = {726--740},
1865 :     address = {San Francisco, CA, USA},
1866 :     file = {fischler81RandomSampleConsensusAParadigmForModelFittingWithApplicationsToImageAnalysisAndAutomatedCartography.pdf:fischler81RandomSampleConsensusAParadigmForModelFittingWithApplicationsToImageAnalysisAndAutomatedCartography.pdf:PDF},
1867 :     owner = {gk},
1868 :     timestamp = {2008.01.21}
1869 :     }
1870 :    
1871 :     @INPROCEEDINGS{GLK:Fleischer1995,
1872 :     author = {Kurt W. Fleischer and David H. Laidlaw and Bena L. Currin and Alan
1873 :     H. Barr},
1874 :     title = {Cellular texture generation},
1875 :     booktitle = {SIGGRAPH '95: Proceedings of the 22nd annual conference on Computer
1876 :     graphics and interactive techniques},
1877 :     year = {1995},
1878 :     pages = {239--248},
1879 :     doi = {10.1145/218380.218447},
1880 :     file = {fleischerSIGGRAPH95CellularTextureGeneration.pdf:fleischerSIGGRAPH95CellularTextureGeneration.pdf:PDF},
1881 :     keywords = {particles},
1882 :     owner = {gk},
1883 :     timestamp = {2008.03.26}
1884 :     }
1885 :    
1886 :     @ARTICLE{GLK:Fletcher2007,
1887 :     author = {P. Thomas Fletcher and Sarang Joshi},
1888 :     title = {Riemannian geometry for the statistical analysis of diffusion tensor
1889 :     data},
1890 :     journal = {Signal Processing},
1891 :     year = {2007},
1892 :     volume = {87},
1893 :     pages = {250--262},
1894 :     doi = {10.1016/j.sigpro.2005.12.018},
1895 :     file = {fletcherSP07RiemannianGeometryForTheStatisticalAnalysisOfDiffusionTensorData.pdf:fletcherSP07RiemannianGeometryForTheStatisticalAnalysisOfDiffusionTensorData.pdf:PDF},
1896 :     owner = {gk},
1897 :     review = {Says he's the same as batchelor, which I say is same as Lenglet},
1898 :     timestamp = {2008.01.23}
1899 :     }
1900 :    
1901 :     @INPROCEEDINGS{GLK:Fletcher2004,
1902 :     author = {P. Thomas Fletcher and Sarang Joshi},
1903 :     title = {Principal Geodesic Analysis on Symmetric Spaces: Statistics of Diffusion
1904 :     Tensors},
1905 :     booktitle = {Proceedings ECCV 2004 Workshop on Computer Vision Approaches to Medical
1906 :     Image Analysis (CVAMIA)},
1907 :     year = {2004},
1908 :     volume = {31107},
1909 :     series = {LNCS},
1910 :     pages = {87--98},
1911 :     publisher = {Springer-Verlag},
1912 :     file = {fletcherXXPrincipalGeodesicAnalysisOnSymmetricSpacesStatisticsOfDiffusionTensors.pdf:fletcherXXPrincipalGeodesicAnalysisOnSymmetricSpacesStatisticsOfDiffusionTensors.pdf:PDF},
1913 :     owner = {gk},
1914 :     timestamp = {2007.07.16}
1915 :     }
1916 :    
1917 :     @ARTICLE{GLK:Florack2001,
1918 :     author = {Luc Florack},
1919 :     title = {Non-Linear Scale-Spaces Isomorphic to the Linear Case with Applications
1920 :     to Scalar, Vector and Multispectral Images},
1921 :     journal = IJCV,
1922 :     year = {2001},
1923 :     volume = {15},
1924 :     pages = {39--53},
1925 :     number = {1--2},
1926 :     file = {florackIJCV01NonlinearScaleSpaceIsomorphicToTheLinearCaseWithApplicationsToScalarVectorAndMultispectralImages.pdf:florackIJCV01NonlinearScaleSpaceIsomorphicToTheLinearCaseWithApplicationsToScalarVectorAndMultispectralImages.pdf:PDF},
1927 :     keywords = {scale-space},
1928 :     owner = {gk},
1929 :     review = {There's only half a page about non-scalar images, seems purely theoretical},
1930 :     timestamp = {2008.04.05}
1931 :     }
1932 :    
1933 :     @ARTICLE{GLK:Florack1996,
1934 :     author = {Luc Florack and Bart ter Haar Romeny and Max Viergever and Jan Koenderink},
1935 :     title = {The {G}aussian Scale-Space Paradigm and the Multiscale Local Jet},
1936 :     journal = IJCV,
1937 :     year = {1996},
1938 :     volume = {18},
1939 :     pages = {61--75},
1940 :     number = {1},
1941 :     month = {April},
1942 :     file = {florack96TheGaussianScaleSpaceParadigmAndTheMultiscaleLocalJet.pdf:florack96TheGaussianScaleSpaceParadigmAndTheMultiscaleLocalJet.pdf:PDF},
1943 :     keywords = {scale-space},
1944 :     owner = {gk},
1945 :     review = {I think this implicitly talks about sampling scale space with Hermite
1946 :     splines, but I can't be sure...},
1947 :     timestamp = {2008.04.05}
1948 :     }
1949 :    
1950 :     @ARTICLE{GLK:Florack2000,
1951 :     author = {Luc Florack and Arjan Kuijper},
1952 :     title = {The Topological Structure of Scale-Space Images},
1953 :     journal = JMIV,
1954 :     year = {2000},
1955 :     volume = {12},
1956 :     pages = {65--79},
1957 :     number = {1},
1958 :     file = {florack00TheTopologicalStructureOfScaleSpaceImages.pdf:florack00TheTopologicalStructureOfScaleSpaceImages.pdf:PDF},
1959 :     keywords = {scale-space},
1960 :     owner = {gk},
1961 :     review = {Bram Platel says that this is the paper that talks about interpolating/predicting
1962 :     the location of critical points between scales, but it says for experimental
1963 :     details see GLK:Kuijper1999},
1964 :     timestamp = {2008.04.05}
1965 :     }
1966 :    
1967 :     @INPROCEEDINGS{GLK:Florack2008,
1968 :     author = {L. M. J. Florack and L. J. Astola},
1969 :     title = {A Multi-Resolution Framework for Diffusion Tensor Images},
1970 :     booktitle = {Proc. CVPR Workshop on Tensors in Image Processing and Computer Vision},
1971 :     year = {2008},
1972 :     pages = {1--7},
1973 :     month = {June},
1974 :     organization = {IEEE},
1975 :     comment = {editor = Aja~Fern{\'{a}}ndez, S. and de~Luis~Garcia, R.},
1976 :     file = {:Users/gk/lit/pdf/florack08AMultiResolutionFrameworkForDTI.pdf:PDF},
1977 :     owner = {gk},
1978 :     timestamp = {2009.07.03}
1979 :     }
1980 :    
1981 :     @ARTICLE{GLK:Florack1994,
1982 :     author = {L. M. J. Florack and B. M. ter Haar Romeny and J. J. Koenderink and
1983 :     M. A. Viergever},
1984 :     title = {Linear scale-space},
1985 :     journal = JMIV,
1986 :     year = {1994},
1987 :     volume = {4},
1988 :     pages = {325--351},
1989 :     number = {4},
1990 :     month = {December},
1991 :     file = {florack94LinearScaleSpace.pdf:florack94LinearScaleSpace.pdf:PDF},
1992 :     keywords = {scale-space},
1993 :     owner = {gk},
1994 :     timestamp = {2008.03.29}
1995 :     }
1996 :    
1997 :     @ARTICLE{GLK:Florack1992,
1998 :     author = {Luc M J Florack and Bart M ter Haar Romeny and Jan J Koenderink and
1999 :     Max A Viergever},
2000 :     title = {Scale and the differential structure of images},
2001 :     journal = {Image and Vision Computing},
2002 :     year = {1992},
2003 :     volume = {10},
2004 :     pages = {376--388},
2005 :     number = {6},
2006 :     note = {Special issue: Information Processing in Medical Imaging 1991},
2007 :     file = {florack92ScaleAndTheDifferentialStructureOfImages.pdf:florack92ScaleAndTheDifferentialStructureOfImages.pdf:PDF},
2008 :     keywords = {scale-space},
2009 :     owner = {gk},
2010 :     timestamp = {2008.04.05}
2011 :     }
2012 :    
2013 :     @ARTICLE{GLK:Frangi1999,
2014 :     author = {Alejandro F. Frangi and Wiro J. Niessen and Romhild M. Hoogeveen
2015 :     and Theo van Walsum and Max A. Viergever},
2016 :     title = {Model-Based Quantitation of 3-{D} Magnetic Resonance Angiographic
2017 :     Images},
2018 :     journal = TMI,
2019 :     year = {1999},
2020 :     volume = {18},
2021 :     pages = {946--956},
2022 :     number = {10},
2023 :     owner = {gk},
2024 :     timestamp = {2008.03.29}
2025 :     }
2026 :    
2027 :     @ARTICLE{GLK:Fridman2004,
2028 :     author = {Yonatan Fridman and Stephen M. Pizer and Stephen Aylward and Elizabeth
2029 :     Bullitt},
2030 :     title = {Extracting branching tubular object geometry via cores},
2031 :     journal = MedIA,
2032 :     year = {2004},
2033 :     volume = {8},
2034 :     pages = {169--176},
2035 :     number = {3},
2036 :     month = {Sept},
2037 :     file = {fridmanMEDIA04ExtractingBranchingTubularObjectGeometryViaCores.pdf:fridmanMEDIA04ExtractingBranchingTubularObjectGeometryViaCores.pdf:PDF},
2038 :     keywords = {cores},
2039 :     owner = {gk},
2040 :     timestamp = {2008.04.05}
2041 :     }
2042 :    
2043 :     @INPROCEEDINGS{GLK:Fritsch1994,
2044 :     author = {Daniel S. Fritsch and Stephen M. Pizer and Edward Chaney and Alan
2045 :     Liu and Suraj Raghavan and Tushar Shah},
2046 :     title = {Cores for Image Registration},
2047 :     booktitle = {Proc. SPIE Medical Imaging '94: Image Processing},
2048 :     year = {1994},
2049 :     volume = {2167},
2050 :     series = {128--142},
2051 :     month = {May},
2052 :     file = {fritsch94CoresForImageRegistration.pdf:fritsch94CoresForImageRegistration.pdf:PDF},
2053 :     keywords = {cores, registration},
2054 :     owner = {gk},
2055 :     timestamp = {2008.04.03}
2056 :     }
2057 :    
2058 :     @ARTICLE{GLK:Furst2002,
2059 :     author = {Jacob D. Furst and Stephen M. Pizer},
2060 :     title = {Optimal Parameter Height Ridges},
2061 :     journal = {Journal of Visual Communication and Image Representation},
2062 :     year = {2002},
2063 :     volume = {13},
2064 :     pages = {119--134},
2065 :     doi = {doi:10.1006/jvci.2001.0496},
2066 :     file = {furst02OptimalParameterHeightRidges.pdf:furst02OptimalParameterHeightRidges.pdf:PDF},
2067 :     keywords = {ridges},
2068 :     owner = {gk},
2069 :     timestamp = {2008.04.05}
2070 :     }
2071 :    
2072 :     @INPROCEEDINGS{GLK:Furst2001,
2073 :     author = {J D Furst and S M Pizer},
2074 :     title = {Marching Ridges},
2075 :     booktitle = {Proc. 2001 IASTED Intl. Conference on Signal and Image Processing},
2076 :     year = {2001},
2077 :     pages = {22--26},
2078 :     file = {furst01MarchingRidges.pdf:furst01MarchingRidges.pdf:PDF},
2079 :     owner = {gk},
2080 :     timestamp = {2007.07.09}
2081 :     }
2082 :    
2083 :     @INPROCEEDINGS{GLK:Furst1998,
2084 :     author = {Jacob D. Furst and Stephen M. Pizer},
2085 :     title = {Marching Optimal-Parameter Ridges: an Algorithm to Extract Shape
2086 :     Loci in 3D Images},
2087 :     booktitle = MICCAI,
2088 :     year = {1998},
2089 :     volume = {1496},
2090 :     series = {Lecture Notes in Computer Science},
2091 :     pages = {780--787},
2092 :     file = {furstMICCAI98MarchingOptimalParameterRidgesAnAlgorithmToExtractShapeLociIn3DImages.pdf:furstMICCAI98MarchingOptimalParameterRidgesAnAlgorithmToExtractShapeLociIn3DImages.pdf:PDF},
2093 :     keywords = {creases},
2094 :     owner = {gk},
2095 :     timestamp = {2008.04.05}
2096 :     }
2097 :    
2098 :     @INPROCEEDINGS{GLK:Furst1996,
2099 :     author = {J D Furst and S M Pizer and D H Eberly},
2100 :     title = {Marching Cores: {A} Method for Extracting Cores from {3D} Medical
2101 :     Images},
2102 :     booktitle = {Proceedings of IEEE Workshop on Mathematical Methods in Biomedical
2103 :     Image Analysis},
2104 :     year = {1996},
2105 :     pages = {124--130},
2106 :     month = {June},
2107 :     doi = {10.1109/MMBIA.1996.534064},
2108 :     file = {furst96MarchingCores.pdf:furst96MarchingCores.pdf:PDF},
2109 :     owner = {gk},
2110 :     timestamp = {2007.07.09}
2111 :     }
2112 :    
2113 :     @ARTICLE{GLK:forstner86,
2114 :     author = {W F{\"o}rstner},
2115 :     title = {A Feature Based Corresponding Algorithm for Image Matching},
2116 :     journal = {International Archive of Photogrammetry and Remote Sensing},
2117 :     year = {1986},
2118 :     volume = {26},
2119 :     pages = {150--166},
2120 :     owner = {gk},
2121 :     timestamp = {2007.07.30}
2122 :     }
2123 :    
2124 :     @INPROCEEDINGS{GLK:forstner87,
2125 :     author = {W F{\"o}rstner and E G{\"u}lch},
2126 :     title = {A fast operator for detection and precise location of distinct points,
2127 :     corners and centres of cicular features},
2128 :     booktitle = {Proc. ISPRS Intercommission Conference on Fast Processing of Photogrammetric
2129 :     Data},
2130 :     year = {1987},
2131 :     pages = {281--305},
2132 :     address = {Interlaken, Switzerland},
2133 :     month = {June},
2134 :     owner = {gk},
2135 :     timestamp = {2007.07.30}
2136 :     }
2137 :    
2138 :     @ARTICLE{GLK:Gauch1993,
2139 :     author = {J M Gauch and S M Pizer},
2140 :     title = {Multiresolution Analysis of Ridges and Valleys in Grey-Scale Images},
2141 :     journal = PAMI,
2142 :     year = {1993},
2143 :     volume = {15},
2144 :     pages = {635--646},
2145 :     number = {6},
2146 :     month = {June},
2147 :     file = {gauchPAMI93MultiresolutionAnalysisOfRidgesAndValleysInGrayScaleImages.pdf:gauchPAMI93MultiresolutionAnalysisOfRidgesAndValleysInGrayScaleImages.pdf:PDF},
2148 :     keywords = {ridges},
2149 :     owner = {gk},
2150 :     review = {Raul says:
2151 :    
2152 :     Gauch and Pizer proposed a multi-resolution analysis for ridge and
2153 :    
2154 :     valley lines by projecting the Hessian at different scales into the
2155 :    
2156 :     level curve tangents},
2157 :     timestamp = {2007.07.09}
2158 :     }
2159 :    
2160 :     @INPROCEEDINGS{GLK:Golland1999,
2161 :     author = {Polina Golland and W. Eric L. Grimson and Ron Kikinis},
2162 :     title = {Statistical Shape Analysis Using Fixed Topology Skeletons: {C}orpus
2163 :     Callosum Study},
2164 :     booktitle = {Proc. 16th Intl. Conf. Information Processing in Medical Imaging
2165 :     (IPMI)},
2166 :     year = {1999},
2167 :     volume = {1613},
2168 :     series = {Lecture Notes In Computer Science},
2169 :     pages = {382--387},
2170 :     file = {gollandIMPI99StatisticalShapeAnalysisUsingFixedTopologySkeletonsCorpusCallosumStudy.pdf:gollandIMPI99StatisticalShapeAnalysisUsingFixedTopologySkeletonsCorpusCallosumStudy.pdf:PDF},
2171 :     keywords = {skeletons},
2172 :     owner = {gk},
2173 :     timestamp = {2008.04.05}
2174 :     }
2175 :    
2176 :     @BOOK{GLK:Gonzalez2002,
2177 :     title = {Digital Image Processing},
2178 :     publisher = {Addison-Wesley Publishing Company},
2179 :     year = {2002},
2180 :     author = {RC Gonzalez and RE Woods},
2181 :     address = {Reading, MA},
2182 :     edition = {2nd},
2183 :     comment = {chapter = "4.4": central differences},
2184 :     owner = {gk},
2185 :     timestamp = {2007.07.06}
2186 :     }
2187 :    
2188 :     @INPROCEEDINGS{GLK:Gooch1998,
2189 :     author = {Amy Gooch and Bruce Gooch and Peter Shirley and Elaine Cohen},
2190 :     title = {A Non-Photorealistic Lighting Model for Automatic Technical Illustration},
2191 :     booktitle = SIGGRAPH,
2192 :     year = {1998},
2193 :     pages = {447--452},
2194 :     doi = {10.1145/280814.280950},
2195 :     file = {goochSIGGRAPH98ANonPhotorealisticLightingModelForAutomaticTechnicalIllustration.pdf:goochSIGGRAPH98ANonPhotorealisticLightingModelForAutomaticTechnicalIllustration.pdf:PDF},
2196 :     owner = {gk},
2197 :     timestamp = {2008.01.21}
2198 :     }
2199 :    
2200 :     @INPROCEEDINGS{GLK:Goodlett2006,
2201 :     author = {C Goodlett and B Davis and R Jean and J H Gilmore and G Gerig},
2202 :     title = {Improved Correspondence for {DTI} Population Studies Via Unbiased
2203 :     Atlas Building},
2204 :     booktitle = MICCAI # { 2006},
2205 :     year = {2006},
2206 :     series = {Lecture Notes in Computer Science 4190},
2207 :     pages = {260--267},
2208 :     address = {Copenhagen, Denmark},
2209 :     month = {October},
2210 :     file = {goodlettMICCAI06ImprovedCorrespondanceForDTIPopulationStudiesViaUnbiasedAtlasBuilding.pdf:goodlettMICCAI06ImprovedCorrespondanceForDTIPopulationStudiesViaUnbiasedAtlasBuilding.pdf:PDF},
2211 :     owner = {gk},
2212 :     timestamp = {2007.07.09}
2213 :     }
2214 :    
2215 :     @INPROCEEDINGS{GLK:Gumhold2003,
2216 :     author = {Stefan Gumhold},
2217 :     title = {Splatting Illuminated Ellipsoids with Depth Correction},
2218 :     booktitle = {Proc. Vision Modeling and Visualization},
2219 :     year = {2003},
2220 :     pages = {245--252},
2221 :     month = {Nov.},
2222 :     file = {gumhold03SplattingIlluminatedEllipsoidsWithDepthCorrection.pdf:gumhold03SplattingIlluminatedEllipsoidsWithDepthCorrection.pdf:PDF},
2223 :     owner = {gk},
2224 :     timestamp = {2008.05.02}
2225 :     }
2226 :    
2227 :     @BOOK{GLK:Haar2003,
2228 :     title = {Front-End Vision and Multi-Scale Image Analysis},
2229 :     publisher = {Kluwer Academic Publishers},
2230 :     year = {2003},
2231 :     author = {B M ter~Haar~Romeny},
2232 :     volume = {27},
2233 :     series = {Computational Imaging and Vision},
2234 :     address = {Dordrecht, The Netherlands},
2235 :     owner = {gk},
2236 :     timestamp = {2007.07.06}
2237 :     }
2238 :    
2239 :     @INPROCEEDINGS{GLK:Hadwiger2003,
2240 :     author = {Markus Hadwiger and Christoph Berger and Helwig Hauser},
2241 :     title = {High-Quality Two-Level Volume Rendering of Segmented Data Sets on
2242 :     Consumer Graphics Hardware},
2243 :     booktitle = VIS,
2244 :     year = {2003},
2245 :     pages = {301--308},
2246 :     file = {hadwigerVIS03HighQualityTwoLevelVolumeRenderingOfSegmentedDataSetsOnConsumerGraphicsHardware.pdf:hadwigerVIS03HighQualityTwoLevelVolumeRenderingOfSegmentedDataSetsOnConsumerGraphicsHardware.pdf:PDF},
2247 :     owner = {gk},
2248 :     timestamp = {2008.01.21}
2249 :     }
2250 :    
2251 :     @ARTICLE{GLK:Hadwiger2005,
2252 :     author = {Markus Hadwiger and Christian Sigg and Henning Scharsach and Khatja
2253 :     B{\"u}hler and Markus Gross},
2254 :     title = {Real-Time Ray-Casting and Advanced Shading of Discrete Isosurfaces},
2255 :     journal = {Computer Graphics Forum (Proc. Eurographics)},
2256 :     year = {2005},
2257 :     volume = {24},
2258 :     pages = {303--312},
2259 :     number = {3},
2260 :     month = {September},
2261 :     file = {hadwigerEG05RealTimeRayCastingAndAdvancedShadingOfDiscreteIsosurfaces.pdf:hadwigerEG05RealTimeRayCastingAndAdvancedShadingOfDiscreteIsosurfaces.pdf:PDF},
2262 :     owner = {gk},
2263 :     timestamp = {2008.03.28}
2264 :     }
2265 :    
2266 :     @ARTICLE{GLK:Hagmann2008a,
2267 :     author = {Patric Hagmann and Leila Cammoun and Xavier Gigandet and Reto Meuli
2268 :     and Christopher J. Honey and Van J. Wedeen and Olaf Sporns},
2269 :     title = {Mapping the Structural Core of Human Cerebral Cortex},
2270 :     journal = {PLoS Biology},
2271 :     year = {2008},
2272 :     volume = {6},
2273 :     pages = {e159},
2274 :     number = {7},
2275 :     doi = {10.1371/journal.pbio.0060159},
2276 :     file = {:Users/gk/lit/pdf/hagmann08MappingTheStructuralCoreOfHumanCerebralCortex.pdf:PDF},
2277 :     owner = {gk},
2278 :     timestamp = {2009.04.25}
2279 :     }
2280 :    
2281 :     @INPROCEEDINGS{GLK:Hagmann2008,
2282 :     author = {P. Hagmann and X. Gigandet and R. Meuli and R. K\"{o}tter and O.
2283 :     Sporns and V. J. Wedeen},
2284 :     title = {Quantitative Validation of {MR} Tractography using the {CoCoMac}
2285 :     database},
2286 :     booktitle = {Proc. ISMRM},
2287 :     year = {2008},
2288 :     pages = {427},
2289 :     file = {:Users/gk/lit/pdf/hagmannISMRM08QuantitativeValidationOfMRTractographyUsingTheCoCoMacDatabase.pdf:PDF},
2290 :     owner = {gk},
2291 :     timestamp = {2009.04.25}
2292 :     }
2293 :    
2294 :     @ARTICLE{GLK:Haralick1983,
2295 :     author = {R M Haralick},
2296 :     title = {Ridges and Valleys on Digital Images},
2297 :     journal = {Computer Vision, Graphics, and Image Processing},
2298 :     year = {1983},
2299 :     volume = {22},
2300 :     pages = {28--38},
2301 :     owner = {gk},
2302 :     timestamp = {2007.07.07}
2303 :     }
2304 :    
2305 :     @INPROCEEDINGS{GLK:Hart2002,
2306 :     author = {John C. Hart and Ed Bachta and Wojciech Jarosz and Terry Fleury},
2307 :     title = {Using Particles to Sample and Control More Complex Implicit Surfaces},
2308 :     booktitle = {Proc. Shape Modeling and Applications (SMI)},
2309 :     year = {2002},
2310 :     month = {May},
2311 :     file = {hart02UsingParticlesToSampleAndControlMoreComplexImplicitSurfaces.pdf:hart02UsingParticlesToSampleAndControlMoreComplexImplicitSurfaces.pdf:PDF},
2312 :     keywords = {particles},
2313 :     owner = {gk},
2314 :     timestamp = {2008.03.21}
2315 :     }
2316 :    
2317 :     @ARTICLE{GLK:hasan03,
2318 :     author = {K M Hasan and P A Narayana},
2319 :     title = {Computation of the Fractional Anisotropy and Mean Diffusivity Maps
2320 :     Without Tensor Decoding and Diagonalization: Theoretical Analysis
2321 :     and Validation},
2322 :     journal = MRM,
2323 :     year = {2003},
2324 :     volume = {50},
2325 :     pages = {589--598},
2326 :     owner = {gk},
2327 :     timestamp = {2007.07.30}
2328 :     }
2329 :    
2330 :     @ARTICLE{GLK:Hauser2001,
2331 :     author = {Helwig Hauser and Lukas Mroz and Gian Italo Bischi and M Edward Gr{\"o}ller},
2332 :     title = {Two-Level Volume Rendering},
2333 :     journal = TVCG,
2334 :     year = {2001},
2335 :     volume = {7},
2336 :     pages = {242--252},
2337 :     number = {3},
2338 :     month = {July--Sep},
2339 :     comment = {IEEEXplore},
2340 :     file = {hauserTVCG01TwoLevelVolumeRendering.pdf:hauserTVCG01TwoLevelVolumeRendering.pdf:PDF},
2341 :     owner = {gk},
2342 :     timestamp = {2009.01.13}
2343 :     }
2344 :    
2345 :     @INPROCEEDINGS{GLK:Hausner2001,
2346 :     author = {Alejo Hausner},
2347 :     title = {Simulating decorative mosaics},
2348 :     booktitle = {Proc. ACM SIGGRAPH},
2349 :     year = {2001},
2350 :     pages = {573--580},
2351 :     doi = {10.1145/383259.383327},
2352 :     file = {hausnerSIGGRAPH2001SimulatingDecorativeMosaics.pdf:hausnerSIGGRAPH2001SimulatingDecorativeMosaics.pdf:PDF},
2353 :     keywords = {particles},
2354 :     owner = {gk},
2355 :     timestamp = {2008.03.26}
2356 :     }
2357 :    
2358 :     @INPROCEEDINGS{GLK:Heckbert1997,
2359 :     author = {Paul Heckbert},
2360 :     title = {Fast Surface Particle Repulsion},
2361 :     booktitle = {ACM SIGGRAPH 1997 Course Notes (New Frontiers in Modeling and Texturing)},
2362 :     year = {1997},
2363 :     pages = {95--114},
2364 :     month = {August},
2365 :     file = {heckbertTR97FastSurfaceParticleRepulsion.pdf:heckbertTR97FastSurfaceParticleRepulsion.pdf:PDF},
2366 :     keywords = {particles},
2367 :     owner = {gk},
2368 :     timestamp = {2008.03.21}
2369 :     }
2370 :    
2371 :     @ARTICLE{GLK:helm06,
2372 :     author = {P A Helm and L Younes and M F Beg and D B Ennis and C Leclercq and
2373 :     O P Faris and E McVeigh and D Kass and M I Miller and R L Winslow},
2374 :     title = {Evidence of structural remodeling in the dyssynchronous failing heart},
2375 :     journal = {Circulation Research},
2376 :     year = {2006},
2377 :     volume = {98},
2378 :     pages = {125--32},
2379 :     number = {1},
2380 :     owner = {gk},
2381 :     timestamp = {2007.07.30}
2382 :     }
2383 :    
2384 :     @ARTICLE{GLK:Helton2006,
2385 :     author = {K. J. Helton and N. S. Phillips and R. B. Khan and F.A. Boop and
2386 :     R.A. Sanford and P. Zou and C.S. Li and J.W. Langston and R.J. Ogg},
2387 :     title = {Diffusion Tensor Imaging of Tract Involvement in Children with Pontine
2388 :     Tumors},
2389 :     journal = AJNR,
2390 :     year = {2006},
2391 :     volume = {27},
2392 :     pages = {786--793},
2393 :     number = {4},
2394 :     month = {April},
2395 :     file = {heltonAJNR06DiffusionTensorImagingOfTractInvolvementInChildrenWithPontineTumors.pdf:heltonAJNR06DiffusionTensorImagingOfTractInvolvementInChildrenWithPontineTumors.pdf:PDF},
2396 :     keywords = {neurosurgery},
2397 :     owner = {gk},
2398 :     timestamp = {2008.05.03}
2399 :     }
2400 :    
2401 :     @ARTICLE{GLK:Henry2003,
2402 :     author = {Roland G. Henry and Joonmi Oh and Sarah J. Nelson and Daniel Pelletier},
2403 :     title = {Directional Diffusion in Relapsing-Remitting Multiple Sclerosis:
2404 :     A Possible In Vivo Signature of {W}allerian Degeneration},
2405 :     journal = JMRI,
2406 :     year = {2003},
2407 :     volume = {18},
2408 :     pages = {420--426},
2409 :     doi = {10.1002/jmri.10379},
2410 :     file = {henryJMRI03DirectionalDiffusionInRelapsingRemittingMultipleSclorosisAPossibleInVivoSignatureOfWallerianDegeneration.pdf:henryJMRI03DirectionalDiffusionInRelapsingRemittingMultipleSclorosisAPossibleInVivoSignatureOfWallerianDegeneration.pdf:PDF},
2411 :     keywords = {vaina},
2412 :     owner = {gk},
2413 :     timestamp = {2007.09.10}
2414 :     }
2415 :    
2416 :     @ARTICLE{GLK:Hess2006,
2417 :     author = {Christopher P. Hess and Pratik Mukherjee and Eric T. Han and Duan
2418 :     Xu and Daniel B. Vigneron},
2419 :     title = {Q-Ball Reconstruction of Multimodal Fiber Orientations Using The
2420 :     Spherical Harmonic Basis},
2421 :     journal = MRM,
2422 :     year = {2006},
2423 :     volume = {56},
2424 :     pages = {104--117},
2425 :     doi = {10.1002/mrm.20931},
2426 :     file = {hessMRM06QBallReconstructionOfMultimodalFiberOrientationsUsingTheSphericalHarmonicBasis.pdf:hessMRM06QBallReconstructionOfMultimodalFiberOrientationsUsingTheSphericalHarmonicBasis.pdf:PDF},
2427 :     owner = {gk},
2428 :     timestamp = {2008.06.29}
2429 :     }
2430 :    
2431 :     @INBOOK{GLK:Hoffman,
2432 :     chapter = {3,8},
2433 :     title = {Linear Algebra},
2434 :     publisher = {Prentice-Hall, Inc.},
2435 :     year = {1971},
2436 :     author = {K Hoffman and R Kunze},
2437 :     address = {Englewood Cliffs, NJ},
2438 :     chapters = {3,8},
2439 :     owner = {gk},
2440 :     timestamp = {2007.07.30}
2441 :     }
2442 :    
2443 :     @ARTICLE{GLK:hogg2004nsa,
2444 :     author = {James C. Hogg and Fanny Chu and Soraya Utokaparch and Ryan Woods
2445 :     and W. Mark Elliott and Liliana Buzatu and Ruben M. Cherniack and
2446 :     Robert M. Rogersa and Frank C. Sciurba and Harvey O. Coxson and Peter
2447 :     D. Par{'e}},
2448 :     title = {The nature of small-airway obstruction in chronic obstructive pulmonary
2449 :     disease},
2450 :     journal = {New England Journal of Medicine},
2451 :     year = {2004},
2452 :     volume = {350},
2453 :     pages = {2645--2653},
2454 :     number = {26},
2455 :     month = {June},
2456 :     file = {:Users/gk/lit/pdf/hogg04TheNatureOfSmallAirwayObstructionInCOPD.pdf:PDF},
2457 :     owner = {gk},
2458 :     timestamp = {2009.06.29}
2459 :     }
2460 :    
2461 :     @ARTICLE{GLK:Holodny2005,
2462 :     author = {Andrei I. Holodny and Richard Watts and Valeri N. Korneinko and Igor
2463 :     N. Pronin and Mikhail E. Zhukovskiy and Devang M. Gor and Aziz Ulug},
2464 :     title = {Diffusion Tensor Tractography of the Motor White Matter Tracts in
2465 :     Man: {C}urrent Controversies and Future Directions},
2466 :     journal = ANYAS,
2467 :     year = {2005},
2468 :     volume = {1064},
2469 :     pages = {88--97},
2470 :     month = {December},
2471 :     doi = {10.1196/annals.1340.016},
2472 :     file = {holodnyANYAS05DiffusionTensorTractographyOfTheMotorWhiteMatterTractsInMan.pdf:holodnyANYAS05DiffusionTensorTractographyOfTheMotorWhiteMatterTractsInMan.pdf:PDF},
2473 :     owner = {gk},
2474 :     timestamp = {2007.09.17}
2475 :     }
2476 :    
2477 :     @BOOK{GLK:holzapfel00,
2478 :     title = {Nonlinear Solid Mechanics},
2479 :     publisher = {John Wiley and Sons, Ltd},
2480 :     year = {2000},
2481 :     author = {G A Holzapfel},
2482 :     address = {England},
2483 :     owner = {gk},
2484 :     timestamp = {2007.07.30}
2485 :     }
2486 :    
2487 :     @INPROCEEDINGS{GLK:Hsu2001,
2488 :     author = {Edward Hsu},
2489 :     title = {Generalized Line Integral Convolution Rendering of Diffusion Tensor
2490 :     Fields},
2491 :     booktitle = ISMRM,
2492 :     year = {2001},
2493 :     pages = {790},
2494 :     file = {:Users/gk/lit/pdf/hsuISMRM01GeneralizedLineIntegralConvolutionRenderingOfDTFields.pdf:PDF},
2495 :     owner = {gk},
2496 :     timestamp = {2009.09.20},
2497 :     url = {http://cds.ismrm.org/ismrm-2001/PDF3/0790.pdf}
2498 :     }
2499 :    
2500 :     @ARTICLE{GLK:hsu98,
2501 :     author = {E W Hsu and A L Muzikant and S A Matulevicius and R C Penland and
2502 :     C S Henriquez},
2503 :     title = {Magnetic resonance myocardial fiber-orientation mapping with direct
2504 :     histological correlation},
2505 :     journal = {American Journal of Physiology},
2506 :     year = {1998},
2507 :     volume = {274},
2508 :     pages = {1627--1634},
2509 :     owner = {gk},
2510 :     timestamp = {2007.07.30}
2511 :     }
2512 :    
2513 :     @INCOLLECTION{GLK:Ikits2005,
2514 :     author = {M. Ikits and J. Kniss and A. Lefohn and C. Hansen},
2515 :     title = {Chap 39: Volume Rendering Techniques},
2516 :     booktitle = {GPU Gems 2: {P}rogramming Techniques for High-Performance Graphics
2517 :     and General-Purpose Computation},
2518 :     publisher = {Addison-Wesley Professional},
2519 :     year = {2005},
2520 :     editor = {Matt Pharr},
2521 :     owner = {gk},
2522 :     timestamp = {2009.12.16}
2523 :     }
2524 :    
2525 :     @ARTICLE{GLK:Izhikevich2008,
2526 :     author = {Eugene M. Izhikevich and Gerald M. Edelman},
2527 :     title = {Large-scale model of mammalian thalamocortical systems},
2528 :     journal = PNAS,
2529 :     year = {2008},
2530 :     volume = {105},
2531 :     pages = {3593--3598},
2532 :     number = {9},
2533 :     month = {March},
2534 :     doi = {10.1073
2535 :     owner = {gk},
2536 :     review = {used my brain dataset for some aspect of building this model},
2537 :     timestamp = {2008.04.06}
2538 :     }
2539 :    
2540 :     @ARTICLE{GLK:Jalba2007,
2541 :     author = {Andrei C. Jalba and Jos B. T. M. Roerdink},
2542 :     title = {Efficient Surface Reconstruction using Generalized Coulomb Potentials},
2543 :     journal = TVCG,
2544 :     year = {2007},
2545 :     volume = {13},
2546 :     pages = {1512--1518},
2547 :     number = {6},
2548 :     file = {jalbaVIS07EfficientSurfaceReconstructionUsingGeneralizedCoulombPotentials.pdf:jalbaVIS07EfficientSurfaceReconstructionUsingGeneralizedCoulombPotentials.pdf:PDF},
2549 :     keywords = {particles},
2550 :     owner = {gk},
2551 :     timestamp = {2008.03.22}
2552 :     }
2553 :    
2554 :     @INPROCEEDINGS{GLK:Jalba2003,
2555 :     author = {A. C. Jalba and J. B. T. M. Roerdink and M. H. F: Wilkinson},
2556 :     title = {Morphological hat-transform scale spaces and their use in texture
2557 :     classification},
2558 :     booktitle = {Proc. Intl. Conference on Image Processing (ICIP)},
2559 :     year = {2003},
2560 :     volume = {1},
2561 :     pages = {329--332},
2562 :     doi = {10.1109/ICIP.2003.1246965},
2563 :     file = {jalba03MorphologicalHatTransformScaleSpacesAndTheirUseInTextureClassification.pdf:jalba03MorphologicalHatTransformScaleSpacesAndTheirUseInTextureClassification.pdf:PDF},
2564 :     owner = {gk},
2565 :     timestamp = {2008.03.22}
2566 :     }
2567 :    
2568 :     @ARTICLE{GLK:Jalba2006,
2569 :     author = {Andrei C. Jalba and Michael H. F. Wilkinson and Jos B. T. M. Roerdink},
2570 :     title = {Shape Representation and Recognition Through Morphological Curvature
2571 :     Scale Spaces},
2572 :     journal = TIP,
2573 :     year = {2006},
2574 :     volume = {15},
2575 :     pages = {331--341},
2576 :     number = {2},
2577 :     file = {jalbaTIP06ShapeRepresentationAndRecognitionThroughMorphologicalCurvatureScaleSpaces.pdf:jalbaTIP06ShapeRepresentationAndRecognitionThroughMorphologicalCurvatureScaleSpaces.pdf:PDF},
2578 :     keywords = {scale-space},
2579 :     owner = {gk},
2580 :     timestamp = {2008.03.22}
2581 :     }
2582 :    
2583 :     @ARTICLE{GLK:Jalba2004,
2584 :     author = {Andrei C Jalba and Michael H F Wilkinson and Jos B T M Roerdink},
2585 :     title = {{CPM}: {A} Deformable Model for Shape Recovery and Segmentation Based
2586 :     on Charged Particles},
2587 :     journal = PAMI,
2588 :     year = {2004},
2589 :     volume = {26},
2590 :     pages = {1320--1335},
2591 :     number = {10},
2592 :     file = {jalbaPAMI04CPMADeformableModelForShapeRecoveryAndSegmenationBasedOnChargedParticles.pdf:jalbaPAMI04CPMADeformableModelForShapeRecoveryAndSegmenationBasedOnChargedParticles.pdf:PDF},
2593 :     keywords = {particles},
2594 :     owner = {gk},
2595 :     review = {main thing I'm adding is *constraints*
2596 :    
2597 :    
2598 :     interpolates the energy and force from pixel-based charges, but doesn't
2599 :     interpolate the image itself
2600 :    
2601 :    
2602 :     does use some kind of coarse-to-find strategy to optimize finding
2603 :     edges at finest scale
2604 :    
2605 :    
2606 :     his ridge/valley stuff (fig 14) confuses ridges and valleys},
2607 :     timestamp = {2008.03.21}
2608 :     }
2609 :    
2610 :     @INPROCEEDINGS{GLK:Jiao2006,
2611 :     author = {Xiangmin Jiao},
2612 :     title = {Volume and Feature Preservation in Surface Mesh Optimization},
2613 :     booktitle = {Proc. 15th Intl. Meshing Roundtable},
2614 :     year = {2006},
2615 :     pages = {359--374},
2616 :     month = {Sept},
2617 :     publisher = {Springer-Verlag},
2618 :     file = {:Users/gk/lit/pdf/jiao06VolumeAndFeaturePreservationInSurfaceMeshOptimization.pdf:PDF},
2619 :     owner = {gk},
2620 :     timestamp = {2009.06.27}
2621 :     }
2622 :    
2623 :     @INPROCEEDINGS{GLK:Jiao2005,
2624 :     author = {X. Jiao and P. Alexander},
2625 :     title = {Parallel feature-preserving mesh smoothing},
2626 :     booktitle = {Proc. Int. Conf. Comput. Sci. Appl.},
2627 :     year = {2005},
2628 :     pages = {1180--1189},
2629 :     file = {:Users/gk/lit/pdf/jiao05ParallelFeaturePreservingMeshSmoothing.pdf:PDF},
2630 :     owner = {gk},
2631 :     timestamp = {2009.06.27}
2632 :     }
2633 :    
2634 :     @INPROCEEDINGS{GLK:Jolley2007,
2635 :     author = {Matthew Jolley and Jeroen Stinstra and David M. Weinstein and Steve
2636 :     Pieper and Ra{\'u}l San Jos{\'e} Est{\'e}par and Gordon L. Kindlmann
2637 :     and Robert S. MacLeod and Dana H. Brooks and John K. Triedman},
2638 :     title = {Open-Source Environment for Interactive Finite Element Modeling of
2639 :     Optimal {ICD} Electrode Placement},
2640 :     booktitle = {Proc. 4th Intl. Functional Imaging and Modeling of the Heart},
2641 :     year = {2007},
2642 :     series = {Lecture Notes in Computer Science 4466},
2643 :     pages = {373--382},
2644 :     address = {Salt Lake City},
2645 :     month = {June},
2646 :     doi = {10.1007/978-3-540-72907-5_38},
2647 :     file = {jolleyFIMH07OpenSourceEnvironmentForInteractiveFiniteElementModelingOfOptimalICDelectrodePlacement.pdf:jolleyFIMH07OpenSourceEnvironmentForInteractiveFiniteElementModelingOfOptimalICDelectrodePlacement.pdf:PDF},
2648 :     owner = {gk},
2649 :     timestamp = {2008.01.07}
2650 :     }
2651 :    
2652 :     @ARTICLE{GLK:jonasson05,
2653 :     author = {Lisa Jonasson and Xavier Bresson and Patric Hagmann and Olivier Cuisenaire
2654 :     and Reto Meuli and Jean-Philippe Thiran},
2655 :     title = {White matter fiber tract segmentation in {DT-MRI} using geometric
2656 :     flows},
2657 :     journal = MedIA,
2658 :     year = {2005},
2659 :     volume = {9},
2660 :     pages = {223--236},
2661 :     file = {jonassonMIA04WhiteMatterFiberTractSegmentationInDTMRIUsingGeometricFlows.pdf:jonassonMIA04WhiteMatterFiberTractSegmentationInDTMRIUsingGeometricFlows.pdf:PDF},
2662 :     owner = {gk},
2663 :     timestamp = {2007.07.30}
2664 :     }
2665 :    
2666 :     @ARTICLE{GLK:jonasson07,
2667 :     author = {Lisa Jonasson and Patric Hagmann and Claudio Pollo and Xavier Bresson
2668 :     and Cecilia Richero Wilson and Reto Meuli and Jean-Philippe Thiran},
2669 :     title = {A level set method for segmentation of the thalamus and its nuclei
2670 :     in {DT-MRI}},
2671 :     journal = {Signal Processing},
2672 :     year = {2007},
2673 :     volume = {87},
2674 :     pages = {309--321},
2675 :     file = {jonassonSP07ALevelSetMethodForSegmentationOfTheThalamusAndItsNucleiInDT-MRI.pdf:jonassonSP07ALevelSetMethodForSegmentationOfTheThalamusAndItsNucleiInDT-MRI.pdf:PDF},
2676 :     owner = {gk},
2677 :     timestamp = {2007.07.30}
2678 :     }
2679 :    
2680 :     @ARTICLE{GLK:jones04,
2681 :     author = {Derek K. Jones},
2682 :     title = {The Effect of Gradient Sampling Schemes on Measures Derived from
2683 :     Diffusion Tensor {MRI}: {A} {M}onte {C}arlo Study},
2684 :     journal = MRM,
2685 :     year = {2004},
2686 :     volume = {51},
2687 :     pages = {807--815},
2688 :     file = {jonesMRM04TheEffectOfGradientSamplingSchemesOnMeasuresDerivedFromDTMRIaMonteCarloStudy.pdf:jonesMRM04TheEffectOfGradientSamplingSchemesOnMeasuresDerivedFromDTMRIaMonteCarloStudy.pdf:PDF},
2689 :     owner = {gk},
2690 :     timestamp = {2007.07.31}
2691 :     }
2692 :    
2693 :     @ARTICLE{GLK:jones99,
2694 :     author = {D. K. Jones and M. A. Horsfield and A. Simmons},
2695 :     title = {Optimal Strategies for Measuring Diffusion in Anisotropic Systems
2696 :     by Magnetic Resonance Imaging},
2697 :     journal = MRM,
2698 :     year = {1999},
2699 :     volume = {42},
2700 :     pages = {515--525},
2701 :     file = {jonesMRM99OptimalStrategiesForMeasuringDiffusionInAnisotropicSystemsByMRI.pdf:jonesMRM99OptimalStrategiesForMeasuringDiffusionInAnisotropicSystemsByMRI.pdf:PDF},
2702 :     owner = {gk},
2703 :     timestamp = {2007.07.31}
2704 :     }
2705 :    
2706 :     @ARTICLE{GLK:jonesStroke99,
2707 :     author = {Derek K. Jones and David Lythgoe and Mark A Horsfield and Andrew
2708 :     Simmons and Steve C. R. Williams and Hugh S. Markus},
2709 :     title = {Characterization of White Matter Damage in Ischemic Leukoaraiosis
2710 :     with Diffusion Tensor {MRI}},
2711 :     journal = {Stroke},
2712 :     year = {1999},
2713 :     volume = {30},
2714 :     pages = {393--397},
2715 :     file = {jonesStroke99CharacterizationOfWhiteMatterDamageInIschemicLeukoaraiosisWithDiffusionTensorMRI.pdf:jonesStroke99CharacterizationOfWhiteMatterDamageInIschemicLeukoaraiosisWithDiffusionTensorMRI.pdf:PDF},
2716 :     owner = {gk},
2717 :     timestamp = {2007.07.30}
2718 :     }
2719 :    
2720 :     @ARTICLE{GLK:Kotter2004,
2721 :     author = {Rolf K\"{o}tter},
2722 :     title = {Online Retrieval, Processing, and Visualization of Primate Connectivity
2723 :     Data From the {CoCoMac} Database},
2724 :     journal = {Neuroinformatics},
2725 :     year = {2004},
2726 :     volume = {2},
2727 :     pages = {127--144},
2728 :     file = {:Users/gk/lit/pdf/kotter04CoCoMac.pdf:PDF},
2729 :     owner = {gk},
2730 :     timestamp = {2009.04.25}
2731 :     }
2732 :    
2733 :     @INPROCEEDINGS{GLK:Kohn2007,
2734 :     author = {Alexander K\{"o}hn and Florian Weiler and Jan Klein and Olaf Konrad
2735 :     and Horst Hahn and Heinz-Otto Peitgen},
2736 :     title = {State-of-the-Art Computer Graphics in Neurosurgical Planning and
2737 :     Risk Assessment},
2738 :     booktitle = {Proceedings Eurographics 2007 Short Papers},
2739 :     year = {2007},
2740 :     pages = {117--120},
2741 :     file = {kohnEG07StateOfTheArtComputerGraphicsInNeurosurgicalPlanningAndRiskAssessment.pdf:kohnEG07StateOfTheArtComputerGraphicsInNeurosurgicalPlanningAndRiskAssessment.pdf:PDF},
2742 :     owner = {gk},
2743 :     timestamp = {2008.01.21}
2744 :     }
2745 :    
2746 :     @INPROCEEDINGS{GLK:Kalra1989,
2747 :     author = {D Kalra and A H Barr},
2748 :     title = {Guaranteed ray intersections with implicit surfaces},
2749 :     booktitle = SIGGRAPH # { 1989},
2750 :     year = {1989},
2751 :     pages = {297--306},
2752 :     doi = {10.1145/74333.74364},
2753 :     file = {kalraSIGGRAPH89GuaranteedRayIntersectionsWithImplicitSurfaces.pdf.pdf:kalraSIGGRAPH89GuaranteedRayIntersectionsWithImplicitSurfaces.pdf.pdf:PDF},
2754 :     owner = {gk},
2755 :     timestamp = {2007.07.09}
2756 :     }
2757 :    
2758 :     @ARTICLE{GLK:Kamada2005,
2759 :     author = {Kyousuke Kamada and Yutaka Sawamura and Fumiya Takeuchi and Hideaki
2760 :     Kawaguchi and Shinya Kuriki and Tomoki Todo and Akio Morita and Yoshitaka
2761 :     Masutani and Shigeki Aoki and Takaaki Kirino},
2762 :     title = {Functional Identification Of The Primary Motor Area By Corticospinal
2763 :     Tractography},
2764 :     journal = {Neurosurgery},
2765 :     year = {2005},
2766 :     volume = {56},
2767 :     pages = {98--109},
2768 :     number = {1},
2769 :     month = {Jan},
2770 :     comment = {Operative Neurosurgery Supplement 1},
2771 :     doi = {DOI:10.1227/01.NEU.0000144311.88383.EF},
2772 :     file = {kamada05FunctionalIdentificationOfThePrimaryMoterAreaByCorticospinalTractography.pdf:kamada05FunctionalIdentificationOfThePrimaryMoterAreaByCorticospinalTractography.pdf:PDF},
2773 :     keywords = {neurosurgery tumor},
2774 :     owner = {gk},
2775 :     timestamp = {2008.11.12}
2776 :     }
2777 :    
2778 :     @ARTICLE{GLK:Kanaan2005,
2779 :     author = {R A A Kanaan and J-S Kim and W E Kaufmann and G D Pearlson and G
2780 :     J Barker and P K McGuire},
2781 :     title = {Diffusion Tensor Imaging In Schizophrenia},
2782 :     journal = {Biological Psychiatry},
2783 :     year = {2005},
2784 :     volume = {58},
2785 :     pages = {921--929},
2786 :     month = {December},
2787 :     day = {15},
2788 :     file = {kanaan05DiffusionTensorImagingInSchizophrenia.pdf:kanaan05DiffusionTensorImagingInSchizophrenia.pdf:PDF},
2789 :     issue = {12},
2790 :     owner = {gk},
2791 :     timestamp = {2007.07.09}
2792 :     }
2793 :    
2794 :     @ARTICLE{GLK:Karkanis2001,
2795 :     author = {Tasso Karkanis and A. James Stewart},
2796 :     title = {Curvature-Dependent Triangulation of Implicit Surfaces},
2797 :     journal = CGnA,
2798 :     year = {2001},
2799 :     volume = {21},
2800 :     pages = {60--69},
2801 :     number = {2},
2802 :     file = {karkanisCGA01CurvatureDependentTriangulationOfImplicitSurfaces.pdf:karkanisCGA01CurvatureDependentTriangulationOfImplicitSurfaces.pdf:PDF},
2803 :     owner = {gk},
2804 :     timestamp = {2008.03.26}
2805 :     }
2806 :    
2807 :     @ARTICLE{GLK:Kass1988,
2808 :     author = {Michael Kass and Andrew Witkin and Demetri Terzopoulos},
2809 :     title = {Snakes: {A}ctive Contour Model},
2810 :     journal = IJCV,
2811 :     year = {1988},
2812 :     volume = {1},
2813 :     pages = {321--331},
2814 :     number = {4},
2815 :     month = {January},
2816 :     doi = {10.1007/BF00133570},
2817 :     file = {kass88SnakesActiveContourModels.pdf:kass88SnakesActiveContourModels.pdf:PDF},
2818 :     keywords = {contours, scale-space},
2819 :     owner = {gk},
2820 :     review = {kind of amazing that Kass hasn't already done SSP
2821 :    
2822 :    
2823 :     have to read Gauch & Pizer
2824 :    
2825 :    
2826 :     uses E^*_{snake} as notation for total snake energy},
2827 :     timestamp = {2008.03.22}
2828 :     }
2829 :    
2830 :     @ARTICLE{GLK:Kelly2001,
2831 :     author = {P.J. Kelly and E.T. Hedley-Whyte and J. Primavera and J. He and R.G.
2832 :     Gonzalez},
2833 :     title = {Diffusion {MRI} in ischemic stroke compared to pathologically verified
2834 :     infarction},
2835 :     journal = {Neurology},
2836 :     year = {2001},
2837 :     volume = {56},
2838 :     pages = {914--920},
2839 :     number = {7},
2840 :     file = {kellyNeurology01DiffusionMRIInIschemicStrokeComparedToPathologicallyVerifiedInfarction.pdf:kellyNeurology01DiffusionMRIInIschemicStrokeComparedToPathologicallyVerifiedInfarction.pdf:PDF},
2841 :     keywords = {vaina},
2842 :     owner = {gk},
2843 :     timestamp = {2007.09.10}
2844 :     }
2845 :    
2846 :     @ARTICLE{GLK:Keys1981,
2847 :     author = {R. Keys},
2848 :     title = {Cubic convolution interpolation for digital image processing},
2849 :     journal = {IEEE Trans. Acoustics, Speech and Signal Processing},
2850 :     year = {1981},
2851 :     volume = {29},
2852 :     pages = {1153--1160},
2853 :     number = {6},
2854 :     month = {Dec},
2855 :     owner = {gk},
2856 :     timestamp = {2009.12.16}
2857 :     }
2858 :    
2859 :     @ARTICLE{GLK:Kim2005,
2860 :     author = {Dae-Shik Kim and Mina Kim},
2861 :     title = {Combining Functional and Diffusion Tensor {MRI}},
2862 :     journal = ANYAS,
2863 :     year = {2005},
2864 :     volume = {1064},
2865 :     pages = {1--15},
2866 :     doi = {10.1196/annals.1340.005},
2867 :     file = {kimANYAS05CombiningFunctionalAndDiffusionTensorMRI.pdf:kimANYAS05CombiningFunctionalAndDiffusionTensorMRI.pdf:PDF},
2868 :     keywords = {vaina},
2869 :     owner = {gk},
2870 :     timestamp = {2007.09.17}
2871 :     }
2872 :    
2873 :     @ARTICLE{GLK:Kim2007,
2874 :     author = {Se Hyung Kim and Jeong Min Lee and Joon-Goo Lee and Jong Hyo Kim
2875 :     and Philippe A. Lefere and Joon Koo Han and Byung Ihn Choi},
2876 :     title = {Computer-Aided Detection of Colonic Polyps at CT Colonography Using
2877 :     a Hessian Matrix-Based Algorithm: {P}reliminary Study},
2878 :     journal = {American Journal of Roentgenology},
2879 :     year = {2007},
2880 :     volume = {189},
2881 :     pages = {41--51},
2882 :     month = {July},
2883 :     doi = {DOI:10.2214/AJR.07.2072},
2884 :     file = {kim07ComputerAidedDetectionOfColonicPolypsAtCTColonographyUsingAHessianMatrixBasedAlgorithm_.pdf:kim07ComputerAidedDetectionOfColonicPolypsAtCTColonographyUsingAHessianMatrixBasedAlgorithm_.pdf:PDF},
2885 :     keywords = {colon, curvature},
2886 :     owner = {gk},
2887 :     timestamp = {2008.04.24}
2888 :     }
2889 :    
2890 :     @MISC{GLK:Teem,
2891 :     author = {G Kindlmann},
2892 :     title = {Teem: Tools to process and visualize scientific data and images},
2893 :     howpublished = {http://teem.sf.net},
2894 :     owner = {gk},
2895 :     timestamp = {2007.11.20},
2896 :     url = {http://teem.sf.net}
2897 :     }
2898 :    
2899 :     @INPROCEEDINGS{GLK:superquad04,
2900 :     author = {Gordon Kindlmann},
2901 :     title = {Superquadric Tensor Glyphs},
2902 :     booktitle = {Proc. IEEE TVCG/EG Symposium on Visualization},
2903 :     year = {2004},
2904 :     pages = {147--154},
2905 :     month = {May},
2906 :     file = {kindlmannVissym04SuperquadricTensorGlyphs.pdf:kindlmannVissym04SuperquadricTensorGlyphs.pdf:PDF},
2907 :     owner = {gk},
2908 :     timestamp = {2007.07.30}
2909 :     }
2910 :    
2911 :     @INPROCEEDINGS{GLK:Kindlmann1998,
2912 :     author = {G Kindlmann and JW Durkin},
2913 :     title = {Semi-Automatic Generation of Transfer Functions for Direct Volume
2914 :     Rendering},
2915 :     booktitle = {IEEE Symposium On Volume Visualization},
2916 :     year = {1998},
2917 :     pages = {79--86},
2918 :     month = {October},
2919 :     owner = {gk},
2920 :     timestamp = {2007.12.11},
2921 :     url = {http://www.cs.utah.edu/~gk/papers/vis98}
2922 :     }
2923 :    
2924 :     @ARTICLE{GLK:Kindlmann2007a,
2925 :     author = {Gordon Kindlmann and Daniel B. Ennis and Ross T. Whitaker and Carl-Fredrik
2926 :     Westin},
2927 :     title = {Diffusion Tensor Analysis with Invariant Gradients and Rotation Tangents},
2928 :     journal = TMI,
2929 :     year = {2007},
2930 :     volume = {26},
2931 :     pages = {1483--1499},
2932 :     number = {11},
2933 :     month = {November},
2934 :     doi = {10.1109/TMI.2007.907277},
2935 :     file = {kindlmannTMI07DiffusionTensorAnalysisWithIGRT.pdf:kindlmannTMI07DiffusionTensorAnalysisWithIGRT.pdf:PDF},
2936 :     owner = {gk},
2937 :     timestamp = {2007.09.17}
2938 :     }
2939 :    
2940 :     @INPROCEEDINGS{GLK:Kindlmann2007b,
2941 :     author = {G Kindlmann and RSJ Est{\'e}par and M Niethammer and S Haker and
2942 :     C-F Westin},
2943 :     title = {Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference
2944 :     Measurement},
2945 :     booktitle = MICCAI # { 2007},
2946 :     year = {2007},
2947 :     series = {Lecture Notes in Computer Science 4792},
2948 :     pages = {1--9},
2949 :     address = {Brisbane, Australia},
2950 :     month = {October--November},
2951 :     file = {kindlmannMICCAI07GeodesicLoxodromes.pdf:kindlmannMICCAI07GeodesicLoxodromes.pdf:PDF},
2952 :     owner = {gk},
2953 :     timestamp = {2007.11.20}
2954 :     }
2955 :    
2956 :     @INPROCEEDINGS{GLK:Kindlmann2008,
2957 :     author = {Gordon Kindlmann and Ra{\'u}l San Jos{\'e} Est{\'e}par and Carl-Fredrik
2958 :     Westin},
2959 :     title = {Scale-Space Particles for Extracting Crease Features: {I}nitial Development
2960 :     and Visualization in Lung {CT}},
2961 :     booktitle = {Proceedings IEEE International Symposium on Biomedical Imaging (ISBI
2962 :     2008)},
2963 :     year = {2008},
2964 :     note = {(submitted)},
2965 :     owner = {gk},
2966 :     timestamp = {2007.12.23}
2967 :     }
2968 :    
2969 :     @ARTICLE{GLK:Kindlmann2007,
2970 :     author = {Gordon Kindlmann and Xavier Tricoche and Carl-Fredrik Westin},
2971 :     title = {Delineating white matter structure in diffusion tensor {MRI} with
2972 :     anisotropy creases},
2973 :     journal = MedIA,
2974 :     year = {2007},
2975 :     volume = {11},
2976 :     pages = {492--502},
2977 :     number = {5},
2978 :     month = {October},
2979 :     doi = {doi:10.1016/j.media.2007.07.005},
2980 :     file = {kindlmannMIA07DelineatingWhiteMatterStructureInDiffusionTensorMRIWithAnisotropyCreases.pdf:kindlmannMIA07DelineatingWhiteMatterStructureInDiffusionTensorMRIWithAnisotropyCreases.pdf:PDF},
2981 :     keywords = {ridges},
2982 :     owner = {gk},
2983 :     timestamp = {2007.09.17}
2984 :     }
2985 :    
2986 :     @INPROCEEDINGS{GLK:Kindlmann2006,
2987 :     author = {G Kindlmann and X Tricoche and C-F Westin},
2988 :     title = {Anisotropy Creases Delineate White Matter Structure in Diffusion
2989 :     Tensor {MRI}},
2990 :     booktitle = MICCAI # { 2006},
2991 :     year = {2006},
2992 :     series = {Lecture Notes in Computer Science 4190},
2993 :     pages = {126--133},
2994 :     address = {Copenhagen, Denmark},
2995 :     month = {October},
2996 :     file = {kindlmannMiccai06AnisoCreases.pdf:kindlmannMiccai06AnisoCreases.pdf:PDF},
2997 :     keywords = {ridges},
2998 :     owner = {gk},
2999 :     timestamp = {2007.07.09}
3000 :     }
3001 :    
3002 :     @INPROCEEDINGS{GLK:Kindlmann1999,
3003 :     author = {Gordon Kindlmann and David Weinstein},
3004 :     title = {Hue-Balls and Lit-Tensors for Direct Volume Rendering of Diffusion
3005 :     Tensor Fields},
3006 :     booktitle = VIS # { 1999},
3007 :     year = {1999},
3008 :     pages = {183--189},
3009 :     month = {October},
3010 :     owner = {gk},
3011 :     timestamp = {2008.01.04}
3012 :     }
3013 :    
3014 :     @ARTICLE{GLK:Kindlmann2000,
3015 :     author = {Gordon Kindlmann and David Weinstein and David Hart},
3016 :     title = {Strategies for Direct Volume Rendering of Diffusion Tensor Fields},
3017 :     journal = TVCG,
3018 :     year = {2000},
3019 :     volume = {6},
3020 :     pages = {124--138},
3021 :     number = {2},
3022 :     month = {April--June},
3023 :     doi = {10.1109/2945.856994},
3024 :     file = {kindlmannTVCG00StrategiesForDVRofDT.pdf:kindlmannTVCG00StrategiesForDVRofDT.pdf:PDF},
3025 :     owner = {gk},
3026 :     timestamp = {2007.10.22}
3027 :     }
3028 :    
3029 :     @ARTICLE{GLK:Kindlmann2005,
3030 :     author = {G Kindlmann and DM Weinstein and GM Jones and CR Johnson and MR Capecchi
3031 :     and C Keller},
3032 :     title = {Practical vessel imaging by computed tomography in live transgenic
3033 :     mouse models for human tumors},
3034 :     journal = {Molecular Imaging},
3035 :     year = {2005},
3036 :     volume = {4},
3037 :     pages = {417--424},
3038 :     number = {4},
3039 :     file = {kindlmann05PracticalVesselImagingByComputedTomographyInLiveTransgenicMouseModelsForHumanTumors.pdf:kindlmann05PracticalVesselImagingByComputedTomographyInLiveTransgenicMouseModelsForHumanTumors.pdf:PDF},
3040 :     owner = {gk},
3041 :     timestamp = {2007.12.11}
3042 :     }
3043 :    
3044 :     @ARTICLE{GLK:Kindlmann2006a,
3045 :     author = {G Kindlmann and C-F Westin},
3046 :     title = {Diffusion Tensor Visualization with Glyph Packing},
3047 :     journal = TVCG,
3048 :     year = {2006},
3049 :     volume = {12},
3050 :     pages = {1329--1335},
3051 :     number = {5},
3052 :     month = {September-October},
3053 :     comment = {Proceedings Visualization / Information Visualization 2006},
3054 :     file = {kindlmannTVCG06GlyphPacking.pdf:kindlmannTVCG06GlyphPacking.pdf:PDF},
3055 :     owner = {gk},
3056 :     timestamp = {2007.11.20}
3057 :     }
3058 :    
3059 :     @INPROCEEDINGS{GLK:Kindlmann2003,
3060 :     author = {G Kindlmann and R Whitaker and T Tasdizen and T M\"{o}ller},
3061 :     title = {Curvature-Based Transfer Functions for Direct Volume Rendering: {M}ethods
3062 :     and Applications},
3063 :     booktitle = VIS # { 2003},
3064 :     year = {2003},
3065 :     pages = {513--520},
3066 :     month = {October},
3067 :     file = {kindlmannVis03CurvatureBasedTransferFunctions_.pdf:kindlmannVis03CurvatureBasedTransferFunctions_.pdf:PDF},
3068 :     owner = {gk},
3069 :     timestamp = {2007.12.11}
3070 :     }
3071 :    
3072 :     @PHDTHESIS{GLK:phd04,
3073 :     author = {Gordon L Kindlmann},
3074 :     title = {Visualization and Analysis of Diffusion Tensor Fields},
3075 :     school = {University of Utah},
3076 :     year = {2004},
3077 :     month = {September},
3078 :     note = {\url{http://www.cs.utah.edu/~gk/PhD}},
3079 :     comment = {\url{http://www.cs.utah.edu/research/techreports/2004/UUCS-04-014.pdf}},
3080 :     file = {kindlmannPHD04.pdf:kindlmannPHD04.pdf:PDF},
3081 :     owner = {gk},
3082 :     timestamp = {2007.07.30},
3083 :     url = {http://www.cs.utah.edu/~gk/PhD/}
3084 :     }
3085 :    
3086 :     @ARTICLE{GLK:Kindlmann2009,
3087 :     author = {Gordon L. Kindlmann and Ra{\'u}l San Jos{\'e} Est{\'e}par and Stephen
3088 :     M. Smith and Carl-Fredrik Westin},
3089 :     title = {Sampling and Visualizing Creases with Scale-Space Particles},
3090 :     journal = TVCG,
3091 :     year = {2009},
3092 :     volume = {15},
3093 :     pages = {1415--1424},
3094 :     number = {6},
3095 :     address = {Los Alamitos, CA, USA},
3096 :     doi = {10.1109/TVCG.2009.177},
3097 :     issn = {1077-2626},
3098 :     owner = {gk},
3099 :     publisher = {IEEE Computer Society},
3100 :     timestamp = {2009.10.26}
3101 :     }
3102 :    
3103 :     @ARTICLE{GLK:Kinoshita2008,
3104 :     author = {Manabu Kinoshita and Naoya Hashimoto and Tetsu Goto and Naoki Kagawa
3105 :     and Haruhiko Kishima and Shuichi Izumoto and Hisashi Tanaka and Norihiko
3106 :     Fujita and Toshiki Yoshiminea},
3107 :     title = {Fractional anisotropy and tumor cell density of the tumor core show
3108 :     positive correlation in diffusion tensor magnetic resonance imaging
3109 :     of malignant brain tumors},
3110 :     journal = NI,
3111 :     year = {2008},
3112 :     volume = {43},
3113 :     pages = {29--35},
3114 :     number = {1},
3115 :     month = {Oct},
3116 :     doi = {doi:10.1016/j.neuroimage.2008.06.041},
3117 :     file = {kinoshitaNI08FractionalAnisotropyAndTumorCellDensityOfTheTumorCoreShowPositiveCorrelationInDTMRIOfMalignantBrainTumors.pdf:kinoshitaNI08FractionalAnisotropyAndTumorCellDensityOfTheTumorCoreShowPositiveCorrelationInDTMRIOfMalignantBrainTumors.pdf:PDF},
3118 :     keywords = {tumor neurosurgery},
3119 :     owner = {gk},
3120 :     timestamp = {2008.11.12}
3121 :     }
3122 :    
3123 :     @ARTICLE{GLK:Kinoshita2005,
3124 :     author = {Manabu Kinoshita and Kei Yamada and Naoya Hashimoto and Amami Kato
3125 :     and Shuichi Izumoto and Takahito Baba, and Motohiko Maruno and Tsunehiko
3126 :     Nishimura and Toshiki Yoshiminea},
3127 :     title = {Fiber-tracking does not accurately estimate size of fiber bundle
3128 :     in pathological condition: initial neurosurgical experience using
3129 :     neuronavigation and subcortical white matter stimulation},
3130 :     journal = NI,
3131 :     year = {2005},
3132 :     volume = {25},
3133 :     pages = {424-429},
3134 :     number = {1},
3135 :     month = {April},
3136 :     doi = {10.1016/j.neuroimage.2004.07.076},
3137 :     file = {kinoshitaNeuroImage05FiberTrackingDoesNotAccuratelyEstimateSizeOfFiberBundleInPathologicalCondition_.pdf:kinoshitaNeuroImage05FiberTrackingDoesNotAccuratelyEstimateSizeOfFiberBundleInPathologicalCondition_.pdf:PDF},
3138 :     keywords = {tumor qazi},
3139 :     owner = {gk},
3140 :     timestamp = {2007.09.19}
3141 :     }
3142 :    
3143 :     @INPROCEEDINGS{GLK:Klein2005,
3144 :     author = {Thomas Klein and Thomas Ertl},
3145 :     title = {Scale-Space Tracking of Critical Points in {3D} Vector Fields},
3146 :     booktitle = {Proc. Workshop on Topology-Based Methods in Visualization},
3147 :     year = {2005},
3148 :     pages = {35--49},
3149 :     file = {klein05ScaleSpaceTrackingOfCriticalPointsIn3DVectorFields.pdf:klein05ScaleSpaceTrackingOfCriticalPointsIn3DVectorFields.pdf:PDF},
3150 :     keywords = {scale-space},
3151 :     owner = {gk},
3152 :     review = {considers scale-space behavior of critical points in vector fields:
3153 :     points where the vector field is zero
3154 :    
3155 :    
3156 :     that definition of critical point leads to compact formulations of
3157 :     the scale-space trajectories of critical points according to either
3158 :     a feature flow field, or the implicit function theorem.
3159 :    
3160 :    
3161 :     starts by finding all critical points at the finest scale
3162 :    
3163 :    
3164 :     On scale-interpolation: does either a lot of discrete samples, or
3165 :     only needs two at-a-time to do the forward integration up through
3166 :     scale
3167 :    
3168 :    
3169 :     claim to exploit the transform of derivative along scale into laplacian
3170 :     in space
3171 :    
3172 :    
3173 :     had problems with numerical accuracy of their derivatives, had to
3174 :     use a predictor/corrector thing to re-find the critical point at
3175 :     each new scale.
3176 :    
3177 :    
3178 :     apparently handle "bifurcations", but I didn't understand that part
3179 :    
3180 :    
3181 :     basic visualization results were to find the critical points that
3182 :     lasted the longest in scale-space},
3183 :     timestamp = {2008.03.23}
3184 :     }
3185 :    
3186 :     @ARTICLE{GLK:Klingberg2000,
3187 :     author = {T Klingberg and M Hedehus and E Temple and T Salz and J D E Gabrielli
3188 :     and M E Moseley and R A Poldrack},
3189 :     title = {Microstructure of Temporo-Parietal White Matter as a Basis for Reading
3190 :     Ability: {E}vidence from Diffusion Tensor Magnetic Resonance Imaging},
3191 :     journal = {Neuron},
3192 :     year = {2000},
3193 :     volume = {25},
3194 :     pages = {493--500},
3195 :     file = {klingbergNeuron00MicrostructureOfTemporoParietalWhiteMatterAsABasisForReadingAbilityEvidenceFromDiffusionTensorMagneticResonanceImaging.pdf:klingbergNeuron00MicrostructureOfTemporoParietalWhiteMatterAsABasisForReadingAbilityEvidenceFromDiffusionTensorMagneticResonanceImaging.pdf:PDF},
3196 :     issue = {2},
3197 :     owner = {gk},
3198 :     timestamp = {2007.07.09}
3199 :     }
3200 :    
3201 :     @ARTICLE{GLK:Kniss2002,
3202 :     author = {J Kniss and G Kindlmann and C Hansen},
3203 :     title = {Multidimensional Transfer Functions for Interactive Volume Rendering},
3204 :     journal = TVCG,
3205 :     year = {2002},
3206 :     volume = {8},
3207 :     pages = {270--285},
3208 :     number = {3},
3209 :     month = {July--September},
3210 :     owner = {gk},
3211 :     timestamp = {2007.12.11}
3212 :     }
3213 :    
3214 :     @INPROCEEDINGS{GLK:Kniss2001,
3215 :     author = {J Kniss and G Kindlmann and C Hansen},
3216 :     title = {Interactive Volume Rendering Using Multi-Dimensional Transfer Functions
3217 :     and Direct Manipulation Widgets},
3218 :     booktitle = VIS # { 2001},
3219 :     year = {2001},
3220 :     month = {October},
3221 :     owner = {gk},
3222 :     timestamp = {2007.12.11},
3223 :     url = {http://www.cs.utah.edu/~jmk/papers/vis01}
3224 :     }
3225 :    
3226 :     @INPROCEEDINGS{GLK:knutsson87,
3227 :     author = {Hans Knutsson},
3228 :     title = {A Tensor Representation of 3-{D} Structures},
3229 :     booktitle = {5th IEEE-ASSP and EURASIP Workshop on Multidimensional Signal Processing},
3230 :     year = {1987},
3231 :     address = {Noordwijkerhout, Netherlands},
3232 :     month = {September},
3233 :     owner = {gk},
3234 :     timestamp = {2007.07.30}
3235 :     }
3236 :    
3237 :     @INPROCEEDINGS{GLK:koay06,
3238 :     author = {C Koay and L-C Chang and C Pierpaoli and P J Basser},
3239 :     title = {Error Propagation Framework for Diffusion Tensor Imaging},
3240 :     booktitle = ISMRM # { 2006},
3241 :     year = {2006},
3242 :     pages = {1067},
3243 :     file = {koayISMRM06ErrorPropagationFrameworkForDiffusionTensorImaging.pdf:koayISMRM06ErrorPropagationFrameworkForDiffusionTensorImaging.pdf:PDF},
3244 :     owner = {gk},
3245 :     timestamp = {2007.07.31}
3246 :     }
3247 :    
3248 :     @ARTICLE{GLK:koayMRM06,
3249 :     author = {Cheng Guan Koay and John D. Carew and Andrew L. Alexander and Peter
3250 :     J. Basser and
3251 :    
3252 :     M. Elizabeth Meyerand},
3253 :     title = {Investigation of Anomalous Estimates of Tensor-Derived Quantities
3254 :     in Diffusion Tensor Imaging},
3255 :     journal = MRM,
3256 :     year = {2006},
3257 :     volume = {55},
3258 :     pages = {930--936},
3259 :     file = {koayMRM06InvestigationOfAnomalousEstimatesOfTensorDerivedQuantitiesInDiffusionTensorImaging.pdf:koayMRM06InvestigationOfAnomalousEstimatesOfTensorDerivedQuantitiesInDiffusionTensorImaging.pdf:PDF},
3260 :     owner = {gk},
3261 :     timestamp = {2007.08.02}
3262 :     }
3263 :    
3264 :     @ARTICLE{GLK:Koay2006,
3265 :     author = {Cheng Guan Koay and Lin-Ching Chang and John D. Carew and Carlo Pierpaoli
3266 :     and Peter J. Basser},
3267 :     title = {A unifying theoretical and algorithmic framework for least squares
3268 :     methods of estimation in diffusion tensor imaging},
3269 :     journal = JMR,
3270 :     year = {2006},
3271 :     volume = {182},
3272 :     pages = {115--125},
3273 :     number = {1},
3274 :     file = {koayJMR06AUnifyingTheoreticalAndAlgorithmicFrameworkForLeastSquaresMethodsOfEstimationInDiffusionTensorImaging.pdf:koayJMR06AUnifyingTheoreticalAndAlgorithmicFrameworkForLeastSquaresMethodsOfEstimationInDiffusionTensorImaging.pdf:PDF},
3275 :     owner = {gk},
3276 :     timestamp = {2007.08.02}
3277 :     }
3278 :    
3279 :     @INPROCEEDINGS{GLK:Koenderink1993,
3280 :     author = {J J Koenderink and A J van~Doorn},
3281 :     title = {Local features of smooth shapes: {R}idges and courses},
3282 :     booktitle = {Proc. SPIE, Geometric Methods in Computer Vision II},
3283 :     year = {1993},
3284 :     editor = {BC Vemuri},
3285 :     volume = {2031},
3286 :     pages = {2--13},
3287 :     month = jun,
3288 :     adsnote = {Provided by the Smithsonian/NASA Astrophysics Data System},
3289 :     adsurl = {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1993SPIE.2031....2K&db_key=PHY},
3290 :     file = {Koendrink-doorn-SPIE-GMCV-1993.pdf:Koendrink-doorn-SPIE-GMCV-1993.pdf:PDF},
3291 :     owner = {gk},
3292 :     review = {learned from GLK:Peikert2008 that they give an example of where they
3293 :     think height ridges fail, the "curved gutter"},
3294 :     timestamp = {2007.07.06},
3295 :     url = {http://spiedl.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PSISDG002031000001000002000001&idtype=cvips&gifs=yes}
3296 :     }
3297 :    
3298 :     @ARTICLE{GLK:Koenderink1994,
3299 :     author = {Jan J Koenderink and Andrea J van Doorn},
3300 :     title = {Two-plus-one-dimensional differential geometry},
3301 :     journal = {Pattern Recognition Letters},
3302 :     year = {1994},
3303 :     volume = {15},
3304 :     pages = {439--443},
3305 :     month = {May},
3306 :     file = {koenderinkPRL94TwoPlusOneDimensionalDifferentialGeometry.pdf:koenderinkPRL94TwoPlusOneDimensionalDifferentialGeometry.pdf:PDF},
3307 :     keywords = {ridges},
3308 :     owner = {gk},
3309 :     review = {available from:
3310 :    
3311 :    
3312 :     http://www.lems.brown.edu/vision/courses/computer-vision/papers/segmentation/surface%20networks/
3313 :    
3314 :    
3315 :     basically mocks Eberly's "ridge finders" because they will never be
3316 :     able to "really" describe the way that water flows downhill. whoa.},
3317 :     timestamp = {2008.04.05}
3318 :     }
3319 :    
3320 :     @ARTICLE{GLK:Kruger2005,
3321 :     author = {Jens Kr{\"u}ger and Peter Kipfer and Polina Kondratieva and R{\"u}diger
3322 :     Westermann},
3323 :     title = {A Particle System for Interactive Visualization of {3D} Flows},
3324 :     journal = TVCG,
3325 :     year = {2005},
3326 :     volume = {11},
3327 :     pages = {744--756},
3328 :     number = {6},
3329 :     file = {kruegerTVCG05AParticleSystemForInteractiveVisualizationOf3DFlows.pdf:kruegerTVCG05AParticleSystemForInteractiveVisualizationOf3DFlows.pdf:PDF},
3330 :     owner = {gk},
3331 :     timestamp = {2008.01.21}
3332 :     }
3333 :    
3334 :     @ARTICLE{GLK:Kubicki2007,
3335 :     author = {Marek Kubicki and Robert McCarley and Carl-Fredrik Westin and Hae-Jeong
3336 :     Park and Stephan Maier and Ron Kikinis and Ferenc A. Jolesz and Martha
3337 :     E. Shenton},
3338 :     title = {A review of diffusion tensor imaging studies in schizophrenia},
3339 :     journal = {Journal of Psychiatric Research},
3340 :     year = {2007},
3341 :     volume = {41},
3342 :     pages = {15--30},
3343 :     doi = {10.1016/j.jpsychires.2005.05.005},
3344 :     file = {:Users/gk/lit/pdf/kubicki07AReviewOfDiffusionTensorImagingStudiesInSchizophrenia.pdf:PDF},
3345 :     owner = {gk},
3346 :     timestamp = {2009.06.28}
3347 :     }
3348 :    
3349 :     @ARTICLE{GLK:Kubicki2003,
3350 :     author = {M Kubicki and C-F Westin and S E Maier and H Mamata and M Frumin
3351 :     and H Ernst-Hirshefeld and R Kikinis and F A Jolesz and R W McCarley
3352 :     and M E Shenton},
3353 :     title = {Cingulate Fasciculus Integrity Disruption in Schizophrenia: {A} Magnetic
3354 :     Resonance Diffusion Tensor Imaging Study},
3355 :     journal = {Biological Psychiatry},
3356 :     year = {2003},
3357 :     volume = {54},
3358 :     pages = {1171--1180},
3359 :     doi = {doi:10.1016/S0006-3223(03)00419-0},
3360 :     file = {kubicki03CingulateFasciculusIntegrityDisruptionInSchizophreniaAMagneticResonanceDiffusionTensorImagingStudy.pdf:kubicki03CingulateFasciculusIntegrityDisruptionInSchizophreniaAMagneticResonanceDiffusionTensorImagingStudy.pdf:PDF},
3361 :     owner = {gk},
3362 :     timestamp = {2007.07.06}
3363 :     }
3364 :    
3365 :     @ARTICLE{GLK:Kubicki2002,
3366 :     author = {M. Kubicki and C.-F. Westin and S. E. Maier and H. Mamata and M.
3367 :     Frumin and H. Ernst-Hirshefeld and R. Kikinis and F. A. Jolesz and
3368 :     R. W. McCarley and M. E. Shenton},
3369 :     title = {Diffusion Tensor Imaging And Its Application To Neuropsychiatric
3370 :     Disorders},
3371 :     journal = {Harvard Rev of Psychiatry},
3372 :     year = {2002},
3373 :     volume = {10},
3374 :     pages = {234--336},
3375 :     file = {:Users/gk/lit/pdf/kubicki02DTIandItsApplicationToNeuropsychiatricDisorders.pdf:PDF},
3376 :     owner = {gk},
3377 :     timestamp = {2009.04.21}
3378 :     }
3379 :    
3380 :     @ARTICLE{GLK:Kuijper2004,
3381 :     author = {Arjan Kuijper},
3382 :     title = {On detecting all saddle points in {2D} images},
3383 :     journal = {Pattern Recognition Letters},
3384 :     year = {2004},
3385 :     volume = {25},
3386 :     pages = {1665--1672},
3387 :     number = {15},
3388 :     file = {kuijper04OnDetectingAllSaddlePointsIn2DImages.pdf:kuijper04OnDetectingAllSaddlePointsIn2DImages.pdf:PDF},
3389 :     owner = {gk},
3390 :     timestamp = {2008.04.05}
3391 :     }
3392 :    
3393 :     @PHDTHESIS{GLK:Kuijper2002,
3394 :     author = {Arjan Kuijper},
3395 :     title = {The deep structure of {G}aussian scale space images},
3396 :     school = {Universiteit Utrecht},
3397 :     year = {2002},
3398 :     file = {kuijperPHD02DeepStructureOfGaussianScaleSpaceImages.pdf:kuijperPHD02DeepStructureOfGaussianScaleSpaceImages.pdf:PDF},
3399 :     owner = {gk},
3400 :     timestamp = {2008.04.05},
3401 :     url = {http://igitur-archive.library.uu.nl/dissertations/2002-0904-155155/inhoud.htm}
3402 :     }
3403 :    
3404 :     @INPROCEEDINGS{GLK:Kuijper1999,
3405 :     author = {Arjan Kuijper and Luc Florack},
3406 :     title = {Calculations on Critical Points under {G}aussian Blurring},
3407 :     booktitle = {Proc. 2nd Intl. Conf. Scale-Space Theories in Computer Vision},
3408 :     year = {1999},
3409 :     volume = {1682},
3410 :     series = {Lecture Notes In Computer Science},
3411 :     pages = {318--329},
3412 :     doi = {10.1007/3-540-48236-9_28},
3413 :     file = {kuijper99CalculationsOnCriticalPointsUnderGaussianBlurring.pdf:kuijper99CalculationsOnCriticalPointsUnderGaussianBlurring.pdf:PDF},
3414 :     keywords = {scale-space},
3415 :     owner = {gk},
3416 :     timestamp = {2008.04.05}
3417 :     }
3418 :    
3419 :     @ARTICLE{GLK:Kuijper2005,
3420 :     author = {Arjan Kuijper and Luc M. J. Florack},
3421 :     title = {Using Catastrophe Theory to Derive Trees from Images},
3422 :     journal = JMIV,
3423 :     year = {2005},
3424 :     volume = {23},
3425 :     pages = {219--238},
3426 :     file = {kuijperJMIV05UsingCatastropheTheoryToDeriveTreesFromImages.pdf:kuijperJMIV05UsingCatastropheTheoryToDeriveTreesFromImages.pdf:PDF},
3427 :     owner = {gk},
3428 :     timestamp = {2008.04.05}
3429 :     }
3430 :    
3431 :     @ARTICLE{GLK:Kuijper2003,
3432 :     author = {Arjan Kuijper and Luc M. J. Florack},
3433 :     title = {The Hierarchical Structure of Images},
3434 :     journal = TIP,
3435 :     year = {2003},
3436 :     volume = {12},
3437 :     pages = {1067--1079},
3438 :     number = {9},
3439 :     month = {September},
3440 :     file = {kuijperTIP03TheHierarchicalStructureOfImages.pdf:kuijperTIP03TheHierarchicalStructureOfImages.pdf:PDF},
3441 :     keywords = {scale-space},
3442 :     owner = {gk},
3443 :     timestamp = {2008.03.29}
3444 :     }
3445 :    
3446 :     @ARTICLE{GLK:Kweon1994,
3447 :     author = {In So Kweon and Takeo Kanade},
3448 :     title = {Extracting Topographic Terrain Features from Elevation Maps},
3449 :     journal = {CVGIP: Image Understanding},
3450 :     year = {1994},
3451 :     volume = {59},
3452 :     pages = {171--182},
3453 :     number = {2},
3454 :     month = {March},
3455 :     file = {kweonCVGIP94ExtractingTopographicTerrainFeaturesFromElevationMaps.pdf:kweonCVGIP94ExtractingTopographicTerrainFeaturesFromElevationMaps.pdf:PDF},
3456 :     keywords = {ridges},
3457 :     owner = {gk},
3458 :     review = {snagged from:
3459 :    
3460 :    
3461 :     http://www.lems.brown.edu/vision/courses/computer-vision/papers/segmentation/surface%20networks/},
3462 :     timestamp = {2008.04.05}
3463 :     }
3464 :    
3465 :     @ARTICLE{GLK:Landman2007,
3466 :     author = {Bennett A. Landman and Jonathan A.D. Farrell and Craig K. Jones and
3467 :     Seth A. Smith and Jerry L. Prince and Susumu Mori},
3468 :     title = {Effects of diffusion weighting schemes on the reproducibility of
3469 :     {DTI}-derived fractional anisotropy, mean diffusivity, and principal
3470 :     eigenvector measurements at {1.5T}},
3471 :     journal = NI,
3472 :     year = {2007},
3473 :     volume = {36},
3474 :     pages = {1123--1138},
3475 :     number = {4},
3476 :     month = {July},
3477 :     file = {landmanNI07EffectsOfDiffusionWeightingSchemesOnTheReproducibilityOfDTIderivedFAMDandPrincipalEigenvectorMeasurementsAt15T.pdf:landmanNI07EffectsOfDiffusionWeightingSchemesOnTheReproducibilityOfDTIderivedFAMDandPrincipalEigenvectorMeasurementsAt15T.pdf:PDF},
3478 :     owner = {gk},
3479 :     timestamp = {2008.05.03}
3480 :     }
3481 :    
3482 :     @ARTICLE{GLK:Laptev2000,
3483 :     author = {Ivan Laptev and Helmut Mayer and Tony Lindeberg and Wolfgang Eckstein
3484 :     and Carsten Steger and Albert Baumgartner},
3485 :     title = {Automatic extraction of roads from aerial images based on scale space
3486 :     and snakes},
3487 :     journal = {Machine Vision and Applications},
3488 :     year = {2000},
3489 :     volume = {12},
3490 :     pages = {23--31},
3491 :     number = {1},
3492 :     doi = {10.1007/s001380050004},
3493 :     file = {laptev00AutomaticExtractionOfRoadsFromAerialImagesBasedOnScaleSpaceAndSnakes.pdf:laptev00AutomaticExtractionOfRoadsFromAerialImagesBasedOnScaleSpaceAndSnakes.pdf:PDF},
3494 :     owner = {gk},
3495 :     timestamp = {2008.03.22}
3496 :     }
3497 :    
3498 :     @ARTICLE{GLK:Bihan2003,
3499 :     author = {Denis LeBihan},
3500 :     title = {Looking into the Functional Architecture of the Brain with Diffusion
3501 :     {MRI}},
3502 :     journal = {Nature Reviews Neuroscience},
3503 :     year = {2003},
3504 :     volume = {4},
3505 :     pages = {469--480},
3506 :     number = {6},
3507 :     month = {June},
3508 :     doi = {10.1038/nrn1119},
3509 :     file = {LeBihan03LookingIntoTheFunctionalArchitectureOfTheBrainWithDiffusionMRI.pdf:LeBihan03LookingIntoTheFunctionalArchitectureOfTheBrainWithDiffusionMRI.pdf:PDF},
3510 :     keywords = {vaina, dMRI},
3511 :     owner = {gk},
3512 :     timestamp = {2007.09.18}
3513 :     }
3514 :    
3515 :     @TECHREPORT{GLK:Lenglet2003,
3516 :     author = {Christophe Lenglet and Rachid Deriche and Olivier Faugeras},
3517 :     title = {Diffusion Tensor Magnetic Resonance Imaging: {B}rain Connectivity
3518 :     Mapping},
3519 :     institution = INRIA # { (Sophia Antipolis)},
3520 :     year = {2003},
3521 :     number = {4983},
3522 :     month = {Oct},
3523 :     file = {lengletTR03DiffusionTensorMagneticResonanceImagingBrainConnectivityMapping.pdf:lengletTR03DiffusionTensorMagneticResonanceImagingBrainConnectivityMapping.pdf:PDF},
3524 :     owner = {gk},
3525 :     timestamp = {2008.04.05}
3526 :     }
3527 :    
3528 :     @ARTICLE{GLK:lengletTMI06,
3529 :     author = {C Lenglet and M Rousson and R Deriche},
3530 :     title = {{DTI} Segmentation by Statistical Surface Evolution},
3531 :     journal = TMI,
3532 :     year = {2006},
3533 :     volume = {25},
3534 :     pages = {685--700},
3535 :     month = {June},
3536 :     file = {lengletTMI06DTISegmentationByStatisticalSurfaceEvolution.pdf:lengletTMI06DTISegmentationByStatisticalSurfaceEvolution.pdf:PDF},
3537 :     issue = {6},
3538 :     owner = {gk},
3539 :     timestamp = {2007.07.16}
3540 :     }
3541 :    
3542 :     @ARTICLE{GLK:lengletJMIV06,
3543 :     author = {C Lenglet and M Rousson and R Deriche and O Faugeras},
3544 :     title = {Statistics on the Manifold of Multivariate Normal Distributions:
3545 :     Theory and Application to Diffusion Tensor {MRI} Processing},
3546 :     journal = JMIV,
3547 :     year = {2006},
3548 :     volume = {25},
3549 :     pages = {423--444},
3550 :     number = {3},
3551 :     file = {lengletJMIV06StatisticsOnTheManifoldOfMultivariateNormalDistributionsTheoryAndApplicationToDiffusionTensorMRIProcessing.pdf:lengletJMIV06StatisticsOnTheManifoldOfMultivariateNormalDistributionsTheoryAndApplicationToDiffusionTensorMRIProcessing.pdf:PDF},
3552 :     owner = {gk},
3553 :     timestamp = {2007.07.16}
3554 :     }
3555 :    
3556 :     @INPROCEEDINGS{DBLP:Lenglet05,
3557 :     author = {C Lenglet and M Rousson and R Deriche and O D Faugeras and S Lehericy
3558 :     and K Ugurbil},
3559 :     title = {A Riemannian Approach to Diffusion Tensor Images Segmentation.},
3560 :     booktitle = IPMI # { 2005},
3561 :     year = {2005},
3562 :     pages = {591--602},
3563 :     address = {Glenwood Springs, CO, USA},
3564 :     month = {July},
3565 :     file = {lengletIPMI05RiemannianApproachToDiffusionTensorImagesSegmentation.pdf:lengletIPMI05RiemannianApproachToDiffusionTensorImagesSegmentation.pdf:PDF},
3566 :     owner = {gk},
3567 :     timestamp = {2007.07.16}
3568 :     }
3569 :    
3570 :     @INPROCEEDINGS{GLK:Levet2007,
3571 :     author = {Florian Levet and Xavier Granier and Christophe Schlick},
3572 :     title = {Triangulation of uniform particle systems: its application to the
3573 :     implicit surface texturing},
3574 :     booktitle = {Proc. Winter School of Computer Graphics (WSCG)},
3575 :     year = {2007},
3576 :     pages = {271--278},
3577 :     file = {levet07TriangulationOfUniformParticleSystemsItsApplicationToTheImplicitSurfaceTexturing.pdf:levet07TriangulationOfUniformParticleSystemsItsApplicationToTheImplicitSurfaceTexturing.pdf:PDF},
3578 :     keywords = {particles},
3579 :     owner = {gk},
3580 :     timestamp = {2008.03.21}
3581 :     }
3582 :    
3583 :     @INPROCEEDINGS{GLK:Levet2006,
3584 :     author = {Florian Levet and Xavier Granier and Christophe Schlick},
3585 :     title = {Fast sampling of implicit surfaces by particle systems},
3586 :     booktitle = {Proc. Shape Modeling and Applications (SMI)},
3587 :     year = {2006},
3588 :     file = {levetSMI06FastSamplingOfImplicitSurfacesByParticleSystems.pdf:levetSMI06FastSamplingOfImplicitSurfacesByParticleSystems.pdf:PDF},
3589 :     keywords = {particles},
3590 :     owner = {gk},
3591 :     timestamp = {2008.03.21}
3592 :     }
3593 :    
3594 :     @INPROCEEDINGS{GLK:Levet2005,
3595 :     author = {Florian Levet and Julien Hadim and Patrick Reuter and Christophe
3596 :     Schlick},
3597 :     title = {Anisotropic Sampling for Differential Point Rendering of Implicit
3598 :     Surfaces},
3599 :     booktitle = WSCG,
3600 :     year = {2005},
3601 :     volume = {13},
3602 :     file = {levet05AnisotropicSamplingForDifferentialPointRenderingOfImplicitSurfaces.pdf:levet05AnisotropicSamplingForDifferentialPointRenderingOfImplicitSurfaces.pdf:PDF},
3603 :     keywords = {particles},
3604 :     owner = {gk},
3605 :     timestamp = {2008.03.21}
3606 :     }
3607 :    
3608 :     @ARTICLE{GLK:levoy88,
3609 :     author = {M Levoy},
3610 :     title = {Display of Surfaces from Volume Data},
3611 :     journal = {IEEE Computer Graphics \& Applications},
3612 :     year = {1988},
3613 :     volume = {8},
3614 :     pages = {29-37},
3615 :     number = {5},
3616 :     owner = {gk},
3617 :     timestamp = {2009.12.16}
3618 :     }
3619 :    
3620 :     @ARTICLE{GLK:Liang2006,
3621 :     author = {Jianming Liang and Tim McInerney and Demetri Terzopoulos},
3622 :     title = {United Snakes},
3623 :     journal = MedIA,
3624 :     year = {2006},
3625 :     volume = {10},
3626 :     pages = {215--233},
3627 :     number = {2},
3628 :     file = {liangMIA06UnitedSnakes.pdf:liangMIA06UnitedSnakes.pdf:PDF},
3629 :     keywords = {contours},
3630 :     owner = {gk},
3631 :     timestamp = {2008.03.22}
3632 :     }
3633 :    
3634 :     @ARTICLE{GLK:Lifshitz1990,
3635 :     author = {Lawrence M Lifshitz and Stephen M Pizer},
3636 :     title = {A Multiresolution Hierarchical Approach To Image Segmentation Based
3637 :     on Intensity Extrema},
3638 :     journal = PAMI,
3639 :     year = {1990},
3640 :     volume = {12},
3641 :     pages = {529--540},
3642 :     number = {6},
3643 :     file = {lifshitzPAMI90AMultiresolutionHierarchicalApproachToImageSegmentationBasedOnIntensityExtrema.pdf:lifshitzPAMI90AMultiresolutionHierarchicalApproachToImageSegmentationBasedOnIntensityExtrema.pdf:PDF},
3644 :     keywords = {scale-space},
3645 :     owner = {gk},
3646 :     timestamp = {2008.03.22}
3647 :     }
3648 :    
3649 :     @ARTICLE{GLK:lin01,
3650 :     author = {Ching-Po Lin and Wen-Yih Isaac Tseng and Hui-Cheng Cheng and Jyh-Horng
3651 :     Chen},
3652 :     title = {Validation of Diffusion Tensor Magnetic Resonance Axonal Fiber Imaging
3653 :     with Registered Manganese-Enhanced Optic Tracts},
3654 :     journal = NI,
3655 :     year = {2001},
3656 :     volume = {14},
3657 :     pages = {1035--1047},
3658 :     file = {linNEUROIMAGE01ValidationOfDiffusionTensorMagneticResonanceAxonalFiberImagingWithRegisteredManganeseEnhancedOpticTracts.pdf:linNEUROIMAGE01ValidationOfDiffusionTensorMagneticResonanceAxonalFiberImagingWithRegisteredManganeseEnhancedOpticTracts.pdf:PDF},
3659 :     owner = {gk},
3660 :     timestamp = {2007.07.30}
3661 :     }
3662 :    
3663 :     @INCOLLECTION{GLK:Lindeberg1999,
3664 :     author = {Tony Lindeberg},
3665 :     title = {Principles for Automatic Scale Selection},
3666 :     booktitle = {Handbook on Computer Vision and Applications},
3667 :     publisher = {Academic Press},
3668 :     year = {1999},
3669 :     volume = {2},
3670 :     pages = {239--274},
3671 :     address = {Boston, USA},
3672 :     file = {:lindeberg99PrinciplesForAutomaticScaleSelection.pdf:PDF},
3673 :     owner = {gk},
3674 :     timestamp = {2009.03.27}
3675 :     }
3676 :    
3677 :     @ARTICLE{GLK:Lindeberg1998,
3678 :     author = {T Lindeberg},
3679 :     title = {Edge detection and ridge detection with automatic scale selection},
3680 :     journal = IJCV,
3681 :     year = {1998},
3682 :     volume = {30},
3683 :     pages = {117--154},
3684 :     number = {2},
3685 :     month = {November},
3686 :     file = {lindebergIJCV98EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:lindebergIJCV98EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:PDF},
3687 :     owner = {gk},
3688 :     timestamp = {2007.07.09}
3689 :     }
3690 :    
3691 :     @ARTICLE{GLK:Lindeberg1998a,
3692 :     author = {Tony Lindeberg},
3693 :     title = {Feature Detection with Automatic Scale Selection},
3694 :     journal = IJCV,
3695 :     year = {1998},
3696 :     volume = {30},
3697 :     pages = {77--116},
3698 :     number = {2},
3699 :     month = {Nov},
3700 :     doi = {10.1023/A:1008045108935},
3701 :     file = {lindeberg98FeatureDetectionWithAutomaticScaleSelection.pdf:lindeberg98FeatureDetectionWithAutomaticScaleSelection.pdf:PDF},
3702 :     owner = {gk},
3703 :     review = {Equation (120) gives a normalization factor discrete data, and notes
3704 :     that unlike using sqrt(t), it is non-zero at t=0},
3705 :     timestamp = {2008.04.06}
3706 :     }
3707 :    
3708 :     @INPROCEEDINGS{GLK:Lindeberg1996,
3709 :     author = {Tony Lindeberg},
3710 :     title = {Edge Detection and Ridge Detection with Automatic Scale Selection},
3711 :     booktitle = CVPR # { 1996},
3712 :     year = {1996},
3713 :     pages = {465--470},
3714 :     month = {June},
3715 :     doi = {10.1109/CVPR.1996.517113},
3716 :     file = {lindebergCVPR96EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:lindebergCVPR96EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:PDF},
3717 :     owner = {gk},
3718 :     timestamp = {2007.07.09}
3719 :     }
3720 :    
3721 :     @ARTICLE{GLK:Lindeberg1994,
3722 :     author = {T Lindeberg},
3723 :     title = {Scale-space theory: A basic tool for analysing structures at different
3724 :     scales},
3725 :     journal = {Journal of Applied Statistics},
3726 :     year = {1994},
3727 :     volume = {21},
3728 :     pages = {224--270},
3729 :     number = {2},
3730 :     file = {lindeberg94ScaleSpaceTheoryABasicToolForAnalysingStructuresAtDiffferentScales.pdf:lindeberg94ScaleSpaceTheoryABasicToolForAnalysingStructuresAtDiffferentScales.pdf:PDF},
3731 :     owner = {gk},
3732 :     timestamp = {2007.07.09}
3733 :     }
3734 :    
3735 :     @ARTICLE{GLK:Lindeberg1993,
3736 :     author = {T Lindeberg},
3737 :     title = {Discrete Derivative Approximations with Scale-Space Properties: A
3738 :     Basis for Low-Level Feature Extraction},
3739 :     journal = JMIV,
3740 :     year = {1993},
3741 :     volume = {3},
3742 :     pages = {349--376},
3743 :     number = {4},
3744 :     file = {lindeberg93DiscreteDerivativeApproximationsWithScaleSpacePropertiesABasisForLowLevelFeatureExtraction.pdf:lindeberg93DiscreteDerivativeApproximationsWithScaleSpacePropertiesABasisForLowLevelFeatureExtraction.pdf:PDF},
3745 :     owner = {gk},
3746 :     timestamp = {2007.07.09}
3747 :     }
3748 :    
3749 :     @ARTICLE{GLK:Lindeberg1993a,
3750 :     author = {Tony Lindeberg},
3751 :     title = {Effective scale: a natural unit for measuring scale-space lifetime},
3752 :     journal = PAMI,
3753 :     year = {1993},
3754 :     volume = {15},
3755 :     pages = {1068--1074},
3756 :     number = {10},
3757 :     month = {October},
3758 :     doi = {10.1109/34.254063},
3759 :     file = {lindebergPAMI93EffectiveScaleANaturalUnitForMeasuringScaleSpaceLifetime.pdf:lindebergPAMI93EffectiveScaleANaturalUnitForMeasuringScaleSpaceLifetime.pdf:PDF},
3760 :     keywords = {scale-space},
3761 :     owner = {gk},
3762 :     timestamp = {2008.03.28}
3763 :     }
3764 :    
3765 :     @ARTICLE{GLK:Lindeberg1990,
3766 :     author = {Tony Lindeberg},
3767 :     title = {Scale-Space for Discrete Signals},
3768 :     journal = PAMI,
3769 :     year = {1990},
3770 :     volume = {12},
3771 :     pages = {234--254},
3772 :     number = {3},
3773 :     month = {March},
3774 :     file = {lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:PDF},
3775 :     owner = {gk},
3776 :     timestamp = {2007.11.06}
3777 :     }
3778 :    
3779 :     @ARTICLE{GLK:Lindeberg1990a,
3780 :     author = {Tony Lindeberg},
3781 :     title = {Scale-space for discrete signals},
3782 :     journal = PAMI,
3783 :     year = {1990},
3784 :     volume = {12},
3785 :     pages = {234--254},
3786 :     number = {3},
3787 :     month = {March},
3788 :     doi = {10.1109/34.49051},
3789 :     file = {lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:PDF},
3790 :     keywords = {scale-space},
3791 :     owner = {gk},
3792 :     timestamp = {2008.03.28}
3793 :     }
3794 :    
3795 :     @ARTICLE{GLK:Linsen2008,
3796 :     author = {Lars Linsen and Tran Van Long and Paul Rosenthal and Stephan Rosswog},
3797 :     title = {Surface Extraction from Multi-field Particle Volume Data Using Multi-dimensional
3798 :     Cluster Visualization},
3799 :     journal = TVCG,
3800 :     year = {2008},
3801 :     volume = {14},
3802 :     pages = {1483--1490},
3803 :     number = {6},
3804 :     file = {:Users/gk/lit/pdf/linsenVIS08SurfaceExtractionFromMultiFieldParticleVolumeDataUsingMultidimensionalClusterVisualization.pdf:PDF},
3805 :     owner = {gk},
3806 :     timestamp = {2009.06.28}
3807 :     }
3808 :    
3809 :     @INPROCEEDINGS{GLK:Lloret2000,
3810 :     author = {David Lloret and Joan Serrat and Antonio M L{\'o}pez and Andr{\'e}s
3811 :     Soler and Juan J Villanueva},
3812 :     title = {Retinal image registration using creases as anatomical landmarks},
3813 :     booktitle = {Proc. 15th Intl. Conf. Pattern Recognition},
3814 :     year = {2000},
3815 :     volume = {3},
3816 :     pages = {203--206},
3817 :     month = {Sep},
3818 :     doi = {10.1109/ICPR.2000.903521},
3819 :     file = {lloret00RetinalImageRegistrationUsingCreasesAsAnatomicalLandmarks.pdf:lloret00RetinalImageRegistrationUsingCreasesAsAnatomicalLandmarks.pdf:PDF},
3820 :     keywords = {ridges, registration},
3821 :     owner = {gk},
3822 :     timestamp = {2008.04.03}
3823 :     }
3824 :    
3825 :     @ARTICLE{GLK:Lopez1999,
3826 :     author = {A M Lopez and F Lumbreras and J Serrat and J J Villanueva},
3827 :     title = {Evaluation of Methods for Ridge and Valley Detection},
3828 :     journal = PAMI,
3829 :     year = {1999},
3830 :     volume = {21},
3831 :     pages = {327--335},
3832 :     number = {4},
3833 :     file = {lopezPAMI99EvaluationOfMethodsForRidgeAndValleyDetection.pdf:lopezPAMI99EvaluationOfMethodsForRidgeAndValleyDetection.pdf:PDF},
3834 :     owner = {gk},
3835 :     timestamp = {2007.07.09}
3836 :     }
3837 :    
3838 :     @ARTICLE{GLK:Lorensen1987,
3839 :     author = {W E Lorensen and H E Cline},
3840 :     title = {Marching Cubes: {A} High Resolution {3D} Surface Construction Algorithm},
3841 :     journal = {Computer Graphics},
3842 :     year = {1987},
3843 :     volume = {21},
3844 :     pages = {163--169},
3845 :     number = {4},
3846 :     doi = {10.1145/37401.37422},
3847 :     file = {lorensenSIGGRAPH87MarchingCubesAHighResolution3DSurfaceConstructionAlgorithm.pdf.pdf:lorensenSIGGRAPH87MarchingCubesAHighResolution3DSurfaceConstructionAlgorithm.pdf.pdf:PDF},
3848 :     owner = {gk},
3849 :     timestamp = {2007.07.09}
3850 :     }
3851 :    
3852 :     @ARTICLE{GLK:Lu2006,
3853 :     author = {Hanzhang Lu and Jens H. Jensen and Anita Ramani and Joseph A. Helpern},
3854 :     title = {Three-dimensional characterization of non-gaussian water diffusion
3855 :     in humans using diffusion kurtosis imaging},
3856 :     journal = NMRB,
3857 :     year = {2006},
3858 :     volume = {19},
3859 :     pages = {236--247},
3860 :     doi = {10.1002/nbm.1020},
3861 :     file = {luNMR06ThreeDimensionalCharacterizationOfNonGaussianWaterDifffusionInHumansUsingDiffusionKurtosisImaging.pdf:luNMR06ThreeDimensionalCharacterizationOfNonGaussianWaterDifffusionInHumansUsingDiffusionKurtosisImaging.pdf:PDF},
3862 :     owner = {gk},
3863 :     timestamp = {2008.07.01}
3864 :     }
3865 :    
3866 :     @ARTICLE{GLK:lu04,
3867 :     author = {Stanley Lu and Daniel Ahn and Glyn Johnson and Meng Law and David
3868 :     Zagzag and Robert I. Grossman},
3869 :     title = {Diffusion-Tensor {MR} imaging of Intracranial Neoplasia and Associated
3870 :     Peritumoral Edema: Introduction of the Tumor Infiltration Index},
3871 :     journal = {Neuroradiology},
3872 :     year = {2004},
3873 :     volume = {232},
3874 :     pages = {221--228},
3875 :     number = {1},
3876 :     month = {July},
3877 :     file = {luRAD04DTMRIOfIntracranialNeoplasiaAndAssociatedPeritumoralEdemaIntroductionOfTheTumorInfiltrationIndex.pdf:luRAD04DTMRIOfIntracranialNeoplasiaAndAssociatedPeritumoralEdemaIntroductionOfTheTumorInfiltrationIndex.pdf:PDF},
3878 :     keywords = {neurosurgery},
3879 :     owner = {gk},
3880 :     timestamp = {2007.07.30}
3881 :     }
3882 :    
3883 :     @BOOK{GLK:Ludwig1956,
3884 :     title = {Atlas cerebri humani},
3885 :     publisher = {S. Karger},
3886 :     year = {1956},
3887 :     author = {E Ludwig and L Klingler},
3888 :     owner = {gk},
3889 :     timestamp = {2009.04.21}
3890 :     }
3891 :    
3892 :     @INPROCEEDINGS{GLK:L'opez1998,
3893 :     author = {Antonio M L{\'o}pez and David LLoret and Joan Serrat},
3894 :     title = {Creaseness Measures for {CT} and {MR} Image Registration},
3895 :     booktitle = CVPR,
3896 :     year = {1998},
3897 :     pages = {694--699},
3898 :     month = {June},
3899 :     doi = {10.1109/CVPR.1998.698679},
3900 :     file = {lopez98CreasenessMeasuresForCTandMRImageRegistration.pdf:lopez98CreasenessMeasuresForCTandMRImageRegistration.pdf:PDF},
3901 :     keywords = {creases},
3902 :     owner = {gk},
3903 :     timestamp = {2008.04.03}
3904 :     }
3905 :    
3906 :     @BOOK{GLK:MacKay2003,
3907 :     title = {Information Theory, Inference, and Learning Algorithms},
3908 :     publisher = {Cambridge University Press},
3909 :     year = {2003},
3910 :     author = {David J. C. MacKay},
3911 :     file = {mackay03InformationTheoryInferenceAndLearningAlgorithms.pdf:mackay03InformationTheoryInferenceAndLearningAlgorithms.pdf:PDF},
3912 :     owner = {gk},
3913 :     timestamp = {2008.07.15}
3914 :     }
3915 :    
3916 :     @ARTICLE{GLK:Magnor2005,
3917 :     author = {M Magnor and G Kindlmann and C Hansen and N Duric},
3918 :     title = {Reconstruction and Visualization of Planetary Nebulae},
3919 :     journal = TVCG,
3920 :     year = {2005},
3921 :     volume = {11},
3922 :     pages = {485--496},
3923 :     number = {8},
3924 :     owner = {gk},
3925 :     timestamp = {2007.12.11}
3926 :     }
3927 :    
3928 :     @INPROCEEDINGS{GLK:Magnor2004,
3929 :     author = {M Magnor and G Kindlmann and C Hansen and N Duric},
3930 :     title = {Constrained Inverse Volume Rendering for Planetary Nebulae},
3931 :     booktitle = VIS # { 2004},
3932 :     year = {2004},
3933 :     month = {October},
3934 :     owner = {gk},
3935 :     timestamp = {2007.12.11}
3936 :     }
3937 :    
3938 :     @ARTICLE{GLK:Maintz1996,
3939 :     author = {J.B. Antoine Maintz and Petra A. van den Elsen and Max A. Viergever},
3940 :     title = {Evaluation of Ridge Seeking Operators for Multimodality Medical Image
3941 :     Matching},
3942 :     journal = PAMI,
3943 :     year = {1996},
3944 :     volume = {18},
3945 :     pages = {353--365},
3946 :     number = {4},
3947 :     file = {maintzPAMI96EvaluationOfRidgeSeekingOperatorsForMultimodalityMedicalImageMatching.pdf:maintzPAMI96EvaluationOfRidgeSeekingOperatorsForMultimodalityMedicalImageMatching.pdf:PDF},
3948 :     keywords = {creases},
3949 :     owner = {gk},
3950 :     timestamp = {2008.03.22}
3951 :     }
3952 :    
3953 :     @ARTICLE{GLK:Malladi1995,
3954 :     author = {Ravikanth Malladi and James A Sethian and Baba C Vemuri},
3955 :     title = {Shape Modeling with Front Propagation: {A} Level Set Approach},
3956 :     journal = PAMI,
3957 :     year = {1995},
3958 :     volume = {17},
3959 :     pages = {158--175},
3960 :     number = {2},
3961 :     file = {malladi95ShapeModelingWithFrontPropagationALevelSetApproach.pdf:malladi95ShapeModelingWithFrontPropagationALevelSetApproach.pdf:PDF},
3962 :     keywords = {contours},
3963 :     owner = {gk},
3964 :     timestamp = {2008.03.25}
3965 :     }
3966 :    
3967 :     @ARTICLE{GLK:Manniesing2006,
3968 :     author = {Rashindra Manniesing and Max A. Viergever and Wiro J. Niessen},
3969 :     title = {Vessel enhancing diffusion: {A} scale space representation of vessel
3970 :     structures},
3971 :     journal = MedIA,
3972 :     year = {2006},
3973 :     volume = {10},
3974 :     pages = {815--825},
3975 :     number = {6},
3976 :     month = {Dec},
3977 :     doi = {10.1016/j.media.2006.06.003},
3978 :     file = {manniesingMedIA06VesselEnhancingDiffusionAScaleSpaceRepresentationOfVesselStructures.pdf:manniesingMedIA06VesselEnhancingDiffusionAScaleSpaceRepresentationOfVesselStructures.pdf:PDF},
3979 :     keywords = {scale-space, ridges},
3980 :     owner = {gk},
3981 :     timestamp = {2008.04.05}
3982 :     }
3983 :    
3984 :     @INPROCEEDINGS{GLK:Manssour2002,
3985 :     author = {Isabel H. Manssour and Sergio S. Furuie and S\'{\i}lvia D. Olabarriaga
3986 :     and Carla Maria Dal Sasso Freitas},
3987 :     title = {Visualizing Inner Structures in Multimodal Volume Data},
3988 :     booktitle = {Proceedings Brazilian Symposium on Computer Graphics and Image Processing
3989 :     (SIBGRAPI)},
3990 :     year = {2002},
3991 :     pages = {51--58},
3992 :     file = {manssour02VisualizingInnerStructuresInMultimodalVolumeData.pdf:manssour02VisualizingInnerStructuresInMultimodalVolumeData.pdf:PDF},
3993 :     owner = {gk},
3994 :     timestamp = {2008.01.21}
3995 :     }
3996 :    
3997 :     @ARTICLE{GLK:Mark1979,
3998 :     author = {D M Mark},
3999 :     title = {Topology of ridge patterns: Randomness and Constraints},
4000 :     journal = {Geological Society of America Bulletin, Part I},
4001 :     year = {1979},
4002 :     pages = {164--172},
4003 :     owner = {gk},
4004 :     timestamp = {2007.07.08}
4005 :     }
4006 :    
4007 :     @BOOK{GLK:Marsden1996,
4008 :     title = {Vector Calculus},
4009 :     publisher = {W.H. Freeman and Company},
4010 :     year = {1996},
4011 :     author = {J E Marsden and A J Tromba},
4012 :     address = {New York, New York},
4013 :     owner = {gk},
4014 :     timestamp = {2007.07.07}
4015 :     }
4016 :    
4017 :     @INPROCEEDINGS{martin-fernandezMICCAI04,
4018 :     author = {M. Martin-Fernandez and C.-F. Westin and C. Alberola-Lopez},
4019 :     title = {3D Bayesian Regularization of Diffusion Tensor {MRI} using Multivariate
4020 :     Gaussian Markov Random Fields},
4021 :     booktitle = MICCAI # { 2004},
4022 :     year = {2004},
4023 :     series = {Lecture Notes in Computer Science},
4024 :     pages = {351--359},
4025 :     address = {Rennes - Saint Malo, France},
4026 :     month = {September},
4027 :     owner = {gk},
4028 :     timestamp = {2007.07.30}
4029 :     }
4030 :    
4031 :     @ARTICLE{GLK:Max1995,
4032 :     author = {Nelson Max},
4033 :     title = {Optical Models for Direct Volume Rendering},
4034 :     journal = TVCG,
4035 :     year = {1995},
4036 :     volume = {1},
4037 :     pages = {99--108},
4038 :     number = {2},
4039 :     doi = {10.1109/2945.468400},
4040 :     file = {maxTVCG95OpticalModelsForDirectVolumeRendering.pdf:maxTVCG95OpticalModelsForDirectVolumeRendering.pdf:PDF},
4041 :     owner = {gk},
4042 :     timestamp = {2008.01.21}
4043 :     }
4044 :    
4045 :     @ARTICLE{GLK:Maxwell1870,
4046 :     author = {J Maxwell},
4047 :     title = {On Hills and Dales},
4048 :     journal = {The London, Edinburgh and Dublin Philosophical Magazine and Journal
4049 :     of Science},
4050 :     year = {1870},
4051 :     volume = {40},
4052 :     pages = {421--425},
4053 :     number = {269},
4054 :     file = {maxwell1870OnHillsAndDales.pdf:maxwell1870OnHillsAndDales.pdf:PDF},
4055 :     owner = {gk},
4056 :     review = {snagged PDF from:
4057 :    
4058 :    
4059 :     http://www.lems.brown.edu/vision/courses/computer-vision/papers/segmentation/surface%20networks/},
4060 :     timestamp = {2007.07.09}
4061 :     }
4062 :    
4063 :     @BOOK{GLK:mccarthy,
4064 :     title = {An Introduction to Theoretical Kinematics},
4065 :     publisher = {Massachusetts Institute of Technology},
4066 :     year = {1990},
4067 :     author = {J M McCarthy},
4068 :     address = {Massachusetts},
4069 :     owner = {gk},
4070 :     timestamp = {2007.07.30}
4071 :     }
4072 :    
4073 :     @INPROCEEDINGS{GLK:McGraw2006,
4074 :     author = {Tim McGraw and Baba C. Vemuri and Bob Yezierski and Thomas Mareci},
4075 :     title = {von {M}ises-{F}isher mixture model of the diffusion {ODF}},
4076 :     booktitle = ISBI,
4077 :     year = {2006},
4078 :     pages = {65--68},
4079 :     month = {April},
4080 :     doi = {10.1109/ISBI.2006.1624853},
4081 :     file = {mcgrawISBI06VonMisesFisherMixtureModelOfTheDiffusionODF.pdf:mcgrawISBI06VonMisesFisherMixtureModelOfTheDiffusionODF.pdf:PDF},
4082 :     owner = {gk},
4083 :     timestamp = {2008.01.22}
4084 :     }
4085 :    
4086 :     @ARTICLE{GLK:McInerney2000,
4087 :     author = {Tim McInerney and Demetri Terzopoulos},
4088 :     title = {T-snakes: {T}opology adaptive snakes},
4089 :     journal = MedIA,
4090 :     year = {2000},
4091 :     volume = {4},
4092 :     pages = {73--91},
4093 :     number = {2},
4094 :     file = {mcinerneyMIA00TSnakesTopologyAdaptiveSnakes.pdf:mcinerneyMIA00TSnakesTopologyAdaptiveSnakes.pdf:PDF},
4095 :     keywords = {contours},
4096 :     owner = {gk},
4097 :     timestamp = {2008.03.22}
4098 :     }
4099 :    
4100 :     @ARTICLE{GLK:McInerney1999,
4101 :     author = {Tim McInerney and Demetri Terzopoulos},
4102 :     title = {Topology Adaptive Deformable Surfaces for Medical Image Volume Segmentation},
4103 :     journal = TMI,
4104 :     year = {1999},
4105 :     volume = {18},
4106 :     pages = {840--850},
4107 :     file = {mcinerneyTMI99TopologyAdaptiveDeformableSurfacesForMedicalImageVolumeSegmentation.pdf:mcinerneyTMI99TopologyAdaptiveDeformableSurfacesForMedicalImageVolumeSegmentation.pdf:PDF},
4108 :     keywords = {contours},
4109 :     owner = {gk},
4110 :     timestamp = {2008.03.22}
4111 :     }
4112 :    
4113 :     @ARTICLE{GLK:McInerney1996,
4114 :     author = {Tim McInerney and Demetri Terzopoulos},
4115 :     title = {Deformable Models in Medical Image Analysis: {A} Survey},
4116 :     journal = MedIA,
4117 :     year = {1996},
4118 :     volume = {1},
4119 :     pages = {91--108},
4120 :     number = {2},
4121 :     file = {mcinerneyMIA96DeformableModelsInMedicalImageAnalysis.pdf:mcinerneyMIA96DeformableModelsInMedicalImageAnalysis.pdf:PDF},
4122 :     keywords = {contours},
4123 :     owner = {gk},
4124 :     timestamp = {2008.03.22}
4125 :     }
4126 :    
4127 :     @ARTICLE{GLK:Meijering2002,
4128 :     author = {E. Meijering},
4129 :     title = {A Chronology of Interpolation: {F}rom Ancient Astronomy to Modern
4130 :     Signal and Image Processing},
4131 :     journal = {Proceedings of the IEEE},
4132 :     year = {2002},
4133 :     volume = {90},
4134 :     pages = {319--342},
4135 :     number = {3},
4136 :     month = {March},
4137 :     file = {:Users/gk/lit/pdf/meijering02AChronologyOfInterpolation.pdf:PDF},
4138 :     owner = {gk},
4139 :     timestamp = {2009.12.16}
4140 :     }
4141 :    
4142 :     @INPROCEEDINGS{GLK:Meijering1999,
4143 :     author = {E. H. W. Meijering and W. J. Niessen and M. A. Viergever},
4144 :     title = {Piecewise Polynomial Kernels for Image Interpolation: {A} Generalization
4145 :     of Cubic Convolution},
4146 :     booktitle = {Proc. Intl. Conf. on Image Processing (ICIP)},
4147 :     year = {1999},
4148 :     pages = {647--651},
4149 :     bibsource = {DBLP, http://dblp.uni-trier.de},
4150 :     owner = {gk},
4151 :     timestamp = {2009.12.16}
4152 :     }
4153 :    
4154 :     @ARTICLE{GLK:Melie-Garcia2008,
4155 :     author = {Lester Melie-Garc\'{i}a and Erick J. Canales-Rodr\'{i}guez and Yasser
4156 :     Alem\'{a}n-G\'{o}mez and Ching-Po Lin and Yasser Iturria-Medina and
4157 :     Pedro A. Vald\'{e}s-Hern\'{a}ndez},
4158 :     title = {A {B}ayesian framework to identify principal intravoxel diffusion
4159 :     profiles based on diffusion-weighted {MR} imaging},
4160 :     journal = {NeuroImage},
4161 :     year = {2008},
4162 :     volume = {42},
4163 :     pages = {750--770},
4164 :     number = {2},
4165 :     doi = {10.1016/j.neuroimage.2008.04.242},
4166 :     file = {:Users/gk/lit/pdf/meliegarciaNI08ABayesianFrameworkToIdentifyPrincipalIntravoxelDiffusionProfilesBasedOnDWMRI.pdf:PDF},
4167 :     owner = {gk},
4168 :     timestamp = {2009.06.26}
4169 :     }
4170 :    
4171 :     @ARTICLE{GLK:Meyer2007,
4172 :     author = {Miriah Meyer and Robert M. Kirby and Ross Whitaker},
4173 :     title = {Topology, Accuracy, and Quality of Isosurface Meshes Using Dynamic
4174 :     Particles},
4175 :     journal = TVCG,
4176 :     year = {2007},
4177 :     volume = {12},
4178 :     pages = {1704--1711},
4179 :     number = {5},
4180 :     month = {Sept--Oct},
4181 :     file = {meyerVis07TopologyAccuracyAndQualityOfIsosurfaceMeshesUsingDynamicParticles.pdf:meyerVis07TopologyAccuracyAndQualityOfIsosurfaceMeshesUsingDynamicParticles.pdf:PDF},
4182 :     owner = {gk},
4183 :     timestamp = {2007.11.03}
4184 :     }
4185 :    
4186 :     @ARTICLE{GLK:Meyer2007a,
4187 :     author = {Miriah Meyer and Blake Nelson and Robert M. Kirby and Ross Whitaker},
4188 :     title = {Particle Systems for Efficient and Accurate High-Order Finite Element
4189 :     Visualization},
4190 :     journal = TVCG,
4191 :     year = {2007},
4192 :     volume = {13},
4193 :     pages = {1015--1026},
4194 :     number = {5},
4195 :     month = {Sept--Oct},
4196 :     file = {meyerTVCG07ParticleSystemsForEfficientAndAccurateHighOrderFiniteElementVisualization.pdf:meyerTVCG07ParticleSystemsForEfficientAndAccurateHighOrderFiniteElementVisualization.pdf:PDF},
4197 :     owner = {gk},
4198 :     timestamp = {2007.11.03}
4199 :     }
4200 :    
4201 :     @ARTICLE{GLK:Meyer2008,
4202 :     author = {Miriah Meyer and Ross Whitaker and Robert M. Kirby and Christian
4203 :     Ledergerber and Hanspeter Pfister},
4204 :     title = {Particle-based Sampling and Meshing of Surfaces in Multimaterial
4205 :     Volumes},
4206 :     journal = TVCG,
4207 :     year = {2008},
4208 :     volume = {14},
4209 :     pages = {1539--1546},
4210 :     number = {6},
4211 :     month = {Nov--Dec},
4212 :     owner = {gk},
4213 :     timestamp = {2009.03.27}
4214 :     }
4215 :    
4216 :     @INPROCEEDINGS{GLK:Meyer2005,
4217 :     author = {Miriah D. Meyer and Pierre Georgel and Ross T. Whitaker},
4218 :     title = {Robust Particle Systems for Curvature Dependent Sampling of Implicit
4219 :     Surfaces},
4220 :     booktitle = {Proc. Shape Modeling and Applications (SMI)},
4221 :     year = {2005},
4222 :     pages = {124--133},
4223 :     month = {June},
4224 :     file = {meyer05RobustParticleSystemsForCurvatureDependentSamplingOfImplicitSurfaces.pdf:meyer05RobustParticleSystemsForCurvatureDependentSamplingOfImplicitSurfaces.pdf:PDF},
4225 :     owner = {gk},
4226 :     timestamp = {2007.11.03}
4227 :     }
4228 :    
4229 :     @ARTICLE{GLK:Mikuni2007,
4230 :     author = {Nobuhiro Mikuni and Tsutomu Okada and Namiko Nishida and Junya Taki
4231 :     and Rei Enatsu and Akio Ikeda and Yukio Miki and Takashi Hanakawa
4232 :     Hidenao Fukuyama and Nobuo Hashimoto},
4233 :     title = {Comparison between motor evoked potential recording and fiber tracking
4234 :     for estimating pyramidal tracts near brain tumors},
4235 :     journal = {Journal of Neurosurgery},
4236 :     year = {2007},
4237 :     volume = {106},
4238 :     pages = {128--133},
4239 :     number = {1},
4240 :     file = {mikuni07ComparisonBetweenMotorEvokedPotentialRecordingAndFiberTrackingForEstimatingPyramidalTractsNearBrainTumors.pdf:mikuni07ComparisonBetweenMotorEvokedPotentialRecordingAndFiberTrackingForEstimatingPyramidalTractsNearBrainTumors.pdf:PDF},
4241 :     keywords = {qazi tumor},
4242 :     owner = {gk},
4243 :     timestamp = {2007.09.19}
4244 :     }
4245 :    
4246 :     @INPROCEEDINGS{GLK:Miller1999,
4247 :     author = {Jason Miller and Jacob Furst},
4248 :     title = {The Maximal Scale Ridge: {I}ncorporating scale into the ridge definition},
4249 :     booktitle = {Proc. Scale Space Theory in Computer Vision},
4250 :     year = {1999},
4251 :     volume = {1682},
4252 :     series = {Lecture Notes in Computer Science},
4253 :     pages = {93--104},
4254 :     publisher = {Springer},
4255 :     doi = {10.1007/3-540-48236-9},
4256 :     file = {miller99MaximalScaleRidge.pdf:miller99MaximalScaleRidge.pdf:PDF},
4257 :     owner = {gk},
4258 :     timestamp = {2008.03.22}
4259 :     }
4260 :    
4261 :     @INPROCEEDINGS{GLK:mitchell88,
4262 :     author = {D Mitchell and A Netravali},
4263 :     title = {Reconstruction Filters in Computer Graphics},
4264 :     booktitle = SIGGRAPH # { 1988},
4265 :     year = {1988},
4266 :     pages = {221--228},
4267 :     month = {August},
4268 :     journal = {Computer Graphics},
4269 :     owner = {gk},
4270 :     timestamp = {2007.07.30}
4271 :     }
4272 :    
4273 :     @INPROCEEDINGS{GLK:Moberts2005,
4274 :     author = {B Moberts and A Vilanova and J J van~Wijk},
4275 :     title = {Evaluation of Fiber Clustering Methods for Diffusion Tensor Imaging},
4276 :     booktitle = VIS # { 2005},
4277 :     year = {2005},
4278 :     pages = {65--72},
4279 :     doi = {http://doi.ieeecomputersociety.org/10.1109/VIS.2005.29},
4280 :     file = {mobartsVis05EvaluationOfFiberClusteringMethodsForDiffusionTensorImaging.pdf:mobartsVis05EvaluationOfFiberClusteringMethodsForDiffusionTensorImaging.pdf:PDF},
4281 :     keywords = {diffusion, tractography, clustering},
4282 :     owner = {gk},
4283 :     timestamp = {2007.07.06}
4284 :     }
4285 :    
4286 :     @TECHREPORT{GLK:Monga1995,
4287 :     author = {Olivier Monga and Nasser Armande and Philippe Montesinos},
4288 :     title = {Thin nets and Crestlines: {A}pplication to Satellite Data and Medical
4289 :     Images},
4290 :     institution = INRIA # { (Rocquencourt)},
4291 :     year = {1995},
4292 :     number = {2480},
4293 :     month = {Feb},
4294 :     file = {mongaTR95ThinNetsAndCrestLinesApplicationToSatelliteDataAndMedicalImages.pdf:mongaTR95ThinNetsAndCrestLinesApplicationToSatelliteDataAndMedicalImages.pdf:PDF},
4295 :     owner = {gk},
4296 :     timestamp = {2008.04.05}
4297 :     }
4298 :    
4299 :     @ARTICLE{GLK:Mori2002a,
4300 :     author = {Susumu Mori and Walter E. Kaufmann and Christos Davatzikos and Bram
4301 :     Stieltjes and Laura Amodei and Kim Fredericksen and Godfrey D. Pearlson
4302 :     and Elias R. Melhem and Meiyappan Solaiyappan and Gerald V. Raymond
4303 :     and Hugo W. Moser and Peter C.M. van Zijl},
4304 :     title = {Imaging Cortical Association Tracts in the Human Brain Using Diffusion-Tensor-Based
4305 :     Axonal Tracking},
4306 :     journal = MRM,
4307 :     year = {2002},
4308 :     volume = {47},
4309 :     pages = {215--223},
4310 :     file = {moriMRM02ImagingCorticalAssociationTractsInTheHumanBrainUsingDifffusionTensorBasedAxonalTracking.pdf:moriMRM02ImagingCorticalAssociationTractsInTheHumanBrainUsingDifffusionTensorBasedAxonalTracking.pdf:PDF},
4311 :     owner = {gk},
4312 :     timestamp = {2008.05.03}
4313 :     }
4314 :    
4315 :     @BOOK{GLK:Mori2005,
4316 :     title = {{MRI} Atlas of Human White Matter},
4317 :     publisher = {Elsevier},
4318 :     year = {2005},
4319 :     author = {S Mori and S Wakana and LM Nagae-Poetscher and PCM Van Zijl},
4320 :     owner = {gk},
4321 :     timestamp = {2007.07.06}
4322 :     }
4323 :    
4324 :     @ARTICLE{GLK:mori06,
4325 :     author = {Susumu Mori and Jiangyang Zhang},
4326 :     title = {Principles of Diffusion Tensor Imaging and Its Applications to Basic
4327 :     Neuroscience Research},
4328 :     journal = {Neuron},
4329 :     year = {2006},
4330 :     volume = {51},
4331 :     pages = {527--539},
4332 :     month = {September},
4333 :     day = {7},
4334 :     file = {moriNeuron06PrinciplesOfDiffusionTensorImagingAndItsApplicationsToBasicNeuroscienceResearch.pdf:moriNeuron06PrinciplesOfDiffusionTensorImagingAndItsApplicationsToBasicNeuroscienceResearch.pdf:PDF},
4335 :     owner = {gk},
4336 :     timestamp = {2007.07.30}
4337 :     }
4338 :    
4339 :     @ARTICLE{GLK:Mori2002,
4340 :     author = {S Mori and P C M van~Zijl},
4341 :     title = {Fiber tracking: {P}rinciples and strategies - {A} technical review},
4342 :     journal = NMRB,
4343 :     year = {2002},
4344 :     volume = {15},
4345 :     pages = {468--480},
4346 :     doi = {DOI:10.1002/nbm.781},
4347 :     file = {moriNMRB02FiberTrackingPrinciplesAndStrategies-review.pdf:moriNMRB02FiberTrackingPrinciplesAndStrategies-review.pdf:PDF},
4348 :     owner = {gk},
4349 :     timestamp = {2007.07.06}
4350 :     }
4351 :    
4352 :     @PHDTHESIS{GLK:Morse1994,
4353 :     author = {B S Morse},
4354 :     title = {Computation of Object Cores from Grey-Level Images},
4355 :     school = {University of North Carolina at Chapel Hill},
4356 :     year = {1994},
4357 :     address = {Chapel Hill, NC},
4358 :     file = {morsePHD94ComputationOfObjectCoresFromGrayLevelImages.pdf:morsePHD94ComputationOfObjectCoresFromGrayLevelImages.pdf:PDF},
4359 :     owner = {gk},
4360 :     timestamp = {2007.07.09}
4361 :     }
4362 :    
4363 :     @INPROCEEDINGS{GLK:Morse2005,
4364 :     author = {Bryan S. Morse and Weiming Liu and Terry S. Yoo and Kalpathi Subramanian},
4365 :     title = {Active Contours Using a Constraint-Based Implicit Representation},
4366 :     booktitle = CVPR,
4367 :     year = {2005},
4368 :     volume = {1},
4369 :     pages = {285--292},
4370 :     month = {June},
4371 :     doi = {10.1109/CVPR.2005.59},
4372 :     file = {morseCVPR05ActiveContoursUsingAConstraintBasedImplicitRepresentation.pdf:morseCVPR05ActiveContoursUsingAConstraintBasedImplicitRepresentation.pdf:PDF},
4373 :     keywords = {particles},
4374 :     owner = {gk},
4375 :     review = {very interesting: using particles in a radial-basis-function representation
4376 :     of an implicit surface- so they're rather expressive particles to
4377 :     represent a surface (implicitly), and can be drawn towards an edge
4378 :     function (external energy). However, the particles also have inter-particle
4379 :     repulsion, to keep the points well distributed.},
4380 :     timestamp = {2008.03.26}
4381 :     }
4382 :    
4383 :     @ARTICLE{GLK:moseley90,
4384 :     author = {M E Moseley and Y Cohen and J Mintorovitch and L Chileuitt and H
4385 :     Shimizu and J Kucharczyk and M F Wendland and P R Weinstein},
4386 :     title = {Early detection of regional cerebral ischemia in cats: {C}omparison
4387 :     of diffusion- and {T2}-weighted {MRI} and spectroscopy},
4388 :     journal = MRM,
4389 :     year = {1990},
4390 :     volume = {14},
4391 :     pages = {330--346},
4392 :     number = {2},
4393 :     month = {May},
4394 :     owner = {gk},
4395 :     timestamp = {2007.07.30}
4396 :     }
4397 :    
4398 :     @ARTICLE{GLK:Moller1997,
4399 :     author = {Torsten M{\"o}ller and Raghu Machiraju and Klaus Mueller and Roni
4400 :     Yagel},
4401 :     title = {Evaluation and Design of Filters Using a {T}aylor Series Expansion},
4402 :     journal = TVCG,
4403 :     year = {1997},
4404 :     volume = {3},
4405 :     pages = {184--199},
4406 :     number = {2},
4407 :     file = {mollerTVCG97EvalAndDesignOfFiltersUsingTaylorSeriesExpansion.pdf:mollerTVCG97EvalAndDesignOfFiltersUsingTaylorSeriesExpansion.pdf:PDF},
4408 :     keywords = {filters},
4409 :     owner = {gk},
4410 :     timestamp = {2008.03.25}
4411 :     }
4412 :    
4413 :     @ARTICLE{GLK:Nattkemper2004,
4414 :     author = {Tim W. Nattkemper},
4415 :     title = {Multivariate image analysis in biomedicine},
4416 :     journal = {Journal of Biomedical Informatics},
4417 :     year = {2004},
4418 :     volume = {37},
4419 :     pages = {380--391},
4420 :     number = {5},
4421 :     month = {Oct.},
4422 :     doi = {doi:10.1016/j.jbi.2004.07.010},
4423 :     file = {nattkemper04MultivariateImageAnalysisInBiomedicine.pdf:nattkemper04MultivariateImageAnalysisInBiomedicine.pdf:PDF},
4424 :     owner = {gk},
4425 :     timestamp = {2008.05.02}
4426 :     }
4427 :    
4428 :     @ARTICLE{GLK:Neil2006,
4429 :     author = {Jeffrey J. Neil and Terrie E. Inder},
4430 :     title = {Detection of Wallerian Degeneration in a Newborn by Diffusion Magnetic
4431 :     Resonance Imaging ({MRI})},
4432 :     journal = {Journal of Child Neurology},
4433 :     year = {2006},
4434 :     volume = {21},
4435 :     pages = {115--118},
4436 :     doi = {10.1177/08830738060210021501},
4437 :     file = {neil06DetectionOfWallerianDegenerationInANewbornByDiffusionMagnaticResonanceImaging.pdf:neil06DetectionOfWallerianDegenerationInANewbornByDiffusionMagnaticResonanceImaging.pdf:PDF},
4438 :     keywords = {vaina},
4439 :     owner = {gk},
4440 :     timestamp = {2007.09.10}
4441 :     }
4442 :    
4443 :     @ARTICLE{GLK:Nickalls1993,
4444 :     author = {R W D Nickalls},
4445 :     title = {A new approach to solving the cubic: {C}ardan's solution revealed},
4446 :     journal = {The Mathematical Gazette},
4447 :     year = {1993},
4448 :     volume = {77},
4449 :     pages = {354--359},
4450 :     owner = {gk},
4451 :     timestamp = {2008.08.01}
4452 :     }
4453 :    
4454 :     @ARTICLE{GLK:Nicolay2001,
4455 :     author = {K Nicolay and K P J Braun and R A de~Graaf and R M Dijkhuizen and
4456 :     M J Kruiskamp},
4457 :     title = {Diffusion {NMR} spectroscopy},
4458 :     journal = NMRB,
4459 :     year = {2001},
4460 :     volume = {14},
4461 :     pages = {94--111},
4462 :     file = {nicolayNMRB01DiffusionNMRSpectroscopy.pdf:nicolayNMRB01DiffusionNMRSpectroscopy.pdf:PDF},
4463 :     owner = {gk},
4464 :     timestamp = {2007.07.11}
4465 :     }
4466 :    
4467 :     @ARTICLE{GLK:Niessen1997,
4468 :     author = {W. J. Niessen and J. S. Duncan and M. Nielsen and L. M. J. Florack
4469 :     and B. M. ter Haar Romeny and M. A. Viergever},
4470 :     title = {A Multiscale Approach to Image Sequence Analysis},
4471 :     journal = {Computer Vision and Image Understanding},
4472 :     year = {1997},
4473 :     volume = {65},
4474 :     pages = {259--268},
4475 :     number = {2},
4476 :     month = {Feb},
4477 :     file = {niessen97AMultiscaleApproachToImageSequenceAnalysis.pdf:niessen97AMultiscaleApproachToImageSequenceAnalysis.pdf:PDF},
4478 :     keywords = {scale-space},
4479 :     owner = {gk},
4480 :     timestamp = {2008.04.05}
4481 :     }
4482 :    
4483 :     @INPROCEEDINGS{GLK:niethammerEMBS06,
4484 :     author = {M Niethammer and R {San Jose Estepar} and S Bouix and M Shenton and
4485 :     C-F Westin},
4486 :     title = {On Diffusion Tensor Estimation},
4487 :     booktitle = {Proc. 28th IEEE EMBS},
4488 :     year = {2006},
4489 :     pages = {2622--2625},
4490 :     file = {niethammerEMBS06OnDiffusionTensorEstimation.pdf:niethammerEMBS06OnDiffusionTensorEstimation.pdf:PDF},
4491 :     owner = {gk},
4492 :     timestamp = {2007.07.31}
4493 :     }
4494 :    
4495 :     @ARTICLE{GLK:Nimsky2006b,
4496 :     author = {Christopher Nimsky and Oliver Ganslandt and Frank Enders and Dorit
4497 :     Merhof and Thilo Hammen and Michael Buchfelder},
4498 :     title = {Visualization Strategies for Major White Matter Tracts for Intraoperative
4499 :     Use},
4500 :     journal = {International Journal of Computer Assisted Radiology and Surgery},
4501 :     year = {2006},
4502 :     volume = {1},
4503 :     pages = {13--22},
4504 :     number = {1},
4505 :     month = {March},
4506 :     doi = {10.1007/s11548-006-0003-2},
4507 :     file = {nimsky06VisualizationStrategiesForMajorWhiteMatterTractsForIntraoperativeUse.pdf:nimsky06VisualizationStrategiesForMajorWhiteMatterTractsForIntraoperativeUse.pdf:PDF},
4508 :     keywords = {neurosurgery},
4509 :     owner = {gk},
4510 :     timestamp = {2008.01.21}
4511 :     }
4512 :    
4513 :     @ARTICLE{GLK:Nimsky2006a,
4514 :     author = {Christopher Nimsky and Oliver Ganslandt and Rudolf Fahlbusch},
4515 :     title = {Implementation of Fiber Tract Navigation},
4516 :     journal = {Neurosurgery},
4517 :     year = {2006},
4518 :     volume = {58},
4519 :     pages = {ONS-292--304},
4520 :     number = {4},
4521 :     month = {April},
4522 :     note = {Operative Neurosurgery Supplement 2},
4523 :     doi = {10.1227/01.NEU.0000204726.00088.6D},
4524 :     file = {nimskyNS06ImplementationOfFiberTractNavigation.pdf:nimskyNS06ImplementationOfFiberTractNavigation.pdf:PDF},
4525 :     keywords = {neurosurgery},
4526 :     owner = {gk},
4527 :     timestamp = {2008.01.21}
4528 :     }
4529 :    
4530 :     @ARTICLE{GLK:Nimsky2005,
4531 :     author = {Christopher Nimsky and Oliver Ganslandt and Peter Hastreiter and
4532 :     Ruopeng Wang and Thomas Benner and A. Gregory Sorensen and Rudolf
4533 :     Fahlbusch},
4534 :     title = {Preoperative and Intraoperative Diffusion Tensor Imaging-Based Fiber
4535 :     Tracking in Glioma Surgery},
4536 :     journal = {Neurosurgery},
4537 :     year = {2005},
4538 :     volume = {56},
4539 :     pages = {130--138},
4540 :     number = {1},
4541 :     file = {nimskyNS05PreoperativeAndIntraoperativeDiffusionTensorImagingBasedFiberTrackingInGliomaSurgery.pdf:nimskyNS05PreoperativeAndIntraoperativeDiffusionTensorImagingBasedFiberTrackingInGliomaSurgery.pdf:PDF},
4542 :     keywords = {neurosurgery},
4543 :     owner = {gk},
4544 :     timestamp = {2007.09.19}
4545 :     }
4546 :    
4547 :     @ARTICLE{GLK:Nimsky2005a,
4548 :     author = {Christopher Nimsky and Oliver Ganslandt and Peter Hastreiter and
4549 :     Ruopeng Wang and Thomas Benner and A. Gregory Sorensen and Rudolf
4550 :     Fahlbusch},
4551 :     title = {Intraoperative Diffusion-Tensor {MR} Imaging: {S}hifting of White
4552 :     Matter Tracts during Neurosurgical Procedures-- {I}nitial Experience},
4553 :     journal = {Radiology},
4554 :     year = {2005},
4555 :     volume = {234},
4556 :     pages = {218--225},
4557 :     doi = {10.1148/radiol.2341031984},
4558 :     file = {nimsky05IntraoperativeDiffusionTensorMRImagingShiftingOfWhiteMatterTractsDuringNeurosurgicalProceduresInitialExperience.pdf:nimsky05IntraoperativeDiffusionTensorMRImagingShiftingOfWhiteMatterTractsDuringNeurosurgicalProceduresInitialExperience.pdf:PDF},
4559 :     keywords = {tumor neurosurgery},
4560 :     owner = {gk},
4561 :     timestamp = {2008.11.12}
4562 :     }
4563 :    
4564 :     @ARTICLE{GLK:Nimsky2006,
4565 :     author = {Christopher Nimsky and Oliver Ganslandt and Dorit Merhofa and A.
4566 :     Gregory Sorensen and Rudolf Fahlbusch},
4567 :    <