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Revision 233 - (download) (as text) (annotate)
Thu Aug 5 18:01:53 2010 UTC (8 years, 11 months ago) by jhr
File size: 265023 byte(s)
  A Didirot whitepaper based on the December 2009 NSF proposal
% This file was created with JabRef 2.4.2.
% Encoding: ASCII

@STRING{AJNR = {American Journal of Neuroradiology}}

@STRING{ANYAS = {Annals of the New York Academy of Sciences}}

@STRING{CGnA = {IEEE Computer Graphics and Applications}}

@STRING{CVPR = {Proceedings CVPR}}

@STRING{CVPR-long = {Proceedings IEEE Computer Vision and Pattern Recognition (CVPR)}}

@STRING{IJCV = {International Journal of Computer Vision}}

@STRING{INRIA = {Institut National de Recharche en Informatique et en Automatique}}

@STRING{IPMI = {Proceedings IPMI}}

@STRING{IPMI-long = {Proceedings Information Processing in Medical Imaging (IPMI)}}

@STRING{ISBI = {Proceedings ISBI}}

@STRING{ISBI-long = {Proceedings IEEE International Symposium on Biomedical Imaging (ISBI)}}

@STRING{ISMRM = {Proceedings ISMRM}}

@STRING{ISMRM-long = {Proceedings International Society for Magnetic Resonance in Medicine
	(ISMRM)}}

@STRING{JMIV = {Journal of Mathematical Imaging and Vision}}

@STRING{JMR = {Journal of Magnetic Resonance}}

@STRING{JMR-B = {Journal of Magnetic Resonance, Series B}}

@STRING{JMRI = {Journal of Magnetic Resonance Imaging}}

@STRING{MedIA = {Medical Image Analysis}}

@STRING{MICCAI = {Proceedings MICCAI}}

@STRING{MICCAI-long = {International Conference on Medical Image Computing and Computer-Assisted
	Intervention (MICCAI)}}

@STRING{MRM = {Magnetic Resonance in Medicine}}

@STRING{NI = {NeuroImage}}

@STRING{NMRB = {Nuclear Magnetic Resonance in Biomedicine}}

@STRING{PAMI = {IEEE Transactions on Pattern Analysis and Machine Intelligence}}

@STRING{PNAS = {Proc. National Academy of Sciences}}

@STRING{SIGGRAPH = {Computer Graphics (Proc. ACM SIGGRAPH)}}

@STRING{SimVis = {Proceedings Simulation und Visualisierung (SimVis)}}

@STRING{TIP = {IEEE Trans. on Image Processing}}

@STRING{TMI = {IEEE Trans. on Medical Imaging}}

@STRING{TOG = {ACM Trans. on Graphics}}

@STRING{TVCG = {IEEE Trans. on Visualization and Computer Graphics}}

@STRING{VIS = {Proc. IEEE Visualization}}

@STRING{WSCG = {Winter School of Computer Graphics}}

@ARTICLE{GLK:Ozarslan2005,
  author = {Evren {\"O}zarslan and Baba C. Vemuri and Thomas H. Mareci},
  title = {Generalized Scalar Measures for Diffusion MRI Using Trace, Variance,
	and Entropy},
  journal = MRM,
  year = {2005},
  volume = {53},
  pages = {866--876},
  file = {ozarslanMRM05GeneralizedScalarMeasuresForDiffusionMRIUsingTraceVarianceAndEntropy.pdf:ozarslanMRM05GeneralizedScalarMeasuresForDiffusionMRIUsingTraceVarianceAndEntropy.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:Ozarslan2007,
  author = {Evren \"{O}zarslan and Uri Nevo and Peter J. Basser},
  title = {Anisotropy Induced by Macroscopic Boundaries: {S}urface-Normal Mapping
	using Diffusion-Weighted Imaging},
  journal = {Biophysical Journal},
  year = {2007},
  volume = {0},
  pages = {0},
  doi = {10.1529/biophysj.107.124081},
  file = {ozarslan07AnisotropyInducedByMacroscopicBoundaries.pdf:ozarslan07AnisotropyInducedByMacroscopicBoundaries.pdf:PDF},
  keywords = {physics},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Akers2004,
  author = {David Akers and Anthony Sherbondy and Rachel Mackenzie and Robert
	Dougherty and Brian Wandell},
  title = {Exploration of the Brain's White Matter Pathways with Dynamic Queries},
  booktitle = VIS # { 2004},
  year = {2004},
  pages = {377--384},
  month = {October},
  file = {akersVIS04ExplorationOfTheBrainsWhiteMatterPathwaysWithDynamicQueries.pdf:akersVIS04ExplorationOfTheBrainsWhiteMatterPathwaysWithDynamicQueries.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:Akiba2007,
  author = {Hiroshi Akiba and Kwan-Liu Ma},
  title = {A Tri-Space Visualization Interface for Analyzing Time-Varying Multivariate
	Volume Data},
  booktitle = {Proc. Eurographics/IEEE-VGTC Symp. on Visualization},
  year = {2007},
  pages = {115--122},
  doi = {10.2312/VisSym/EuroVis07/115-122},
  file = {akiba07ATriSpaceVisualizationInterfaceForAnalyzingTimeVaryingMultivariateVolumeData.pdf:akiba07ATriSpaceVisualizationInterfaceForAnalyzingTimeVaryingMultivariateVolumeData.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:Aldroubi1999,
  author = {Akram Aldroubi and Peter Basser},
  title = {Reconstruction of vector and tensor fields from sampled discrete
	data},
  journal = {Contemporary Mathematics},
  year = {1999},
  volume = {247},
  pages = {1--15},
  file = {aldroubi99ReconstructionOfVectorAndTensorFieldsFromSampledDiscreteData.pdf:aldroubi99ReconstructionOfVectorAndTensorFieldsFromSampledDiscreteData.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Alexa2003,
  author = {Marc Alexa and Johannes Behr and Daniel Cohen-Or and Shachar Fleishman
	and David Levin and Claudio T Silva},
  title = {Computing and Rendering Point Set Surfaces},
  journal = TVCG,
  year = {2003},
  volume = {9},
  pages = {3--15},
  number = {1},
  month = {Jan},
  file = {alexaTVCG03ComputingAndRenderingPointSetSurfaces.pdf:alexaTVCG03ComputingAndRenderingPointSetSurfaces.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:aalexanderMRM00,
  author = {A L Alexander and K Hasan and G Kindlmann and D L Parker and J S
	Tsurada},
  title = {A Geometric Analysis of Diffusion Tensor Measurements of the Human
	Brain},
  journal = MRM,
  year = {2000},
  volume = {44},
  pages = {283--291},
  file = {aalexanderMRM00GeometricAnalysisOfDTMeasurementsOfTheHumanBrain.pdf:aalexanderMRM00GeometricAnalysisOfDTMeasurementsOfTheHumanBrain.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:aalexanderMRM01,
  author = {Andrew L. Alexander and Khader M. Hasan and Mariana Lazar and Jay
	S. Tsuruda and Dennis L. Parker},
  title = {Analysis of Partial Volume Effects in Diffusion-Tensor {MRI}},
  journal = MRM,
  year = {2001},
  volume = {45},
  pages = {770--780},
  file = {aalexanderMRM01AnalysisOfPartialVolumeEffectsInDTMRI.pdf:aalexanderMRM01AnalysisOfPartialVolumeEffectsInDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:alexanderCPVR99,
  author = {Daniel Alexander and James Gee and Ruzena Bajcsy},
  title = {Elastic Matching of Diffusion Tensor {MRI}s},
  booktitle = {CVPR},
  year = {1999},
  pages = {1244--1249},
  file = {alexanderCVPR99ElasticMatchingOfDiffusionTensorMRIs.pdf:alexanderCVPR99ElasticMatchingOfDiffusionTensorMRIs.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:dalexanderBMVC99,
  author = {Daniel Alexander and James Gee and Ruzena Bajcsy},
  title = {Similarity Measures for Matching Diffusion Tensor Images},
  booktitle = {Proceedings British Machine Vision Conference (BMVC)},
  year = {1999},
  pages = {93--102},
  address = {Nottingham, Great Britain},
  month = {September},
  file = {alexanderBMVC99SimilarityMeasuresForMatchingDiffusionTensorImages.pdf:alexanderBMVC99SimilarityMeasuresForMatchingDiffusionTensorImages.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Alexander2005,
  author = {Daniel C. Alexander and Gareth J. Barker},
  title = {Optimal imaging parameters for fiber-orientation estimation in diffusion
	{MRI}},
  journal = NI,
  year = {2005},
  volume = {27},
  pages = {357--367},
  number = {2},
  month = {Aug},
  doi = {10.1016/j.neuroimage.2005.04.008},
  owner = {gk},
  timestamp = {2008.07.15}
}

@ARTICLE{GLK:dalexanderMRM02,
  author = {D C Alexander and G J Barker and S R Arridge},
  title = {Detection and Modeling of Non-Gaussian Apparent Diffusion Coefficients
	Profiles in Human Brain Data},
  journal = MRM,
  year = {2002},
  volume = {48},
  pages = {331--340},
  file = {dcalexanderMRM02DetectionAndModelingOfNonGaussianApparentDiffusionCoefficientsProfiles_.pdf:dcalexanderMRM02DetectionAndModelingOfNonGaussianApparentDiffusionCoefficientsProfiles_.pdf:PDF},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:dalexander01,
  author = {D C Alexander and C Pierpaoli and P J Basser and J C Gee},
  title = {Spatial Transformations on Diffusion Tensor Magnetic Resonance Images},
  journal = TMI,
  year = {2001},
  volume = {20},
  pages = {1131--1139},
  number = {11},
  month = {November},
  file = {dAlexanderTMI01SpatialTransformationsOfDTMRI.pdf:dAlexanderTMI01SpatialTransformationsOfDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Amenta2004,
  author = {Nina Amenta and Yong Joo Kil},
  title = {Defining point-set surfaces},
  booktitle = SIGGRAPH # { 2004},
  year = {2004},
  pages = {264--270},
  file = {amentaSIGGRAPH04DefiningPointSetSurfaces.pdf:amentaSIGGRAPH04DefiningPointSetSurfaces.pdf:PDF},
  journal = {Computer Graphics},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:anderson01,
  author = {Adam W. Anderson},
  title = {Theoretical Analysis of the Effects of Noise on Diffusion Tensor
	Imaging},
  journal = MRM,
  year = {2001},
  volume = {46},
  pages = {1174--1188},
  file = {andersonMRM01TheoreticalAnalysisOfTheEffectsOfNoiseOnDTI.pdf:andersonMRM01TheoreticalAnalysisOfTheEffectsOfNoiseOnDTI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:Arsigny2006,
  author = {Vincent Arsigny and Pierre Fillard and Xavier Pennec and Nicholas
	Ayache},
  title = {Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite
	Matrices},
  journal = {SIAM Journal on Matrix Analysis and Applications},
  year = {2006},
  volume = {29},
  pages = {328--347},
  note = {In press.},
  comment = {ftp://ftp-sop.inria.fr/epidaure/Publications/Arsigny/arsigny_siam_tensors.pdf},
  file = {arsignySIAM06GeometricMeansInANovelVectorSpaceStructureOnSymmetricPositiveDefiniteMatrices.pdf:arsignySIAM06GeometricMeansInANovelVectorSpaceStructureOnSymmetricPositiveDefiniteMatrices.pdf:PDF},
  keywords = {DT-{MRI}, Tensors, Riemannian geometry, Lie groups, interpolation,
	Log-Euclidean metrics },
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:arsignyMRM06,
  author = {Vincent Arsigny and Pierre Fillard and Xavier Pennec and Nicholas
	Ayache},
  title = {{L}og-{E}uclidean Metrics for Fast and Simple Calculus on Diffusion
	Tensors},
  journal = MRM,
  year = {2006},
  volume = {56},
  pages = {411--421},
  number = {2},
  month = {August},
  file = {arsignyMRM06LogEuclideanMetricsForFastAndSimpleCalculusOnDiffusionTensors.pdf:arsignyMRM06LogEuclideanMetricsForFastAndSimpleCalculusOnDiffusionTensors.pdf:PDF},
  owner = {gk},
  review = {DT as covariance
	
	
	swelling
	
	
	proud to point out that tensors are vectors},
  timestamp = {2007.07.16}
}

@INPROCEEDINGS{GLK:Aylward1996,
  author = {Stephen Aylward and Elizabeth Bullitt and Stephen Pizer and David
	Eberly},
  title = {Intensity Ridge and Widths for Tubular Object Segmentation and Description},
  booktitle = {Proc. Workshop on Mathematical Methods in Biomedical Image Analysis
	(MMBIA)},
  year = {1996},
  pages = {131--138},
  comment = {for raster scan of same document, without font glitches, see aylward96IntensityRidgeAndWidthsForTubularObjectSegmentationAndDescription.pdf},
  doi = {10.1109/MMBIA.1996.534065},
  file = {aylward96IntensityRidgeAndWidthsForTubularObjectSegmentationAndDescription2.pdf:aylward96IntensityRidgeAndWidthsForTubularObjectSegmentationAndDescription2.pdf:PDF},
  owner = {gk},
  review = {Seems to say that they go in two steps- first finding cores at a fixed
	scale, and then traversing scales (at detected location) to get the
	right scale},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Aylward2002,
  author = {Stephen R. Aylward and Elizabeth Bullitt},
  title = {Initialization, Noise, Singularities, and Scale in Height Ridge Traversal
	for Tubular Object Centerline Extraction},
  journal = TMI,
  year = {2002},
  volume = {21},
  pages = {61-75},
  number = {2},
  month = {Feb},
  doi = {10.1109/42.993126},
  file = {aylwardTMI02InitializationNoiseSingularitiesAndScaleInHeightRidgeTraversalForTubularObjectCenterlineExtraction.pdf:aylwardTMI02InitializationNoiseSingularitiesAndScaleInHeightRidgeTraversalForTubularObjectCenterlineExtraction.pdf:PDF},
  keywords = {ridges, scale-space},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Bahn1999,
  author = {Mark M. Bahn},
  title = {A Linear Relationship Exists among Brain Diffusion Eigenvalues Measured
	by Diffusion Tensor Magnetic Resonance Imaging},
  journal = JMR,
  year = {1999},
  volume = {137},
  pages = {33--38},
  file = {bahnJMR99ALinearRelationshipExistsAmongBrainDiffusionEigenvaluesMeasuredByDTMRI.pdf:bahnJMR99ALinearRelationshipExistsAmongBrainDiffusionEigenvaluesMeasuredByDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Bahn1999a,
  author = {Mark M. Bahn},
  title = {Invariant and Orthonormal Scalar Measures Derived from Magnetic Resonance
	Diffusion Tensor Imaging},
  journal = JMR,
  year = {1999},
  volume = {141},
  pages = {68--77},
  comment = {RHS of Eq [A5] is missing factor sqrt(3/2). Eq [C7] is statement of
	how eigenvalues can be sorted "without the use of logical operations
	or the need to order the eigenvalues"},
  file = {bahnJMR99InvariantAndOrthogonalScalarMeasuresDerivedFromMRDTI.pdf:bahnJMR99InvariantAndOrthogonalScalarMeasuresDerivedFromMRDTI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Bahn1999b,
  author = {Mark M. Bahn},
  title = {Comparison of Scalar Measures Used in Magnetic Resonance Diffusion
	Tensor Imaging},
  journal = JMR,
  year = {1999},
  volume = {139},
  pages = {1--7},
  number = {1},
  file = {bahnJMR99ComparisonOfScalarMeasuresUsedInMagneticResonanceDiffusionTensorImaging.pdf:bahnJMR99ComparisonOfScalarMeasuresUsedInMagneticResonanceDiffusionTensorImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.08.02}
}

@INPROCEEDINGS{GLK:Bajcsy1987,
  author = {R Bajcsy and F Solina},
  title = {Three dimensional object representation revisited},
  booktitle = {Proc. 1st Intl. Conference on Computer Vision},
  year = {1987},
  pages = {231--240},
  address = {London, England},
  publisher = {IEEE},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:Banks1994,
  author = {David C. Banks},
  title = {Illumination in Diverse Codimensions},
  booktitle = SIGGRAPH # { 1994},
  year = {1994},
  volume = {28},
  pages = {327-334},
  publisher = {Addison Wesley},
  file = {banksSIGGRAPH94IlluminationInDiverseCodimensions.pdf:banksSIGGRAPH94IlluminationInDiverseCodimensions.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Bard1974,
  author = {J Bard and I Lauder},
  title = {How well does {T}uring's Theory of Morphogenesis work?},
  journal = {Journal of Theoretical Biology},
  year = {1974},
  volume = {45},
  pages = {501--531},
  number = {2},
  month = {June},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Barmpoutis2007,
  author = {Angelos Barmpoutis and Baba C. Vemuri and Timothy M. Shepherd and
	John R. Forder},
  title = {Tensor Splines for Interpolation and Approximation of {DT-MRI} With
	Applications to Segmentation of Isolated Rat Hippocampi},
  journal = TMI,
  year = {2007},
  volume = {26},
  pages = {1537--1546},
  number = {11},
  month = {Nov},
  doi = {10.1109/TMI.2007.903195},
  file = {barmpoutisTMI07TensorSplinesForInterpolationAndApproximationOfDTMRIWithApplicationsToSegmentationOfIsolatedRatHippocampi.pdf:barmpoutisTMI07TensorSplinesForInterpolationAndApproximationOfDTMRIWithApplicationsToSegmentationOfIsolatedRatHippocampi.pdf:PDF},
  owner = {gk},
  timestamp = {2008.07.02}
}

@ARTICLE{GLK:Barr1981,
  author = {A Barr},
  title = {Superquadrics and angle-preserving transformations},
  journal = CGnA,
  year = {1981},
  volume = {18},
  pages = {11--23},
  number = {1},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:Barr1989,
  author = {A H Barr},
  title = {The {E}instein Summation Notation: {I}ntroduction and Extensions},
  booktitle = {ACM SIGGRAPH 1989 Course Notes \#30: {T}opics in Physically Based
	Modeling},
  year = {1989},
  pages = {J1--J12},
  file = {barrXXEinsteinSummationNotation.pdf:barrXXEinsteinSummationNotation.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Basser1994,
  author = {PJ Basser and J Mattiello and D LeBihan},
  title = {{MR} Diffusion Tensor Spectroscopy and Imaging},
  journal = {Biophysics Journal},
  year = {1994},
  volume = {66},
  pages = {259--267},
  number = {1},
  file = {basser94MRDiffusionTensorSpectroscopyAndImaging.pdf:basser94MRDiffusionTensorSpectroscopyAndImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:Basser1998,
  author = {P J Basser},
  title = {Fiber-tractography via Diffusion Tensor {MRI} ({DT-MRI})},
  booktitle = ISMRM # { 1998},
  year = {1998},
  pages = {1226},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Basser1997,
  author = {P J Basser},
  title = {New Histological and Physiological Stains Derived from Diffusion-Tensor
	{MR} Images},
  journal = ANYAS,
  year = {1997},
  volume = {820},
  pages = {123--138},
  file = {basser97NewHistologicalAndPhysiologicalStainsFromDTMRI.pdf:basser97NewHistologicalAndPhysiologicalStainsFromDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Basser1995,
  author = {Peter J. Basser},
  title = {Inferring Microstructural Features and the Physiological State of
	Tissues from Diffusion-Weighted Images},
  journal = NMRB,
  year = {1995},
  volume = {8},
  pages = {333--344},
  file = {basserNMRB95InferringMicrostructuralFeaturesAndThePhysiologicalStateOfTissuesFromDWI.pdf:basserNMRB95InferringMicrostructuralFeaturesAndThePhysiologicalStateOfTissuesFromDWI.pdf:PDF},
  keywords = {tensor},
  owner = {gk},
  review = {definition of FA in eq (30) is too big by a factor of sqrt(3/2)},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Basser2002,
  author = {Peter J. Basser and Derek K. Jones},
  title = {Diffusion-tensor {MRI}: theory, experimental design and data analysis
	- a technical review},
  journal = NMRB,
  year = {2002},
  volume = {15},
  pages = {456--467},
  doi = {10.1002/nbm.783},
  file = {basserNMRB02DTMRITheoryExperimentalDesignAndDataAnalysis-review.pdf:basserNMRB02DTMRITheoryExperimentalDesignAndDataAnalysis-review.pdf:PDF},
  keywords = {tensor},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Basser1994a,
  author = {P J Basser and J Mattiello and D LeBihan},
  title = {Estimation of the Effective Self-diffusion Tensor from the {NMR}
	Spin-echo},
  journal = JMR-B,
  year = {1994},
  volume = {103},
  pages = {247--254},
  number = {3},
  file = {basserJMR94EstimationOfTheEffectiveSelf-DiffusionTensorFromTheNMRSpinEcho.pdf:basserJMR94EstimationOfTheEffectiveSelf-DiffusionTensorFromTheNMRSpinEcho.pdf:PDF},
  keywords = {tensor},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:BasserSP07,
  author = {Peter J. Basser and Sinisa Pajevic},
  title = {Spectral Decomposition of a 4th-order Covariance Tensor: {A}pplications
	to Diffusion Tensor {MRI}},
  journal = {Signal Processing},
  year = {2007},
  volume = {87},
  pages = {220--236},
  file = {basserSP07SpectralDecompositionOfA4thOrderCovarianceTensorApplicationsToDiffusionTensorMRI.pdf:basserSP07SpectralDecompositionOfA4thOrderCovarianceTensorApplicationsToDiffusionTensorMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:BasserTMI03,
  author = {P J Basser and S Pajevic},
  title = {A Normal Distribution for Tensor-Valued Random Variables: {A}pplications
	to Diffusion Tensor {MRI}},
  journal = TMI,
  year = {2003},
  volume = {22},
  pages = {785--794},
  number = {7},
  month = {July},
  file = {basserTMI03ANormalDistributionForTensorValuedRandomVariables.pdf:basserTMI03ANormalDistributionForTensorValuedRandomVariables.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:BasserMRM00,
  author = {Peter J. Basser and Sinisa Pajevic and Carlo Pierpaoli and Jeffrey
	Duda and Akram Aldroubi},
  title = {In Vivo Fiber Tractograpy Using {DT-MRI} Data},
  journal = MRM,
  year = {2000},
  volume = {44},
  pages = {625--632},
  file = {basserMRM00InVivoFiberTractographyUsingDTMRIdata.pdf:basserMRM00InVivoFiberTractographyUsingDTMRIdata.pdf:PDF},
  keywords = {tensor},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Basser1996,
  author = {P J Basser and C Pierpaoli},
  title = {Microstructural and Physiological Features of Tissues Elucidated
	by Quantitative-Diffusion-Tensor {MRI}},
  journal = JMR-B,
  year = {1996},
  volume = {111},
  pages = {209--219},
  file = {basserJMR96MicrostructuralAndPhysiologicalFeaturesOfTissuesElucidatedByQuantitativeDTMRI.pdf:basserJMR96MicrostructuralAndPhysiologicalFeaturesOfTissuesElucidatedByQuantitativeDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.07}
}

@ARTICLE{GLK:Batchelor2006,
  author = {P. G. Batchelor and F Calamante and J.-D. Tournier and D. Atkinson
	and D. L. G. Hill and A. Connelly},
  title = {Quantification of the shape of fiber tracts},
  journal = MRM,
  year = {2006},
  volume = {55},
  pages = {894--903},
  number = {4},
  file = {batchelorMRM06QuantificationOfTheShapeOfFiberTracts.pdf:batchelorMRM06QuantificationOfTheShapeOfFiberTracts.pdf:PDF},
  owner = {gk},
  timestamp = {2007.08.02}
}

@ARTICLE{GLK:batchelorMRM05,
  author = {P. G. Batchelor and M. Moakher and D. Atkinson and F. Calamante and
	A. Connelly},
  title = {A Rigorous Framework for Diffusion Tensor Calculus},
  journal = MRM,
  year = {2005},
  volume = {53},
  pages = {221--225},
  number = {1},
  month = {January},
  file = {batchelorMRM05ARigorousFrameworkForDiffusionTensorCalculus.pdf:batchelorMRM05ARigorousFrameworkForDiffusionTensorCalculus.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@INPROCEEDINGS{GLK:Bauer2002,
  author = {Dirk Bauer and Ronald Peikert},
  title = {Vortex Tracking in Scale-Space},
  booktitle = {Proc. IEEE TVCG/EG Symposium on Visualization},
  year = {2002},
  pages = {140--147},
  file = {bauerVISSYM02VortexTrackingInScaleSpace.pdf:bauerVISSYM02VortexTrackingInScaleSpace.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  review = {references as example of previous work on scale-space in vector vis:
	
	U. Diewald, T. Preusser and M. Rumpf. Anisotropic Diffusion in Vector
	Field Visualization on Euclidean Domains and Surfaces. In IEEE Transactions
	on Visualization and Computer Graphics, pp. 139-149, Apr.- Jun. 2000.
	
	
	
	talks about scale-space axioms, and apparently some proof from Florack
	[3], but doesn't mention 
	
	
	concerned about linear features extracted via parallel vector operator
	
	
	given the use of unstructured grids, uses heat diffusion simulation
	to get at larger scales
	
	
	honestly didn't see the content on tracking features in scale space-
	it seemed to be more: look at what features remain after we blur
	the crap out of the data},
  timestamp = {2008.03.23}
}

@ARTICLE{GLK:Beaulieu2002,
  author = {C Beaulieu},
  title = {The basis of anisotropic water diffusion in the nervous system -
	{A} technical review},
  journal = NMRB,
  year = {2002},
  volume = {15},
  pages = {435--455},
  file = {beaulieuNMRB02TheBasisOfAnisotropicWaterDiffusionInTheNervousSystem.pdf:beaulieuNMRB02TheBasisOfAnisotropicWaterDiffusionInTheNervousSystem.pdf:PDF},
  keywords = {biology, diffusion},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Behrens2007,
  author = {T. E. J. Behrens and H. Johansen Berg and S. Jbabdi and M. F. S.
	Rushworth and M. W. Woolricha},
  title = {Probabilistic diffusion tractography with multiple fibre orientations:
	{W}hat can we gain?},
  journal = NI,
  year = {2007},
  volume = {34},
  pages = {144--155},
  number = {1},
  month = {January},
  doi = {10.1016/j.neuroimage.2006.09.018},
  file = {behrensNeuroImage07ProbabilisticDiffusionTractographyWithMultipleFiberOrientationsWhatCanWeGain.pdf:behrensNeuroImage07ProbabilisticDiffusionTractographyWithMultipleFiberOrientationsWhatCanWeGain.pdf:PDF},
  keywords = {qazi},
  owner = {gk},
  timestamp = {2007.09.19}
}

@ARTICLE{GLK:Bello2008,
  author = {Lorenzo Bello and Anna Gambini and Antonella Castellano and Giorgio
	Carrabba and Francesco Acerbi and Enrica Fava and Carlo Giussani
	and Marcello Cadioli and Valeria Blasi and Alessandra Casarotti and
	Costanza Papagno and Arun K. Gupta and Sergio Gaini and Giuseppe
	Scotti and Andrea Falini},
  title = {Motor and language {DTI} Fiber Tracking combined with intraoperative
	subcortical mapping for surgical removal of gliomas},
  journal = NI,
  year = {2008},
  volume = {39},
  pages = {369--382},
  number = {1},
  month = {Jan.},
  file = {belloNI08MotorAndLanguageDTIFiberTrackingCombinedWithIntraoperativeSubcorticalMappingForSurgicalRemovalOfGliomas.pdf:belloNI08MotorAndLanguageDTIFiberTrackingCombinedWithIntraoperativeSubcorticalMappingForSurgicalRemovalOfGliomas.pdf:PDF},
  keywords = {neurosurgery tumor},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Benedetti2007,
  author = {Beatrice Benedetti and Marco Rovaris and Elda Judica and Giovanni
	Donadoni and Gianfranco Ciboddo and Massimo Filippi},
  title = {Assessing {"}occult{"} cervical cord damage in patients with neuropsychiatric
	systemic lupus erythematosus using diffusion tensor {MRI}},
  journal = {Journal of Neurology, Neurosurgery and Psychiatry},
  year = {2007},
  volume = {78},
  pages = {893--895},
  doi = {10.1136/jnnp.2006.110262},
  file = {benedettiJNNP07AssessingOccultCervicalCordDamageInPatientsWithNeuropsychiatricSystemicLupusErythematosusUsingDiffusionTensorMRI.pdf:benedettiJNNP07AssessingOccultCervicalCordDamageInPatientsWithNeuropsychiatricSystemicLupusErythematosusUsingDiffusionTensorMRI.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@INPROCEEDINGS{GLK:Bergmann2006,
  author = {{\O}rjan Bergmann and Gordon Kindlmann and Arvid Lundervold and Carl-Fredrik
	Westin},
  title = {Diffusion k-tensor estimation from {Q}-ball imaging using discretized
	principal axes},
  booktitle = MICCAI # { 2006},
  year = {2006},
  series = {Lecture Notes in Computer Science 4191},
  pages = {268--275},
  address = {Copenhagen, Denmark},
  month = {October},
  file = {bergmannMICCAI06.pdf:bergmannMICCAI06.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.07}
}

@INPROCEEDINGS{GLK:Bergmann2007,
  author = {{\O}rjan Bergmann and Gordon Kindlmann and Sharon Peled and Carl-Fredrik
	Westin},
  title = {Two-Tensor Fiber Tractography},
  booktitle = {Proc. IEEE Intl. Symposium on Biomedical Imaging (ISBI)},
  year = {2007},
  pages = {796--799},
  file = {bergmannISBI07.pdf:bergmannISBI07.pdf:PDF},
  owner = {gk},
  timestamp = {2007.12.23}
}

@ARTICLE{GLK:Beyer2007,
  author = {Johanna Beyer and Markus Hadwiger and Stefan Wolfsberger and Katja
	B{\"u}hler},
  title = {High-Quality Multimodal Volume Rendering for Preoperative Planning
	of Neurosurgical Interventions},
  journal = TVCG,
  year = {2007},
  volume = {13},
  pages = {1696--1703},
  number = {6},
  file = {beyerVIS07HighQualityMultimodalVolumeRenderingForPreoperativePlanningOfNeurosurgicalInterventions.pdf:beyerVIS07HighQualityMultimodalVolumeRenderingForPreoperativePlanningOfNeurosurgicalInterventions.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@INPROCEEDINGS{GLK:bigun87,
  author = {J. Big{\"u}n and G. H. Granlund},
  title = {Optimal Orientation Detection of Linear Symmetry},
  booktitle = {Proc. IEEE 1st Intl. Conference on Computer Vision},
  year = {1987},
  pages = {433-438},
  address = {London, Great Britain},
  month = {June},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Blaas2007,
  author = {Jorik Blaas and Charl P. Botha and Charles Majoie and Aart Nederveen
	and Frans M. Vos and Frits H. Post},
  title = {Interactive Visualization of Fused {fMRI} and {DTI} for Planning
	Brain Tumor Resections},
  booktitle = {Proc. SPIE Medical Imaging 2007},
  year = {2007},
  editor = {Kevin R. Cleary and Michael I. Miga},
  volume = {6509},
  file = {blaas07InteractiveVisualizationOfFusedFMRIandDTIforPlanningBrainTumorResections.pdf:blaas07InteractiveVisualizationOfFusedFMRIandDTIforPlanningBrainTumorResections.pdf:PDF},
  keywords = {neurosurgery},
  owner = {gk},
  timestamp = {2008.05.02}
}

@INPROCEEDINGS{GLK:Blaas2005,
  author = {Jorik Blaas and Charl P. Botha and Bart Peters and Frans M. Vos and
	Frits H. Post},
  title = {Fast and Reproducible Fiber Bundle Selection in {DTI} Visualization},
  booktitle = VIS,
  year = {2005},
  pages = {59--64},
  doi = {10.1109/VISUAL.2005.1532778},
  file = {blaasVIS05FastAndReproducibleFiberBundleSelectionInDTIVisualization.pdf:blaasVIS05FastAndReproducibleFiberBundleSelectionInDTIVisualization.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@INPROCEEDINGS{GLK:Blaas2007a,
  author = {Jorik Blaas and Charl P. Botha and Frits H. Post},
  title = {Interactive visualization of multi-field medical data using linked
	physical and feature-space views},
  booktitle = {Proc. Eurographics/IEEE VGTC Symp. on Visualization},
  year = {2007},
  editor = {Ken Museth and Anders Ynnerman and Torsten M\"{o}ller},
  pages = {123--130},
  file = {blaas07InteractiveVisualizationOfMultiFieldMedicalDataUsingLinkedPhysicalAndFeatureSpaceViews.pdf:blaas07InteractiveVisualizationOfMultiFieldMedicalDataUsingLinkedPhysicalAndFeatureSpaceViews.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:Bogdanova2007,
  author = {Iva Bogdanova and Xavier Bresson and Jean-Philippe Thiran and Pierre
	Vandergheynst},
  title = {Scale Space Analysis and Active Contours for Omnidirectional Images},
  journal = TIP,
  year = {2007},
  volume = {16},
  pages = {1888--1901},
  number = {7},
  month = {July},
  doi = {10.1109/TIP.2007.899008},
  file = {bogdanovaTIP07ScaleSpaceAnalysisAndActiveContoursForOmnidirectionalImages.pdf:bogdanovaTIP07ScaleSpaceAnalysisAndActiveContoursForOmnidirectionalImages.pdf:PDF},
  keywords = {contours, scale-space},
  owner = {gk},
  timestamp = {2008.03.22}
}

@TECHREPORT{GLK:Bossen1996a,
  author = {Frank Bossen},
  title = {Anisotropic Mesh Generation with Particles},
  institution = {School of Computer Science, Carnegie Mellon University},
  year = {1996},
  number = {CMU-CS-96-13},
  month = {May},
  file = {bossenMS96AnisotropicMeshGenerationWithParticles.pdf:bossenMS96AnisotropicMeshGenerationWithParticles.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Bossen1996,
  author = {Frank J Bossen and Paul S Heckbert},
  title = {A Pliant Method for Anisotropic Mesh Generation},
  booktitle = {Proc. 5th Intl. Meshing Roundtable},
  year = {1996},
  pages = {63--74},
  file = {bossen96APliantMethodForAnisotropicMeshGeneration.pdf:bossen96APliantMethodForAnisotropicMeshGeneration.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Botha2008,
  author = {C. P. Botha and F. H. Post},
  title = {Hybrid scheduling in the {DeVIDE} dataflow visualisation environment},
  booktitle = {Proc. of Simulation and Visualization},
  year = {2008},
  editor = {H. Hauser and S. Strassburger and H. Theisel},
  pages = {309--322},
  publisher = {SCS Publishing House Erlangen},
  file = {botha2008HybridSchedulingInTheDeVIDEDataflowVisualizationEnvironment.pdf:botha2008HybridSchedulingInTheDeVIDEDataflowVisualizationEnvironment.pdf:PDF},
  owner = {gk},
  timestamp = {2008.07.03}
}

@ARTICLE{GLK:Bouix2007,
  author = {Sylvain Bouix and Marcos Martin-Fernandez and Lida Ungar and Motoaki
	Nakamura and Min-Seong Koo and Robert W. McCarley and Martha E. Shenton},
  title = {On evaluating brain tissue classifiers without a ground truth},
  journal = NI,
  year = {2007},
  volume = {36},
  pages = {1207--1224},
  number = {4},
  owner = {gk},
  timestamp = {2008.05.03}
}

@BOOK{GLK:Bourne92,
  title = {Vector Analysis and Cartesian Tensors},
  publisher = {CRC Press},
  year = {1992},
  author = {D E Bourne and P C Kendall},
  edition = {3rd},
  owner = {gk},
  timestamp = {2007.07.07}
}

@ARTICLE{GLK:Bresson2006,
  author = {Xavier Bresson and Pierre Vandergheynst and Jean-Philippe Thiran},
  title = {Multiscale Active Contours},
  journal = IJCV,
  year = {2006},
  volume = {70},
  pages = {197--211},
  number = {3},
  doi = {10.1007/s11263-006-7462-3},
  file = {bresson06MultiscaleActiveContours.pdf:bresson06MultiscaleActiveContours.pdf:PDF},
  keywords = {contours},
  owner = {gk},
  timestamp = {2008.03.22}
}

@INPROCEEDINGS{GLK:Broersen2005,
  author = {Alexander Broersen and Robert van Liere},
  title = {Transfer Functions for Imaging Spectroscopy Data using Principal
	Component Analysis},
  booktitle = {Proc. Eurographics/IEEE VGTC Symp. on Visualization},
  year = {2005},
  pages = {117--123},
  file = {broersen05TransferFunctionsForImagingSpectroscopyDataUsingPCA.pdf:broersen05TransferFunctionsForImagingSpectroscopyDataUsingPCA.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@INPROCEEDINGS{GLK:Broersen2005a,
  author = {Alexander Broersen and Robert van Liere and Ron M.A. Heeren},
  title = {Comparing three {PCA}-based methods for the 3D visualization of imaging
	spectroscopy data},
  booktitle = {Visualization, Imaging, and Image Processing (Proc. 5th IAESTED Intl.
	Conf.)},
  year = {2005},
  editor = {J. J. Villanueva},
  address = {Benidorm, Spain},
  file = {broersen05ComparingThreePCABasedMethodsForThe3DVisualizationOfImagingSpectroscopyData.pdf:broersen05ComparingThreePCABasedMethodsForThe3DVisualizationOfImagingSpectroscopyData.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Bruckner2006,
  author = {Stefan Bruckner and S{\"o}ren Grimm and Armin Kanitsar and Eduard
	Gr{\"o}ller},
  title = {Illustrative Context-Preserving Exploration of Volume Data},
  journal = TVCG,
  year = {2006},
  volume = {12},
  pages = {1559--1569},
  number = {6},
  file = {brucknerTVCG06IllustrativeContextPreservingExplorationOfVolumeData.pdf:brucknerTVCG06IllustrativeContextPreservingExplorationOfVolumeData.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21},
  url = {http://www.cg.tuwien.ac.at/research/publications/2006/bruckner-2006-ICE/}
}

@ARTICLE{GLK:Burgeth2007,
  author = {S Burgeth and S Didas and L Florack and J Weickert},
  title = {A generic approach to diffusion filtering of matrix-fields},
  journal = {Computing},
  year = {2007},
  volume = {81},
  pages = {179--197},
  number = {2--3},
  month = {Nov},
  file = {:Users/gk/lit/pdf/burgeth07AGenericApproachToDiffusionFilteringOfMatrixFields.pdf:PDF},
  owner = {gk},
  timestamp = {2009.07.28}
}

@ARTICLE{GLK:Busking2007,
  author = {S Busking and A Vilanova Bartroli and J J van Wijk},
  title = {Particle-based non-photorealistic volume visualization},
  journal = {The Visual Computer},
  year = {2007},
  volume = {24},
  pages = {335--346},
  abstract = {Non-photorealistic techniques are usually applied to produce stylistic
	renderings. In visualization, these techniques are often able to
	simplify data, producing clearer images than traditional visualization
	methods. We investigate the use of particle systems for visualizing
	volume datasets using non-photorealistic techniques. In our VolumeFlies
	framework, user-selectable rules affect particles to produce a variety
	of illustrative styles in a unified way. The techniques presented
	do not require the generation of explicit intermediary surfaces.},
  owner = {gk},
  timestamp = {2009.06.28}
}

@MISC{GLK:Byers1998,
  author = {Nina Byers},
  title = {E. {N}oether's Discovery of the Deep Connection Between Symmetries
	and Conservation Laws},
  year = {1998},
  note = {\url{http://arxiv.org/abs/physics/9807044v2}},
  abstract = {Emmy Noether proved two deep theorems, and their converses, on the
	connection between symmetries and conservation laws. Because these
	theorems are not in the mainstream of her scholarly work, which was
	the development of modern abstract algebra, it is of some historical
	interest to examine how she came to make these discoveries. The present
	paper is an historical account of the circumstances in which she
	discovered and proved these theorems which physicists refer to collectively
	as Noether's Theorem. The work was done soon after Hilbert's discovery
	of the variational principle which gives the field equations of general
	relativity. The failure of local energy conservation in the general
	theory was a problem that concerned people at that time, among them
	David Hilbert, Felix Klein, and Albert Einstein. Noether's theorems
	solved this problem. With her characteristically deep insight and
	thorough analysis, in solving that problem she discovered very general
	theorems that have profoundly influenced modern physics.},
  file = {:Users/gk/lit/pdf/byers98NoethersDiscoveryOfTheDeepConnectionBetweenSymmetriesAndConservationLaws.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.27},
  url = {http://arxiv.org/abs/physics/9807044v2}
}

@ARTICLE{GLK:Caan2006,
  author = {M. W. A. Caan and K. A. Vermeer and L. J. van Vliet and C. B. L.
	M. Majoie and B. D. Peters G. J. den Heeten and F.M. Vos},
  title = {Shaving diffusion tensor images in discriminant analysis: {A} study
	into schizophrenia},
  journal = MedIA,
  year = {2006},
  volume = {10},
  pages = {841--849},
  file = {caanMedIA06ShavingDiffusionTensorImagesInDiscriminantAnalysisAStudyIntoSchizophrenia.pdf:caanMedIA06ShavingDiffusionTensorImagesInDiscriminantAnalysisAStudyIntoSchizophrenia.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Canny1986,
  author = {J. Canny},
  title = {A Computational Approach To Edge Detection},
  journal = PAMI,
  year = {1986},
  volume = {8},
  pages = {679--714},
  number = {6},
  month = {Nov},
  owner = {gk},
  timestamp = {2009.12.17}
}

@BOOK{GLK:docarmo92,
  title = {Riemannian Geometry},
  publisher = {Birkh{\"a}user},
  year = {1992},
  author = {Manfredo Perdigao do~Carmo},
  address = {Boston, Mass},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Caselles1997,
  author = {Vicent Caselles and Ron Kimmel and Guillermo Sapiro},
  title = {Geodesic Active Contours},
  journal = IJCV,
  year = {1997},
  volume = {22},
  pages = {61--79},
  number = {1},
  file = {caselles97GeodesicActiveContours.pdf:caselles97GeodesicActiveContours.pdf:PDF},
  keywords = {contours},
  owner = {gk},
  timestamp = {2008.03.25}
}

@ARTICLE{GLK:Casimir1945,
  author = {H B G Casimir},
  title = {On {O}nsager's Principle of Microscopic Reversibility},
  journal = {Reviews of Modern Physics},
  year = {1945},
  volume = {17},
  pages = {343--350},
  number = {2,3},
  month = {April--July},
  doi = {10.1103/RevModPhys.17.343},
  file = {casimir45OnOnsagersPrincipleOfMicroscopicReversibility.pdf:casimir45OnOnsagersPrincipleOfMicroscopicReversibility.pdf:PDF},
  keywords = {physics},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:castano-moragaMICCAI04,
  author = {Carlos A. Casta{\~n}o-Moraga and Miguel A. Rodrigues-Florido and
	Luis Alvarez and Carl-Fredrik Westin and Juan Ruiz-Alzola},
  title = {Anisotropic Interpolation of {DT-MRI}},
  booktitle = MICCAI # { 2004},
  year = {2004},
  series = {Lecture Notes in Computer Science},
  address = {Rennes - Saint Malo, France},
  month = {September},
  file = {castano-moragaMICCAI04AnisotropicInterpolationOfDT-MRI.pdf:castano-moragaMICCAI04AnisotropicInterpolationOfDT-MRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Catani2002,
  author = {Marco Catani and Robert J. Howard and Sinisa Pajevic and Derek K.
	Jones},
  title = {Virtual in Vivo Interactive Dissection of White Matter Fasciculi
	in the Human Brain},
  journal = NI,
  year = {2002},
  volume = {17},
  pages = {77--94},
  number = {1},
  month = {September},
  doi = {10.1006/nimg.2002.1136},
  file = {cataniNI02VirtualInVivoInteractiveDissectionOfWhiteMatterFasciculiInTheHumanBrain.pdf:cataniNI02VirtualInVivoInteractiveDissectionOfWhiteMatterFasciculiInTheHumanBrain.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Catani2003,
  author = {Marco Catani and Derek K. Jones and Rosario Donato and Dominic H.
	ffytche},
  title = {Occipito-temporal connections in the human brain},
  journal = {Brain},
  year = {2003},
  volume = {126},
  pages = {2093--2107},
  number = {9},
  month = {September},
  doi = {10.1093/brain/awg203},
  file = {cataniBrain03OccipitoTemporalConnectionsInTheHumanBrain.pdf:cataniBrain03OccipitoTemporalConnectionsInTheHumanBrain.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.18}
}

@INPROCEEDINGS{GLK:Cates2007,
  author = {J. Cates and P. T. Fletcher and M. Styner and M. Shenton and R. Whitaker},
  title = {Shape modeling and analysis with entropy-based particle systems},
  booktitle = {Proc. Information Processing in Medical Imaging (IPMI)},
  year = {2007},
  volume = {4584},
  series = {Lecture Notes in Computer Science},
  pages = {333},
  publisher = {Springer},
  owner = {gk},
  timestamp = {2009.12.16}
}

@INPROCEEDINGS{GLK:Cates2006,
  author = {Joshua Cates and Miriah Meyer and P Thomas Fletcher and Ross Whitaker},
  title = {Entropy-Based Particle Systems for Shape Correspondence},
  booktitle = {Proc. Workshop on Mathematical Foundations of Computational Anatomy
	(MICCAI)},
  year = {2006},
  pages = {90--99},
  file = {catesMICCAI06EntropyBasedParticleSystemsForShapeCorrespondence.pdf:catesMICCAI06EntropyBasedParticleSystemsForShapeCorrespondence.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:chang07,
  author = {Lin-Ching Chang and Cheng Guan Koay and Carlo Pierpaoli and Peter
	J. Basser},
  title = {Variance of Estimated {DTI}-Derived Parameters via First-Order Perturbation
	Methods},
  journal = MRM,
  year = {2007},
  volume = {57},
  pages = {141--149},
  file = {changMRM07VarianceOfEstimatedDTIDerivedParametersViaFirstOrderPerturbationMethods.pdf:changMRM07VarianceOfEstimatedDTIDerivedParametersViaFirstOrderPerturbationMethods.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:Chefd'hotel2004,
  author = {C Chefd'hotel and D Tschumperl\'{e} and R Deriche and O Faugeras},
  title = {Regularizing Flows for Constrained Matrix-Valued Images},
  journal = JMIV,
  year = {2004},
  volume = {20},
  pages = {147--162},
  number = {1--2},
  file = {chefdhotelJMIV04RegularizingFlowsForConstrainedMatrixValuedImages.pdf:chefdhotelJMIV04RegularizingFlowsForConstrainedMatrixValuedImages.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.26}
}

@INPROCEEDINGS{GLK:chef02,
  author = {C. Chefd'hotel and D. Tschumperl{\'e} and R. Deriche and O. Faugeras},
  title = {Constrained Flows of Matrix-Valued Functions: Application to Diffusion
	Tensor Regularization},
  booktitle = {Proceedings 7th European Conference on Computer Vision-Part I (ECCV
	'02)},
  year = {2002},
  pages = {251--265},
  address = {London, UK},
  publisher = {Springer-Verlag},
  file = {chefdhotel02ConstrainedFlowsOfMatrixValuedFunctionsApplicationToDiffusionTensorRegularization.pdf:chefdhotel02ConstrainedFlowsOfMatrixValuedFunctionsApplicationToDiffusionTensorRegularization.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Clark2003,
  author = {Chris A. Clark and Thomas R. Barrick and Mary M. Murphy and B. Anthony
	Bell},
  title = {White matter fiber tracking in patients with space-occupying lesions
	of the brain: a new technique for neurosurgical planning?},
  journal = NI,
  year = {2003},
  volume = {20},
  pages = {1601--1608},
  number = {3},
  month = {Nov},
  doi = {doi:10.1016/j.neuroimage.2003.07.022},
  file = {clarkNI03WhiteMatterFiberTrackingInPatientsWithSpaceOccupyingLesionsOfTheBrainANewTechniqueForNeurosurgicalPlanning.pdf:clarkNI03WhiteMatterFiberTrackingInPatientsWithSpaceOccupyingLesionsOfTheBrainANewTechniqueForNeurosurgicalPlanning.pdf:PDF},
  keywords = {tumor neurosurgery},
  owner = {gk},
  timestamp = {2008.11.12}
}

@ARTICLE{GLK:conturo99,
  author = {Thomas E. Conturo and Nicolas F. Lori and Thomas S. Cull and Erbil
	Akbudak and Abraham Z. Snyder and Joshua S. Shimony and Robert C.
	McKinstry and Harold Burton and Marcus E. Raichle},
  title = {Tracking neuronal fiber pathways in the living human brain},
  journal = PNAS,
  year = {1999},
  volume = {96},
  pages = {10422--10427},
  month = {August},
  file = {conturoPNAS99TrackingNeuronalFiberPathwaysInTheLivingHumanBrain.pdf:conturoPNAS99TrackingNeuronalFiberPathwaysInTheLivingHumanBrain.pdf:PDF},
  keywords = {tractography},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:conturo96,
  author = {T E~Conturo and R C~McKinstry and E~Akbudak and B H~Robinson},
  title = {Encoding of Anisotropic Diffusion with Tetrahedral Gradients: {A}
	General Mathematical Diffusion Formalism and Experimental Results},
  journal = MRM,
  year = {1996},
  volume = {35},
  pages = {399--412},
  number = {3},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Cook2005,
  author = {P A Cook and H Zhang and B Avants and P Yushkevich and D C Alexander
	and J C Gee and O Ciccarelli and A J Thompson},
  title = {An Automated Approach to Connectivity-based Partitioning of Brain
	Structures},
  booktitle = MICCAI # { 2005},
  year = {2005},
  volume = {8},
  series = {Lecture Notes in Computer Science},
  pages = {164--171},
  publisher = {Springer-Verlag},
  abstract = {We present an automated approach to the problem of connectivity-based
	partitioning of brain structures using diffusion imaging. White-matter
	fibres connect different areas of the brain, allowing them to interact
	with each other. Diffusion-tensor MRI measures the orientation of
	white-matter fibres in vivo, allowing us to perform connectivity-based
	partitioning non-invasively. Our new approach leverages atlas-based
	segmentation to automate anatomical labeling of the cortex. White-matter
	connectivities are inferred using a probabilistic tractography algorithm
	that models crossing pathways explicitly. The method is demonstrated
	with the partitioning of the corpus callosum of eight healthy sub
	jects.},
  file = {cookMiccai05AnAutomatedApproachToConnectivityBasedPartitioningOfBrainStructures.pdf:cookMiccai05AnAutomatedApproachToConnectivityBasedPartitioningOfBrainStructures.pdf:PDF},
  keywords = {diffusion, tractography, two-tensor},
  owner = {gk},
  timestamp = {2007.07.06}
}

@INPROCEEDINGS{GLK:Corouge2005,
  author = {I Corouge and P T Fletcher and S Joshi and J H Gilmore and G Gerig},
  title = {Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor
	{MRI} Analysis},
  booktitle = MICCAI # { 2005},
  year = {2005},
  pages = {131--139},
  file = {corougeMICCAI05FiberTractOrientedStatisticsForQuantitativeDiffusionTensorMRIAnalysis.pdf:corougeMICCAI05FiberTractOrientedStatisticsForQuantitativeDiffusionTensorMRIAnalysis.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Corouge2006,
  author = {I Corouge and P T Fletcher and S Joshi and S Gouttard and G Gerig},
  title = {Fiber tract-oriented statistics for quantitative diffusion tensor
	{MRI} Analysis},
  journal = MedIA,
  year = {2006},
  volume = {10},
  pages = {786--798},
  number = {5},
  file = {Corouge-DTI-Original-MedIA-2006.pdf:Corouge-DTI-Original-MedIA-2006.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Correa2006,
  author = {Carlos D. Correa and Deborah Silver and Min Chen},
  title = {Feature Aligned Volume Manipulation for Illustration and Visualization},
  journal = TVCG,
  year = {2006},
  volume = {12},
  pages = {1069--1076},
  number = {5},
  month = {September},
  doi = {10.1109/TVCG.2006.144},
  file = {correaTVCG06FeatureAlignedVolumeManipulationForIllustrationAndVisualization.pdf:correaTVCG06FeatureAlignedVolumeManipulationForIllustrationAndVisualization.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@BOOK{GLK:Crank,
  title = {The Mathematics of Diffusion},
  publisher = {Oxford University Press},
  year = {1975},
  author = {J Crank},
  address = {Oxford, England},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:criscione00,
  author = {J C Criscione and J D Humphrey and A S Douglas and W C Hunter},
  title = {An Invariant Basis for Natural Strain which Yields Orthogonal Stress
	Response Terms in Isotropic Hyperelasticity},
  journal = {Journal of Mechanics and Physics of Solids},
  year = {2000},
  volume = {48},
  pages = {2445--2465},
  file = {criscione00AnInvariantBasisForNaturalStrainWhichYieldsOrthogonalStressResponse.pdf:criscione00AnInvariantBasisForNaturalStrainWhichYieldsOrthogonalStressResponse.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Crossno1999,
  author = {Patricia Crossno and Edward Angel},
  title = {Visual debugging of visualization software: {A} case study for particle
	systems},
  booktitle = VIS,
  year = {1999},
  pages = {417--420},
  file = {crossnoVIS99VisualDebuggingOfVisualizationSoftwareACaseStudyForParticleSystems.pdf:crossnoVIS99VisualDebuggingOfVisualizationSoftwareACaseStudyForParticleSystems.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.26}
}

@INPROCEEDINGS{GLK:Crossno1997,
  author = {Patricia Crossno and Edward Angel},
  title = {Isosurface Extraction Using Particle Systems},
  booktitle = VIS,
  year = {1997},
  pages = {495--498},
  file = {crossnoVIS97IsosurfaceExtractionUsingParticleSystems.pdf:crossnoVIS97IsosurfaceExtractionUsingParticleSystems.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  review = {very much based on witkin+heckbert (gaussian, split/kill,},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:Cs'ebfalvi2001,
  author = {Bal{\'a}zs Cs{\'e}bfalvi and Lukas Mroz and Helwig Hauser and Andreas
	K{\"o}nig and Eduard Gr{\"o}ller},
  title = {Fast Visualization of Object Contours by Non-Photorealistic Volume
	Rendering},
  journal = {Computer Graphics Forum},
  year = {2001},
  volume = {20},
  pages = {452--460},
  number = {3},
  doi = {10.1111/1467-8659.00538},
  file = {csebfalviEG01FastVisualizationOfObjectContoursByNonPhotorealisticVolumeRendering.pdf:csebfalviEG01FastVisualizationOfObjectContoursByNonPhotorealisticVolumeRendering.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Damon1999,
  author = {James Damon},
  title = {Properties of Ridges and Cores for Two-Dimensional Images},
  journal = JMIV,
  year = {1999},
  volume = {10},
  pages = {163--174},
  number = {4},
  month = {Dec},
  file = {damonJMIV99PropertiesOfRidgesAndCoresFor2DImages.pdf:damonJMIV99PropertiesOfRidgesAndCoresFor2DImages.pdf:PDF},
  keywords = {ridges, cores, scale-space},
  owner = {gk},
  timestamp = {2008.04.03}
}

@INPROCEEDINGS{GLK:dauguetMICCAI06,
  author = {Julien Dauguet and Sharon Peled and Vladimir Berezovskii and Thierry
	Delzescaux and Simon K. Warfield and Richard Born and Carl-Fredrik
	Westin},
  title = {{3D} Histological Reconstruction of Fiber Tracts and Direct Comparison
	with Diffusion Tensor {MRI} Tractography},
  booktitle = MICCAI # { 2006},
  year = {2006},
  series = {Lecture Notes in Computer Science 4190},
  pages = {109--116},
  address = {Copenhagen, Denmark},
  month = {October},
  file = {dauguetMICCAI063DHistologicalReconstructionOfFiberTractsAndDirectComparisonWithDiffusionTensorMRITractography.pdf:dauguetMICCAI063DHistologicalReconstructionOfFiberTractsAndDirectComparisonWithDiffusionTensorMRITractography.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Demiralp2006,
  author = {\c{C}a\u{g}atay Demiralp and Song Zhang and David F. Tate and Stephen
	Correia and David H. Laidlaw},
  title = {Connectivity-aware sectional visualization of {3D} {DTI} volumes
	using perceptual flat-torus coloring and edge rendering},
  booktitle = {Proceedings of Eurographics},
  year = {2006},
  editor = {D. W. Fellner and C. Hansen},
  file = {demiralpEG06ConnectivityAwareSectionalVisualizationOf3DDTIVolumesUsingPerceptualFlatTorusColoringAndEdgeRendering.pdf:demiralpEG06ConnectivityAwareSectionalVisualizationOf3DDTIVolumesUsingPerceptualFlatTorusColoringAndEdgeRendering.pdf:PDF},
  owner = {gk},
  review = {includes a notion of edge detection based on long-range connectivity},
  timestamp = {2008.07.15}
}

@ARTICLE{GLK:Descoteaux2006,
  author = {M Descoteaux and E Angelino and S Fitzgibbons and R Deriche},
  title = {Apparent Diffusion Coefficients from High Angular Resolution Diffusion
	Imaging: Estimation and Applications},
  journal = MRM,
  year = {2006},
  volume = {56},
  pages = {395--410},
  file = {descoteauxMRM06ApparentDiffusionCoefficientsFromHighAngularResolutionDiffusionImagingEstimationAndApplications.pdf:descoteauxMRM06ApparentDiffusionCoefficientsFromHighAngularResolutionDiffusionImagingEstimationAndApplications.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@INPROCEEDINGS{GLK:Descoteaux2007,
  author = {Maxime Descoteaux and Christophe Lenglet and Rachid Deriche},
  title = {Diffusion tensor sharpening improves white matter tractography},
  booktitle = {Proceedings of SPIE (Medical Imaging 2007: Image Processing)},
  year = {2007},
  volume = {6512},
  number = {1},
  pages = {65121J},
  publisher = {SPIE},
  note = {editor = Josien P. W. Pluim and Joseph M. Reinhardt},
  doi = {10.1117/12.708988},
  file = {descoteaux07DiffusionTensorSharpeningImprovesWhiteMatterTractography.pdf:descoteaux07DiffusionTensorSharpeningImprovesWhiteMatterTractography.pdf:PDF},
  owner = {gk},
  timestamp = {2007.11.12}
}

@ARTICLE{GLK:Diebel2006,
  author = {James R. Diebel and Sebastian Thrun and Michael Br\"{u}nig},
  title = {A {B}ayesian method for probable surface reconstruction and decimation},
  journal = {ACM Trans. on Graphics},
  year = {2006},
  volume = {25},
  pages = {39--59},
  number = {1},
  doi = {10.1145/1122501.1122504},
  file = {diebelTOG06ABayesianMethodForProbableSurfaceReconstructionAndDecimation.pdf:diebelTOG06ABayesianMethodForProbableSurfaceReconstructionAndDecimation.pdf:PDF},
  keywords = {Bayes},
  owner = {gk},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:Djurcilova2002,
  author = {Suzana Djurcilova and Kwansik Kima and Pierre Lermusiaux and Alex
	Pang},
  title = {Visualizing scalar volumetric data with uncertainty},
  journal = {Computers and Graphics},
  year = {2002},
  volume = {26},
  pages = {239--248},
  file = {djurcilov02VolumeRenderingDataWithUncertaintyInformation.pdf:djurcilov02VolumeRenderingDataWithUncertaintyInformation.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:Dougherty2005a,
  author = {Robert F. Dougherty and Michal Ben-Shachar and Roland Bammer and
	Alyssa A. Brewer and Brian A. Wandell},
  title = {Functional organization of human occipital-callosal fiber tracts},
  journal = PNAS,
  year = {2005},
  volume = {102},
  pages = {7350--7355},
  number = {20},
  month = {May},
  doi = {10.1073/pnas.0500003102},
  file = {doughertyPNAS05FunctionalOrganizationOfHumanOccipitalCallosalFiberTracts.pdf:doughertyPNAS05FunctionalOrganizationOfHumanOccipitalCallosalFiberTracts.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Dougherty2005,
  author = {R F Dougherty and M Ben-Shachar and G Deutsch and P Potanina and
	R Bammer and B A Wandell},
  title = {Occipital-{C}allosal Pathways in Children: {V}alidation and Atlas
	Development},
  journal = ANYAS,
  year = {2005},
  volume = {1064},
  pages = {98--112},
  file = {doughertyANYAS05OccipitalCallosalPathwaysInChildrenValidationAndAtlasDevelopment.pdf:doughertyANYAS05OccipitalCallosalPathwaysInChildrenValidationAndAtlasDevelopment.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.07.07}
}

@ARTICLE{GLK:drebin88,
  author = {RA Drebin and L Carpenter and P Hanrahan},
  title = {Volume Rendering},
  journal = {Computer Graphics},
  year = {1988},
  volume = {22},
  pages = {65--74},
  number = {4},
  booktitle = {Proceedings of ACM SIGGRAPH 88},
  owner = {gk},
  publisher = {Addison Wesley},
  timestamp = {2009.12.16}
}

@BOOK{GLK:dummitfoote,
  title = {Abstract Algebra},
  publisher = {Prentice-Hall, Inc.},
  year = {1991},
  author = {D S Dummit and R M Foote},
  address = {New Jersey},
  owner = {gk},
  timestamp = {2007.07.30}
}

@MISC{GLK:Eberly3x3Eigen2008,
  author = {David Eberly},
  title = {Eigensystems for 3~x~3 Symmetric Matrices (Revisited)},
  howpublished = {http://www.geometrictools.com/Documentation/EigenSymmetric3x3.pdf},
  month = {March},
  year = {2008},
  file = {eberly08EigenSymmetric3x3.pdf:eberly08EigenSymmetric3x3.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05},
  url = {http://www.geometrictools.com/Documentation/EigenSymmetric3x3.pdf}
}

@BOOK{GLK:Eberly1996,
  title = {Ridges in Image and Data Analysis},
  publisher = {Kluwer Academic Publishers},
  year = {1996},
  author = {D Eberly},
  file = {eberlyBOOK96RidgesInImageAndDataAnalysis.pdf:eberlyBOOK96RidgesInImageAndDataAnalysis.pdf:PDF},
  owner = {gk},
  review = {Eberly says that the JMIV 94 paper is subsumed by the book},
  timestamp = {2007.07.07}
}

@ARTICLE{GLK:Eberly1994,
  author = {D Eberly and R Gardner and B Morse and S Pizer},
  title = {Ridges for Image Analysis},
  journal = JMIV,
  year = {1994},
  volume = {4},
  pages = {353--373},
  number = {4},
  comment = {don't actually know if this is the PDF for this article; in any case
	Eberly says the content is subsumed by the book},
  doi = {10.1007/BF01262402},
  file = {eberly94RidgesForImageAnalysis.pdf:eberly94RidgesForImageAnalysis.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.07}
}

@INPROCEEDINGS{GLK:Eberly1994a,
  author = {David Eberly and Stephen M. Pizer},
  title = {Ridge flow models for image segmentation},
  booktitle = {In SPIE Proceedings on Mathematical Methods in Medical Imaging II},
  year = {1994},
  pages = {54--64},
  file = {:Users/gk/lit/pdf/eberly94ridgeflow.pdf:PDF},
  owner = {gk},
  timestamp = {2009.03.21}
}

@TECHREPORT{GLK:Eberly1993,
  author = {David Eberly and Stephen M Pizer},
  title = {Ridge flow models for image segmentation},
  institution = {University of North Carolina at Chapel Hill},
  year = {1993},
  number = {TR93-056},
  file = {eberlyTR93RidgeFlowModelsForImageSegmentation.pdf:eberlyTR93RidgeFlowModelsForImageSegmentation.pdf:PDF},
  keywords = {creases},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Ebert2000,
  author = {David Ebert and Penny Rheingans},
  title = {Volume Illustration: {N}on-Photorealistic Rendering of Volume Models},
  booktitle = VIS,
  year = {2000},
  pages = {195--202},
  file = {ebertVis00VolumeIllustrationNonPhotorealisticRenderingOfVolumeModels.pdf:ebertVis00VolumeIllustrationNonPhotorealisticRenderingOfVolumeModels.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Ellegod2006,
  author = {Jacob Ellegod and Chris C Hanstock and Christian Beaulieu},
  title = {Diffusion Tensor Spectroscopy ({DTS}) of Human Brain},
  journal = MRM,
  year = {2006},
  volume = {55},
  pages = {1--8},
  file = {ellegoodMRM06DiffusionTensorSpectroscopyOfHumanBrain.pdf:ellegoodMRM06DiffusionTensorSpectroscopyOfHumanBrain.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:Enders2005,
  author = {Frank Enders and Natascha Sauber and Dorit Merhof and Peter Hastreiter
	and Christopher Nimsky and Marc Stamminger},
  title = {Visualization of White Matter Tracts with Wrapped Streamlines},
  booktitle = VIS,
  year = {2005},
  pages = {51--58},
  file = {endersVIS05VisualizationOfWhiteMatterTractsWithWrappedStreamlines.pdf:endersVIS05VisualizationOfWhiteMatterTractsWithWrappedStreamlines.pdf:PDF},
  keywords = {tractography neurosurgery},
  owner = {gk},
  timestamp = {2008.11.12}
}

@ARTICLE{GLK:ennisMRM05,
  author = {Daniel B. Ennis and Gordon Kindlman and Ignacio Rodriguez and Patrick
	A. Helm and Elliot R. McVeigh},
  title = {Visualization of tensor fields using superquadric glyphs},
  journal = MRM,
  year = {2005},
  volume = {53},
  pages = {169--176},
  month = {January},
  file = {:Users/gk/lit/pdf/ennisMRM05VisualizationOfTensorFieldsUsingSuperquadricGlyphs.pdf:PDF},
  issue = {1},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Ennis2006,
  author = {D B Ennis and G Kindlmann},
  title = {Orthogonal tensor invariants and the analysis of diffusion tensor
	magnetic resonance images},
  journal = MRM,
  year = {2006},
  volume = {55},
  pages = {136--146},
  number = {1},
  file = {ennisMRM06OrthogonalTensorInvariantsAndTheAnalysisOfDTMRI.pdf:ennisMRM06OrthogonalTensorInvariantsAndTheAnalysisOfDTMRI.pdf:PDF},
  owner = {gk},
  review = {thomas schultz says Sept 17 2008
	
	
	Hi,
	
	
	sure - but it's really a minor thing, hidden in the formal proof,
	and it does not change the final result: In the MRM paper in Eq.
	[B26], the inverse of norm(A) is taken. In Eq. [B31], where [B26]
	is contracted with [B29], this inverse is neglected. That is, Eq.
	[B31] should really read
	
	
	sqrt(3/2)*(norm(A)^(-1) A:PHI - norm(A tilde) norm(A)^(-4) (A:A) )
	
	
	However, since this only changes the scaling, it does not affect the
	overall validity of the proof.},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Entezari2008,
  author = {Alireza Entezari and Dimitri Van DeVille and Torsten M\"{o}ller},
  title = {Practical Box Splines for Reconstruction on the Body Centered Cubic
	Lattice},
  journal = TVCG,
  year = {2008},
  volume = {14},
  pages = {313--328},
  number = {2},
  month = {March--April},
  doi = {10.1109/TVCG.2007.70429},
  file = {entezariTVCG08PracticalBoxSplinesForReconstructionOnTheBodyCenteredCubicLattice.pdf:entezariTVCG08PracticalBoxSplinesForReconstructionOnTheBodyCenteredCubicLattice.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:Entezari2006,
  author = {Alireza Entezari and Torsten M\"{o}ller},
  title = {Extensions of the {Z}wart-{P}owell Box Spline for Volumetric Data
	Reconstruction on the Cartesian Lattice},
  journal = TVCG,
  year = {2006},
  volume = {12},
  pages = {1337--1344},
  number = {5},
  month = {Sept--Oct},
  doi = {10.1109/TVCG.2006.141},
  file = {entezariTVCG06ExtensionsOfTheZwartPowellBoxSplineForVolumetricDataReconstructionOnTheCartesianLattice.pdf:entezariTVCG06ExtensionsOfTheZwartPowellBoxSplineForVolumetricDataReconstructionOnTheCartesianLattice.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@INPROCEEDINGS{GLK:Entezeri2004,
  author = {Alireza Entezeri and Ramsay Dyer and Torsten M\"{o}ller},
  title = {Linear and Cubic Box Splines for the Body Centered Cubic Lattice},
  booktitle = VIS,
  year = {2004},
  pages = {11--18},
  doi = {10.1109/VISUAL.2004.65},
  file = {entezariVIS04LinearAndCubicBoxSplinesForTheBodyCenteredCubicLattice.pdf:entezariVIS04LinearAndCubicBoxSplinesForTheBodyCenteredCubicLattice.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:feddernIJCV06,
  author = {C Feddern and J Weickert and B Burgeth and M Welk},
  title = {Curvature-Driven {PDE} Methods for Matrix-Valued Images},
  journal = IJCV,
  year = {2006},
  volume = {69},
  pages = {93-107},
  number = {1},
  month = {August},
  file = {feddernPP04CurvatureDrivenPDEMethodsForMatrixValuedImages.pdf:feddernPP04CurvatureDrivenPDEMethodsForMatrixValuedImages.pdf:PDF},
  owner = {gk},
  review = {Tom Schultz says that except for a practically insignificant problem,
	this ensures positive-definiteness.},
  timestamp = {2007.07.30}
}

@TECHREPORT{GLK:Felzenszwalb2004,
  author = {Pedro F. Felzenszwalb and Daniel P. Huttenlocher},
  title = {Distance Transforms of Sampled Functions},
  institution = {Cornell Computing and Information Science},
  year = {2004},
  number = {TR2004-1963},
  file = {:Users/gk/lit/pdf/felzenszwalbTR04DistanceTransformsOfSampledFunctions.pdf:PDF},
  owner = {gk},
  timestamp = {2009.10.05}
}

@ARTICLE{GLK:Fergus2006,
  author = {Rob Fergus and Barun Singh and Aaron Hertzmann and Sam T. Roweis
	and William T. Freeman},
  title = {Removing Camera Shake From A Single Photograph},
  journal = {ACM Trans. on Graphics (Proc. SIGGRAPH)},
  year = {2006},
  volume = {25},
  pages = {787--794},
  number = {3},
  month = {July},
  doi = {10.1145/1141911.1141956},
  file = {fergusSIGGRAPH06RemovingCameraShakeFromASinglePhotograph.pdf:fergusSIGGRAPH06RemovingCameraShakeFromASinglePhotograph.pdf:PDF},
  keywords = {bayes},
  owner = {gk},
  timestamp = {2008.04.05}
}

@TECHREPORT{GLK:Fidrich1996,
  author = {M{\'a}rta Fidrich},
  title = {Iso-surface Extraction in {4D} with Applications related to Scale
	Space},
  institution = INRIA # { (Sophia-Antipolis)},
  year = {1996},
  number = {2833},
  month = {March},
  file = {fidrichTR96IsosurfaceExtractionIn4DWithApplicationsRelatedToScaleSpace.pdf:fidrichTR96IsosurfaceExtractionIn4DWithApplicationsRelatedToScaleSpace.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:field05,
  author = {A S Field and Y-C Wu and A L Alexander},
  title = {Principal Diffusion Direction In Peritumoral Fiber Tracts},
  journal = {Annals of the New York Academy of Sciences},
  year = {2005},
  volume = {1064},
  pages = {193--201},
  file = {fieldANYAS05PrincipalDiffusionDirectionInPeritumoralFiberTracts.pdf:fieldANYAS05PrincipalDiffusionDirectionInPeritumoralFiberTracts.pdf:PDF},
  keywords = {neurosurgery},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Figueiredo1992,
  author = {Luiz Henrique de Figueiredo and Jonas de Miranda Gomes and Demetri
	Terzopoulos and Luiz Velho},
  title = {Physically-based methods for polygonization of implicit surfaces},
  booktitle = {Proc. Graphics Interface},
  year = {1992},
  pages = {250--257},
  file = {defigueiredo92PhysicallyBasedMethodsForPolygonizationOfImplicitSurfaces.pdf:defigueiredo92PhysicallyBasedMethodsForPolygonizationOfImplicitSurfaces.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  review = {actually, two methods for making meshes of implicit surfaces:
	
	
	either 1): for implicit function F and implicit surface F = 0, uses
	the gradient of |F| as a force field (or does he mean gradient of
	-|F|?) to move non-interacting particles onto surface, and then redistributes
	them using Turk91 (reaction diffusion!) or Szeliski&Tonneson&91 (oriented
	particles, lennard-jones).
	
	
	or 2): create a 3-D mesh of the volume containing the implicit surface,
	by moving vertices with a weird force field that pushes particles
	off the immediate surface, and also pulls far away particles towards
	the surface, and then, using a proto-marching cubes thing to polygonalize
	an approximation to the implicit surface
	
	
	interestingly, references a bunch of things (including marching cubes)
	as variants of "Allgower's method"},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:fillardISBI06,
  author = {P Fillard and V Arsigny and X Pennec and N Ayache},
  title = {Clinical {DT-MRI} estimation, smoothing and fiber tracking with {L}og-{E}uclidean
	metrics},
  booktitle = ISBI # { 2006},
  year = {2006},
  series = {LNCS},
  pages = {786--789},
  address = {Arlington, Virginia, USA},
  month = {April},
  file = {fillardISBI06ClinicalDT-MRIEstimationSmoothingAndFiberTrackingWithLogEuclideanMetrics.pdf:fillardISBI06ClinicalDT-MRIEstimationSmoothingAndFiberTrackingWithLogEuclideanMetrics.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@INCOLLECTION{GLK:Fischler1987,
  author = {Martin A. Fischler and Robert C. Bolles},
  title = {Random sample consensus: {A} paradigm for model fitting with applications
	to image analysis and automated cartography},
  booktitle = {Readings in computer vision: issues, problems, principles, and paradigms},
  publisher = {Morgan Kaufmann Publishers Inc.},
  year = {1987},
  pages = {726--740},
  address = {San Francisco, CA, USA},
  file = {fischler81RandomSampleConsensusAParadigmForModelFittingWithApplicationsToImageAnalysisAndAutomatedCartography.pdf:fischler81RandomSampleConsensusAParadigmForModelFittingWithApplicationsToImageAnalysisAndAutomatedCartography.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@INPROCEEDINGS{GLK:Fleischer1995,
  author = {Kurt W. Fleischer and David H. Laidlaw and Bena L. Currin and Alan
	H. Barr},
  title = {Cellular texture generation},
  booktitle = {SIGGRAPH '95: Proceedings of the 22nd annual conference on Computer
	graphics and interactive techniques},
  year = {1995},
  pages = {239--248},
  doi = {10.1145/218380.218447},
  file = {fleischerSIGGRAPH95CellularTextureGeneration.pdf:fleischerSIGGRAPH95CellularTextureGeneration.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:Fletcher2007,
  author = {P. Thomas Fletcher and Sarang Joshi},
  title = {Riemannian geometry for the statistical analysis of diffusion tensor
	data},
  journal = {Signal Processing},
  year = {2007},
  volume = {87},
  pages = {250--262},
  doi = {10.1016/j.sigpro.2005.12.018},
  file = {fletcherSP07RiemannianGeometryForTheStatisticalAnalysisOfDiffusionTensorData.pdf:fletcherSP07RiemannianGeometryForTheStatisticalAnalysisOfDiffusionTensorData.pdf:PDF},
  owner = {gk},
  review = {Says he's the same as batchelor, which I say is same as Lenglet},
  timestamp = {2008.01.23}
}

@INPROCEEDINGS{GLK:Fletcher2004,
  author = {P. Thomas Fletcher and Sarang Joshi},
  title = {Principal Geodesic Analysis on Symmetric Spaces: Statistics of Diffusion
	Tensors},
  booktitle = {Proceedings ECCV 2004 Workshop on Computer Vision Approaches to Medical
	Image Analysis (CVAMIA)},
  year = {2004},
  volume = {31107},
  series = {LNCS},
  pages = {87--98},
  publisher = {Springer-Verlag},
  file = {fletcherXXPrincipalGeodesicAnalysisOnSymmetricSpacesStatisticsOfDiffusionTensors.pdf:fletcherXXPrincipalGeodesicAnalysisOnSymmetricSpacesStatisticsOfDiffusionTensors.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:Florack2001,
  author = {Luc Florack},
  title = {Non-Linear Scale-Spaces Isomorphic to the Linear Case with Applications
	to Scalar, Vector and Multispectral Images},
  journal = IJCV,
  year = {2001},
  volume = {15},
  pages = {39--53},
  number = {1--2},
  file = {florackIJCV01NonlinearScaleSpaceIsomorphicToTheLinearCaseWithApplicationsToScalarVectorAndMultispectralImages.pdf:florackIJCV01NonlinearScaleSpaceIsomorphicToTheLinearCaseWithApplicationsToScalarVectorAndMultispectralImages.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  review = {There's only half a page about non-scalar images, seems purely theoretical},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Florack1996,
  author = {Luc Florack and Bart ter Haar Romeny and Max Viergever and Jan Koenderink},
  title = {The {G}aussian Scale-Space Paradigm and the Multiscale Local Jet},
  journal = IJCV,
  year = {1996},
  volume = {18},
  pages = {61--75},
  number = {1},
  month = {April},
  file = {florack96TheGaussianScaleSpaceParadigmAndTheMultiscaleLocalJet.pdf:florack96TheGaussianScaleSpaceParadigmAndTheMultiscaleLocalJet.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  review = {I think this implicitly talks about sampling scale space with Hermite
	splines, but I can't be sure...},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Florack2000,
  author = {Luc Florack and Arjan Kuijper},
  title = {The Topological Structure of Scale-Space Images},
  journal = JMIV,
  year = {2000},
  volume = {12},
  pages = {65--79},
  number = {1},
  file = {florack00TheTopologicalStructureOfScaleSpaceImages.pdf:florack00TheTopologicalStructureOfScaleSpaceImages.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  review = {Bram Platel says that this is the paper that talks about interpolating/predicting
	the location of critical points between scales, but it says for experimental
	details see GLK:Kuijper1999},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Florack2008,
  author = {L. M. J. Florack and L. J. Astola},
  title = {A Multi-Resolution Framework for Diffusion Tensor Images},
  booktitle = {Proc. CVPR Workshop on Tensors in Image Processing and Computer Vision},
  year = {2008},
  pages = {1--7},
  month = {June},
  organization = {IEEE},
  comment = {editor = Aja~Fern{\'{a}}ndez, S. and de~Luis~Garcia, R.},
  file = {:Users/gk/lit/pdf/florack08AMultiResolutionFrameworkForDTI.pdf:PDF},
  owner = {gk},
  timestamp = {2009.07.03}
}

@ARTICLE{GLK:Florack1994,
  author = {L. M. J. Florack and B. M. ter Haar Romeny and J. J. Koenderink and
	M. A. Viergever},
  title = {Linear scale-space},
  journal = JMIV,
  year = {1994},
  volume = {4},
  pages = {325--351},
  number = {4},
  month = {December},
  file = {florack94LinearScaleSpace.pdf:florack94LinearScaleSpace.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.29}
}

@ARTICLE{GLK:Florack1992,
  author = {Luc M J Florack and Bart M ter Haar Romeny and Jan J Koenderink and
	Max A Viergever},
  title = {Scale and the differential structure of images},
  journal = {Image and Vision Computing},
  year = {1992},
  volume = {10},
  pages = {376--388},
  number = {6},
  note = {Special issue: Information Processing in Medical Imaging 1991},
  file = {florack92ScaleAndTheDifferentialStructureOfImages.pdf:florack92ScaleAndTheDifferentialStructureOfImages.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Frangi1999,
  author = {Alejandro F. Frangi and Wiro J. Niessen and Romhild M. Hoogeveen
	and Theo van Walsum and Max A. Viergever},
  title = {Model-Based Quantitation of 3-{D} Magnetic Resonance Angiographic
	Images},
  journal = TMI,
  year = {1999},
  volume = {18},
  pages = {946--956},
  number = {10},
  owner = {gk},
  timestamp = {2008.03.29}
}

@ARTICLE{GLK:Fridman2004,
  author = {Yonatan Fridman and Stephen M. Pizer and Stephen Aylward and Elizabeth
	Bullitt},
  title = {Extracting branching tubular object geometry via cores},
  journal = MedIA,
  year = {2004},
  volume = {8},
  pages = {169--176},
  number = {3},
  month = {Sept},
  file = {fridmanMEDIA04ExtractingBranchingTubularObjectGeometryViaCores.pdf:fridmanMEDIA04ExtractingBranchingTubularObjectGeometryViaCores.pdf:PDF},
  keywords = {cores},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Fritsch1994,
  author = {Daniel S. Fritsch and Stephen M. Pizer and Edward Chaney and Alan
	Liu and Suraj Raghavan and Tushar Shah},
  title = {Cores for Image Registration},
  booktitle = {Proc. SPIE Medical Imaging '94: Image Processing},
  year = {1994},
  volume = {2167},
  series = {128--142},
  month = {May},
  file = {fritsch94CoresForImageRegistration.pdf:fritsch94CoresForImageRegistration.pdf:PDF},
  keywords = {cores, registration},
  owner = {gk},
  timestamp = {2008.04.03}
}

@ARTICLE{GLK:Furst2002,
  author = {Jacob D. Furst and Stephen M. Pizer},
  title = {Optimal Parameter Height Ridges},
  journal = {Journal of Visual Communication and Image Representation},
  year = {2002},
  volume = {13},
  pages = {119--134},
  doi = {doi:10.1006/jvci.2001.0496},
  file = {furst02OptimalParameterHeightRidges.pdf:furst02OptimalParameterHeightRidges.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Furst2001,
  author = {J D Furst and S M Pizer},
  title = {Marching Ridges},
  booktitle = {Proc. 2001 IASTED Intl. Conference on Signal and Image Processing},
  year = {2001},
  pages = {22--26},
  file = {furst01MarchingRidges.pdf:furst01MarchingRidges.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Furst1998,
  author = {Jacob D. Furst and Stephen M. Pizer},
  title = {Marching Optimal-Parameter Ridges: an Algorithm to Extract Shape
	Loci in 3D Images},
  booktitle = MICCAI,
  year = {1998},
  volume = {1496},
  series = {Lecture Notes in Computer Science},
  pages = {780--787},
  file = {furstMICCAI98MarchingOptimalParameterRidgesAnAlgorithmToExtractShapeLociIn3DImages.pdf:furstMICCAI98MarchingOptimalParameterRidgesAnAlgorithmToExtractShapeLociIn3DImages.pdf:PDF},
  keywords = {creases},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Furst1996,
  author = {J D Furst and S M Pizer and D H Eberly},
  title = {Marching Cores: {A} Method for Extracting Cores from {3D} Medical
	Images},
  booktitle = {Proceedings of IEEE Workshop on Mathematical Methods in Biomedical
	Image Analysis},
  year = {1996},
  pages = {124--130},
  month = {June},
  doi = {10.1109/MMBIA.1996.534064},
  file = {furst96MarchingCores.pdf:furst96MarchingCores.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:forstner86,
  author = {W F{\"o}rstner},
  title = {A Feature Based Corresponding Algorithm for Image Matching},
  journal = {International Archive of Photogrammetry and Remote Sensing},
  year = {1986},
  volume = {26},
  pages = {150--166},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:forstner87,
  author = {W F{\"o}rstner and E G{\"u}lch},
  title = {A fast operator for detection and precise location of distinct points,
	corners and centres of cicular features},
  booktitle = {Proc. ISPRS Intercommission Conference on Fast Processing of Photogrammetric
	Data},
  year = {1987},
  pages = {281--305},
  address = {Interlaken, Switzerland},
  month = {June},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Gauch1993,
  author = {J M Gauch and S M Pizer},
  title = {Multiresolution Analysis of Ridges and Valleys in Grey-Scale Images},
  journal = PAMI,
  year = {1993},
  volume = {15},
  pages = {635--646},
  number = {6},
  month = {June},
  file = {gauchPAMI93MultiresolutionAnalysisOfRidgesAndValleysInGrayScaleImages.pdf:gauchPAMI93MultiresolutionAnalysisOfRidgesAndValleysInGrayScaleImages.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  review = {Raul says: 
	
	Gauch and Pizer proposed a multi-resolution analysis for ridge and
	
	valley lines by projecting the Hessian at different scales into the
	
	level curve tangents},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Golland1999,
  author = {Polina Golland and W. Eric L. Grimson and Ron Kikinis},
  title = {Statistical Shape Analysis Using Fixed Topology Skeletons: {C}orpus
	Callosum Study},
  booktitle = {Proc. 16th Intl. Conf. Information Processing in Medical Imaging
	(IPMI)},
  year = {1999},
  volume = {1613},
  series = {Lecture Notes In Computer Science},
  pages = {382--387},
  file = {gollandIMPI99StatisticalShapeAnalysisUsingFixedTopologySkeletonsCorpusCallosumStudy.pdf:gollandIMPI99StatisticalShapeAnalysisUsingFixedTopologySkeletonsCorpusCallosumStudy.pdf:PDF},
  keywords = {skeletons},
  owner = {gk},
  timestamp = {2008.04.05}
}

@BOOK{GLK:Gonzalez2002,
  title = {Digital Image Processing},
  publisher = {Addison-Wesley Publishing Company},
  year = {2002},
  author = {RC Gonzalez and RE Woods},
  address = {Reading, MA},
  edition = {2nd},
  comment = {chapter = "4.4": central differences},
  owner = {gk},
  timestamp = {2007.07.06}
}

@INPROCEEDINGS{GLK:Gooch1998,
  author = {Amy Gooch and Bruce Gooch and Peter Shirley and Elaine Cohen},
  title = {A Non-Photorealistic Lighting Model for Automatic Technical Illustration},
  booktitle = SIGGRAPH,
  year = {1998},
  pages = {447--452},
  doi = {10.1145/280814.280950},
  file = {goochSIGGRAPH98ANonPhotorealisticLightingModelForAutomaticTechnicalIllustration.pdf:goochSIGGRAPH98ANonPhotorealisticLightingModelForAutomaticTechnicalIllustration.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@INPROCEEDINGS{GLK:Goodlett2006,
  author = {C Goodlett and B Davis and R Jean and J H Gilmore and G Gerig},
  title = {Improved Correspondence for {DTI} Population Studies Via Unbiased
	Atlas Building},
  booktitle = MICCAI # { 2006},
  year = {2006},
  series = {Lecture Notes in Computer Science 4190},
  pages = {260--267},
  address = {Copenhagen, Denmark},
  month = {October},
  file = {goodlettMICCAI06ImprovedCorrespondanceForDTIPopulationStudiesViaUnbiasedAtlasBuilding.pdf:goodlettMICCAI06ImprovedCorrespondanceForDTIPopulationStudiesViaUnbiasedAtlasBuilding.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Gumhold2003,
  author = {Stefan Gumhold},
  title = {Splatting Illuminated Ellipsoids with Depth Correction},
  booktitle = {Proc. Vision Modeling and Visualization},
  year = {2003},
  pages = {245--252},
  month = {Nov.},
  file = {gumhold03SplattingIlluminatedEllipsoidsWithDepthCorrection.pdf:gumhold03SplattingIlluminatedEllipsoidsWithDepthCorrection.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@BOOK{GLK:Haar2003,
  title = {Front-End Vision and Multi-Scale Image Analysis},
  publisher = {Kluwer Academic Publishers},
  year = {2003},
  author = {B M ter~Haar~Romeny},
  volume = {27},
  series = {Computational Imaging and Vision},
  address = {Dordrecht, The Netherlands},
  owner = {gk},
  timestamp = {2007.07.06}
}

@INPROCEEDINGS{GLK:Hadwiger2003,
  author = {Markus Hadwiger and Christoph Berger and Helwig Hauser},
  title = {High-Quality Two-Level Volume Rendering of Segmented Data Sets on
	Consumer Graphics Hardware},
  booktitle = VIS,
  year = {2003},
  pages = {301--308},
  file = {hadwigerVIS03HighQualityTwoLevelVolumeRenderingOfSegmentedDataSetsOnConsumerGraphicsHardware.pdf:hadwigerVIS03HighQualityTwoLevelVolumeRenderingOfSegmentedDataSetsOnConsumerGraphicsHardware.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Hadwiger2005,
  author = {Markus Hadwiger and Christian Sigg and Henning Scharsach and Khatja
	B{\"u}hler and Markus Gross},
  title = {Real-Time Ray-Casting and Advanced Shading of Discrete Isosurfaces},
  journal = {Computer Graphics Forum (Proc. Eurographics)},
  year = {2005},
  volume = {24},
  pages = {303--312},
  number = {3},
  month = {September},
  file = {hadwigerEG05RealTimeRayCastingAndAdvancedShadingOfDiscreteIsosurfaces.pdf:hadwigerEG05RealTimeRayCastingAndAdvancedShadingOfDiscreteIsosurfaces.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.28}
}

@ARTICLE{GLK:Hagmann2008a,
  author = {Patric Hagmann and Leila Cammoun and Xavier Gigandet and Reto Meuli
	and Christopher J. Honey and Van J. Wedeen and Olaf Sporns},
  title = {Mapping the Structural Core of Human Cerebral Cortex},
  journal = {PLoS Biology},
  year = {2008},
  volume = {6},
  pages = {e159},
  number = {7},
  doi = {10.1371/journal.pbio.0060159},
  file = {:Users/gk/lit/pdf/hagmann08MappingTheStructuralCoreOfHumanCerebralCortex.pdf:PDF},
  owner = {gk},
  timestamp = {2009.04.25}
}

@INPROCEEDINGS{GLK:Hagmann2008,
  author = {P. Hagmann and X. Gigandet and R. Meuli and R. K\"{o}tter and O.
	Sporns and V. J. Wedeen},
  title = {Quantitative Validation of {MR} Tractography using the {CoCoMac}
	database},
  booktitle = {Proc. ISMRM},
  year = {2008},
  pages = {427},
  file = {:Users/gk/lit/pdf/hagmannISMRM08QuantitativeValidationOfMRTractographyUsingTheCoCoMacDatabase.pdf:PDF},
  owner = {gk},
  timestamp = {2009.04.25}
}

@ARTICLE{GLK:Haralick1983,
  author = {R M Haralick},
  title = {Ridges and Valleys on Digital Images},
  journal = {Computer Vision, Graphics, and Image Processing},
  year = {1983},
  volume = {22},
  pages = {28--38},
  owner = {gk},
  timestamp = {2007.07.07}
}

@INPROCEEDINGS{GLK:Hart2002,
  author = {John C. Hart and Ed Bachta and Wojciech Jarosz and Terry Fleury},
  title = {Using Particles to Sample and Control More Complex Implicit Surfaces},
  booktitle = {Proc. Shape Modeling and Applications (SMI)},
  year = {2002},
  month = {May},
  file = {hart02UsingParticlesToSampleAndControlMoreComplexImplicitSurfaces.pdf:hart02UsingParticlesToSampleAndControlMoreComplexImplicitSurfaces.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:hasan03,
  author = {K M Hasan and P A Narayana},
  title = {Computation of the Fractional Anisotropy and Mean Diffusivity Maps
	Without Tensor Decoding and Diagonalization: Theoretical Analysis
	and Validation},
  journal = MRM,
  year = {2003},
  volume = {50},
  pages = {589--598},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Hauser2001,
  author = {Helwig Hauser and Lukas Mroz and Gian Italo Bischi and M Edward Gr{\"o}ller},
  title = {Two-Level Volume Rendering},
  journal = TVCG,
  year = {2001},
  volume = {7},
  pages = {242--252},
  number = {3},
  month = {July--Sep},
  comment = {IEEEXplore},
  file = {hauserTVCG01TwoLevelVolumeRendering.pdf:hauserTVCG01TwoLevelVolumeRendering.pdf:PDF},
  owner = {gk},
  timestamp = {2009.01.13}
}

@INPROCEEDINGS{GLK:Hausner2001,
  author = {Alejo Hausner},
  title = {Simulating decorative mosaics},
  booktitle = {Proc. ACM SIGGRAPH},
  year = {2001},
  pages = {573--580},
  doi = {10.1145/383259.383327},
  file = {hausnerSIGGRAPH2001SimulatingDecorativeMosaics.pdf:hausnerSIGGRAPH2001SimulatingDecorativeMosaics.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.26}
}

@INPROCEEDINGS{GLK:Heckbert1997,
  author = {Paul Heckbert},
  title = {Fast Surface Particle Repulsion},
  booktitle = {ACM SIGGRAPH 1997 Course Notes (New Frontiers in Modeling and Texturing)},
  year = {1997},
  pages = {95--114},
  month = {August},
  file = {heckbertTR97FastSurfaceParticleRepulsion.pdf:heckbertTR97FastSurfaceParticleRepulsion.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:helm06,
  author = {P A Helm and L Younes and M F Beg and D B Ennis and C Leclercq and
	O P Faris and E McVeigh and D Kass and M I Miller and R L Winslow},
  title = {Evidence of structural remodeling in the dyssynchronous failing heart},
  journal = {Circulation Research},
  year = {2006},
  volume = {98},
  pages = {125--32},
  number = {1},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Helton2006,
  author = {K. J. Helton and N. S. Phillips and R. B. Khan and F.A. Boop and
	R.A. Sanford and P. Zou and C.S. Li and J.W. Langston and R.J. Ogg},
  title = {Diffusion Tensor Imaging of Tract Involvement in Children with Pontine
	Tumors},
  journal = AJNR,
  year = {2006},
  volume = {27},
  pages = {786--793},
  number = {4},
  month = {April},
  file = {heltonAJNR06DiffusionTensorImagingOfTractInvolvementInChildrenWithPontineTumors.pdf:heltonAJNR06DiffusionTensorImagingOfTractInvolvementInChildrenWithPontineTumors.pdf:PDF},
  keywords = {neurosurgery},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Henry2003,
  author = {Roland G. Henry and Joonmi Oh and Sarah J. Nelson and Daniel Pelletier},
  title = {Directional Diffusion in Relapsing-Remitting Multiple Sclerosis:
	A Possible In Vivo Signature of {W}allerian Degeneration},
  journal = JMRI,
  year = {2003},
  volume = {18},
  pages = {420--426},
  doi = {10.1002/jmri.10379},
  file = {henryJMRI03DirectionalDiffusionInRelapsingRemittingMultipleSclorosisAPossibleInVivoSignatureOfWallerianDegeneration.pdf:henryJMRI03DirectionalDiffusionInRelapsingRemittingMultipleSclorosisAPossibleInVivoSignatureOfWallerianDegeneration.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@ARTICLE{GLK:Hess2006,
  author = {Christopher P. Hess and Pratik Mukherjee and Eric T. Han and Duan
	Xu and Daniel B. Vigneron},
  title = {Q-Ball Reconstruction of Multimodal Fiber Orientations Using The
	Spherical Harmonic Basis},
  journal = MRM,
  year = {2006},
  volume = {56},
  pages = {104--117},
  doi = {10.1002/mrm.20931},
  file = {hessMRM06QBallReconstructionOfMultimodalFiberOrientationsUsingTheSphericalHarmonicBasis.pdf:hessMRM06QBallReconstructionOfMultimodalFiberOrientationsUsingTheSphericalHarmonicBasis.pdf:PDF},
  owner = {gk},
  timestamp = {2008.06.29}
}

@INBOOK{GLK:Hoffman,
  chapter = {3,8},
  title = {Linear Algebra},
  publisher = {Prentice-Hall, Inc.},
  year = {1971},
  author = {K Hoffman and R Kunze},
  address = {Englewood Cliffs, NJ},
  chapters = {3,8},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:hogg2004nsa,
  author = {James C. Hogg and Fanny Chu and Soraya Utokaparch and Ryan Woods
	and W. Mark Elliott and Liliana Buzatu and Ruben M. Cherniack and
	Robert M. Rogersa and Frank C. Sciurba and Harvey O. Coxson and Peter
	D. Par{'e}},
  title = {The nature of small-airway obstruction in chronic obstructive pulmonary
	disease},
  journal = {New England Journal of Medicine},
  year = {2004},
  volume = {350},
  pages = {2645--2653},
  number = {26},
  month = {June},
  file = {:Users/gk/lit/pdf/hogg04TheNatureOfSmallAirwayObstructionInCOPD.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.29}
}

@ARTICLE{GLK:Holodny2005,
  author = {Andrei I. Holodny and Richard Watts and Valeri N. Korneinko and Igor
	N. Pronin and Mikhail E. Zhukovskiy and Devang M. Gor and Aziz Ulug},
  title = {Diffusion Tensor Tractography of the Motor White Matter Tracts in
	Man: {C}urrent Controversies and Future Directions},
  journal = ANYAS,
  year = {2005},
  volume = {1064},
  pages = {88--97},
  month = {December},
  doi = {10.1196/annals.1340.016},
  file = {holodnyANYAS05DiffusionTensorTractographyOfTheMotorWhiteMatterTractsInMan.pdf:holodnyANYAS05DiffusionTensorTractographyOfTheMotorWhiteMatterTractsInMan.pdf:PDF},
  owner = {gk},
  timestamp = {2007.09.17}
}

@BOOK{GLK:holzapfel00,
  title = {Nonlinear Solid Mechanics},
  publisher = {John Wiley and Sons, Ltd},
  year = {2000},
  author = {G A Holzapfel},
  address = {England},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Hsu2001,
  author = {Edward Hsu},
  title = {Generalized Line Integral Convolution Rendering of Diffusion Tensor
	Fields},
  booktitle = ISMRM,
  year = {2001},
  pages = {790},
  file = {:Users/gk/lit/pdf/hsuISMRM01GeneralizedLineIntegralConvolutionRenderingOfDTFields.pdf:PDF},
  owner = {gk},
  timestamp = {2009.09.20},
  url = {http://cds.ismrm.org/ismrm-2001/PDF3/0790.pdf}
}

@ARTICLE{GLK:hsu98,
  author = {E W Hsu and A L Muzikant and S A Matulevicius and R C Penland and
	C S Henriquez},
  title = {Magnetic resonance myocardial fiber-orientation mapping with direct
	histological correlation},
  journal = {American Journal of Physiology},
  year = {1998},
  volume = {274},
  pages = {1627--1634},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INCOLLECTION{GLK:Ikits2005,
  author = {M. Ikits and J. Kniss and A. Lefohn and C. Hansen},
  title = {Chap 39: Volume Rendering Techniques},
  booktitle = {GPU Gems 2: {P}rogramming Techniques for High-Performance Graphics
	and General-Purpose Computation},
  publisher = {Addison-Wesley Professional},
  year = {2005},
  editor = {Matt Pharr},
  owner = {gk},
  timestamp = {2009.12.16}
}

@ARTICLE{GLK:Izhikevich2008,
  author = {Eugene M. Izhikevich and Gerald M. Edelman},
  title = {Large-scale model of mammalian thalamocortical systems},
  journal = PNAS,
  year = {2008},
  volume = {105},
  pages = {3593--3598},
  number = {9},
  month = {March},
  doi = {10.1073pnas.0712231105},
  file = {izhikevichPNAS08LargeScaleModelOfMammalianThalamocorticalSystems.pdf:izhikevichPNAS08LargeScaleModelOfMammalianThalamocorticalSystems.pdf:PDF},
  owner = {gk},
  review = {used my brain dataset for some aspect of building this model},
  timestamp = {2008.04.06}
}

@ARTICLE{GLK:Jalba2007,
  author = {Andrei C. Jalba and Jos B. T. M. Roerdink},
  title = {Efficient Surface Reconstruction using Generalized Coulomb Potentials},
  journal = TVCG,
  year = {2007},
  volume = {13},
  pages = {1512--1518},
  number = {6},
  file = {jalbaVIS07EfficientSurfaceReconstructionUsingGeneralizedCoulombPotentials.pdf:jalbaVIS07EfficientSurfaceReconstructionUsingGeneralizedCoulombPotentials.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.22}
}

@INPROCEEDINGS{GLK:Jalba2003,
  author = {A. C. Jalba and J. B. T. M. Roerdink and M. H. F: Wilkinson},
  title = {Morphological hat-transform scale spaces and their use in texture
	classification},
  booktitle = {Proc. Intl. Conference on Image Processing (ICIP)},
  year = {2003},
  volume = {1},
  pages = {329--332},
  doi = {10.1109/ICIP.2003.1246965},
  file = {jalba03MorphologicalHatTransformScaleSpacesAndTheirUseInTextureClassification.pdf:jalba03MorphologicalHatTransformScaleSpacesAndTheirUseInTextureClassification.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Jalba2006,
  author = {Andrei C. Jalba and Michael H. F. Wilkinson and Jos B. T. M. Roerdink},
  title = {Shape Representation and Recognition Through Morphological Curvature
	Scale Spaces},
  journal = TIP,
  year = {2006},
  volume = {15},
  pages = {331--341},
  number = {2},
  file = {jalbaTIP06ShapeRepresentationAndRecognitionThroughMorphologicalCurvatureScaleSpaces.pdf:jalbaTIP06ShapeRepresentationAndRecognitionThroughMorphologicalCurvatureScaleSpaces.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Jalba2004,
  author = {Andrei C Jalba and Michael H F Wilkinson and Jos B T M Roerdink},
  title = {{CPM}: {A} Deformable Model for Shape Recovery and Segmentation Based
	on Charged Particles},
  journal = PAMI,
  year = {2004},
  volume = {26},
  pages = {1320--1335},
  number = {10},
  file = {jalbaPAMI04CPMADeformableModelForShapeRecoveryAndSegmenationBasedOnChargedParticles.pdf:jalbaPAMI04CPMADeformableModelForShapeRecoveryAndSegmenationBasedOnChargedParticles.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  review = {main thing I'm adding is *constraints*
	
	
	interpolates the energy and force from pixel-based charges, but doesn't
	interpolate the image itself
	
	
	does use some kind of coarse-to-find strategy to optimize finding
	edges at finest scale
	
	
	his ridge/valley stuff (fig 14) confuses ridges and valleys},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Jiao2006,
  author = {Xiangmin Jiao},
  title = {Volume and Feature Preservation in Surface Mesh Optimization},
  booktitle = {Proc. 15th Intl. Meshing Roundtable},
  year = {2006},
  pages = {359--374},
  month = {Sept},
  publisher = {Springer-Verlag},
  file = {:Users/gk/lit/pdf/jiao06VolumeAndFeaturePreservationInSurfaceMeshOptimization.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.27}
}

@INPROCEEDINGS{GLK:Jiao2005,
  author = {X. Jiao and P. Alexander},
  title = {Parallel feature-preserving mesh smoothing},
  booktitle = {Proc. Int. Conf. Comput. Sci. Appl.},
  year = {2005},
  pages = {1180--1189},
  file = {:Users/gk/lit/pdf/jiao05ParallelFeaturePreservingMeshSmoothing.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.27}
}

@INPROCEEDINGS{GLK:Jolley2007,
  author = {Matthew Jolley and Jeroen Stinstra and David M. Weinstein and Steve
	Pieper and Ra{\'u}l San Jos{\'e} Est{\'e}par and Gordon L. Kindlmann
	and Robert S. MacLeod and Dana H. Brooks and John K. Triedman},
  title = {Open-Source Environment for Interactive Finite Element Modeling of
	Optimal {ICD} Electrode Placement},
  booktitle = {Proc. 4th Intl. Functional Imaging and Modeling of the Heart},
  year = {2007},
  series = {Lecture Notes in Computer Science 4466},
  pages = {373--382},
  address = {Salt Lake City},
  month = {June},
  doi = {10.1007/978-3-540-72907-5_38},
  file = {jolleyFIMH07OpenSourceEnvironmentForInteractiveFiniteElementModelingOfOptimalICDelectrodePlacement.pdf:jolleyFIMH07OpenSourceEnvironmentForInteractiveFiniteElementModelingOfOptimalICDelectrodePlacement.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.07}
}

@ARTICLE{GLK:jonasson05,
  author = {Lisa Jonasson and Xavier Bresson and Patric Hagmann and Olivier Cuisenaire
	and Reto Meuli and Jean-Philippe Thiran},
  title = {White matter fiber tract segmentation in {DT-MRI} using geometric
	flows},
  journal = MedIA,
  year = {2005},
  volume = {9},
  pages = {223--236},
  file = {jonassonMIA04WhiteMatterFiberTractSegmentationInDTMRIUsingGeometricFlows.pdf:jonassonMIA04WhiteMatterFiberTractSegmentationInDTMRIUsingGeometricFlows.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:jonasson07,
  author = {Lisa Jonasson and Patric Hagmann and Claudio Pollo and Xavier Bresson
	and Cecilia Richero Wilson and Reto Meuli and Jean-Philippe Thiran},
  title = {A level set method for segmentation of the thalamus and its nuclei
	in {DT-MRI}},
  journal = {Signal Processing},
  year = {2007},
  volume = {87},
  pages = {309--321},
  file = {jonassonSP07ALevelSetMethodForSegmentationOfTheThalamusAndItsNucleiInDT-MRI.pdf:jonassonSP07ALevelSetMethodForSegmentationOfTheThalamusAndItsNucleiInDT-MRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:jones04,
  author = {Derek K. Jones},
  title = {The Effect of Gradient Sampling Schemes on Measures Derived from
	Diffusion Tensor {MRI}: {A} {M}onte {C}arlo Study},
  journal = MRM,
  year = {2004},
  volume = {51},
  pages = {807--815},
  file = {jonesMRM04TheEffectOfGradientSamplingSchemesOnMeasuresDerivedFromDTMRIaMonteCarloStudy.pdf:jonesMRM04TheEffectOfGradientSamplingSchemesOnMeasuresDerivedFromDTMRIaMonteCarloStudy.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:jones99,
  author = {D. K. Jones and M. A. Horsfield and A. Simmons},
  title = {Optimal Strategies for Measuring Diffusion in Anisotropic Systems
	by Magnetic Resonance Imaging},
  journal = MRM,
  year = {1999},
  volume = {42},
  pages = {515--525},
  file = {jonesMRM99OptimalStrategiesForMeasuringDiffusionInAnisotropicSystemsByMRI.pdf:jonesMRM99OptimalStrategiesForMeasuringDiffusionInAnisotropicSystemsByMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:jonesStroke99,
  author = {Derek K. Jones and David Lythgoe and Mark A Horsfield and Andrew
	Simmons and Steve C. R. Williams and Hugh S. Markus},
  title = {Characterization of White Matter Damage in Ischemic Leukoaraiosis
	with Diffusion Tensor {MRI}},
  journal = {Stroke},
  year = {1999},
  volume = {30},
  pages = {393--397},
  file = {jonesStroke99CharacterizationOfWhiteMatterDamageInIschemicLeukoaraiosisWithDiffusionTensorMRI.pdf:jonesStroke99CharacterizationOfWhiteMatterDamageInIschemicLeukoaraiosisWithDiffusionTensorMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Kotter2004,
  author = {Rolf K\"{o}tter},
  title = {Online Retrieval, Processing, and Visualization of Primate Connectivity
	Data From the {CoCoMac} Database},
  journal = {Neuroinformatics},
  year = {2004},
  volume = {2},
  pages = {127--144},
  file = {:Users/gk/lit/pdf/kotter04CoCoMac.pdf:PDF},
  owner = {gk},
  timestamp = {2009.04.25}
}

@INPROCEEDINGS{GLK:Kohn2007,
  author = {Alexander K\{"o}hn and Florian Weiler and Jan Klein and Olaf Konrad
	and Horst Hahn and Heinz-Otto Peitgen},
  title = {State-of-the-Art Computer Graphics in Neurosurgical Planning and
	Risk Assessment},
  booktitle = {Proceedings Eurographics 2007 Short Papers},
  year = {2007},
  pages = {117--120},
  file = {kohnEG07StateOfTheArtComputerGraphicsInNeurosurgicalPlanningAndRiskAssessment.pdf:kohnEG07StateOfTheArtComputerGraphicsInNeurosurgicalPlanningAndRiskAssessment.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@INPROCEEDINGS{GLK:Kalra1989,
  author = {D Kalra and A H Barr},
  title = {Guaranteed ray intersections with implicit surfaces},
  booktitle = SIGGRAPH # { 1989},
  year = {1989},
  pages = {297--306},
  doi = {10.1145/74333.74364},
  file = {kalraSIGGRAPH89GuaranteedRayIntersectionsWithImplicitSurfaces.pdf.pdf:kalraSIGGRAPH89GuaranteedRayIntersectionsWithImplicitSurfaces.pdf.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Kamada2005,
  author = {Kyousuke Kamada and Yutaka Sawamura and Fumiya Takeuchi and Hideaki
	Kawaguchi and Shinya Kuriki and Tomoki Todo and Akio Morita and Yoshitaka
	Masutani and Shigeki Aoki and Takaaki Kirino},
  title = {Functional Identification Of The Primary Motor Area By Corticospinal
	Tractography},
  journal = {Neurosurgery},
  year = {2005},
  volume = {56},
  pages = {98--109},
  number = {1},
  month = {Jan},
  comment = {Operative Neurosurgery Supplement 1},
  doi = {DOI:10.1227/01.NEU.0000144311.88383.EF},
  file = {kamada05FunctionalIdentificationOfThePrimaryMoterAreaByCorticospinalTractography.pdf:kamada05FunctionalIdentificationOfThePrimaryMoterAreaByCorticospinalTractography.pdf:PDF},
  keywords = {neurosurgery tumor},
  owner = {gk},
  timestamp = {2008.11.12}
}

@ARTICLE{GLK:Kanaan2005,
  author = {R A A Kanaan and J-S Kim and W E Kaufmann and G D Pearlson and G
	J Barker and P K McGuire},
  title = {Diffusion Tensor Imaging In Schizophrenia},
  journal = {Biological Psychiatry},
  year = {2005},
  volume = {58},
  pages = {921--929},
  month = {December},
  day = {15},
  file = {kanaan05DiffusionTensorImagingInSchizophrenia.pdf:kanaan05DiffusionTensorImagingInSchizophrenia.pdf:PDF},
  issue = {12},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Karkanis2001,
  author = {Tasso Karkanis and A. James Stewart},
  title = {Curvature-Dependent Triangulation of Implicit Surfaces},
  journal = CGnA,
  year = {2001},
  volume = {21},
  pages = {60--69},
  number = {2},
  file = {karkanisCGA01CurvatureDependentTriangulationOfImplicitSurfaces.pdf:karkanisCGA01CurvatureDependentTriangulationOfImplicitSurfaces.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:Kass1988,
  author = {Michael Kass and Andrew Witkin and Demetri Terzopoulos},
  title = {Snakes: {A}ctive Contour Model},
  journal = IJCV,
  year = {1988},
  volume = {1},
  pages = {321--331},
  number = {4},
  month = {January},
  doi = {10.1007/BF00133570},
  file = {kass88SnakesActiveContourModels.pdf:kass88SnakesActiveContourModels.pdf:PDF},
  keywords = {contours, scale-space},
  owner = {gk},
  review = {kind of amazing that Kass hasn't already done SSP
	
	
	have to read Gauch & Pizer
	
	
	uses E^*_{snake} as notation for total snake energy},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Kelly2001,
  author = {P.J. Kelly and E.T. Hedley-Whyte and J. Primavera and J. He and R.G.
	Gonzalez},
  title = {Diffusion {MRI} in ischemic stroke compared to pathologically verified
	infarction},
  journal = {Neurology},
  year = {2001},
  volume = {56},
  pages = {914--920},
  number = {7},
  file = {kellyNeurology01DiffusionMRIInIschemicStrokeComparedToPathologicallyVerifiedInfarction.pdf:kellyNeurology01DiffusionMRIInIschemicStrokeComparedToPathologicallyVerifiedInfarction.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@ARTICLE{GLK:Keys1981,
  author = {R. Keys},
  title = {Cubic convolution interpolation for digital image processing},
  journal = {IEEE Trans. Acoustics, Speech and Signal Processing},
  year = {1981},
  volume = {29},
  pages = {1153--1160},
  number = {6},
  month = {Dec},
  owner = {gk},
  timestamp = {2009.12.16}
}

@ARTICLE{GLK:Kim2005,
  author = {Dae-Shik Kim and Mina Kim},
  title = {Combining Functional and Diffusion Tensor {MRI}},
  journal = ANYAS,
  year = {2005},
  volume = {1064},
  pages = {1--15},
  doi = {10.1196/annals.1340.005},
  file = {kimANYAS05CombiningFunctionalAndDiffusionTensorMRI.pdf:kimANYAS05CombiningFunctionalAndDiffusionTensorMRI.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Kim2007,
  author = {Se Hyung Kim and Jeong Min Lee and Joon-Goo Lee and Jong Hyo Kim
	and Philippe A. Lefere and Joon Koo Han and Byung Ihn Choi},
  title = {Computer-Aided Detection of Colonic Polyps at CT Colonography Using
	a Hessian Matrix-Based Algorithm: {P}reliminary Study},
  journal = {American Journal of Roentgenology},
  year = {2007},
  volume = {189},
  pages = {41--51},
  month = {July},
  doi = {DOI:10.2214/AJR.07.2072},
  file = {kim07ComputerAidedDetectionOfColonicPolypsAtCTColonographyUsingAHessianMatrixBasedAlgorithm_.pdf:kim07ComputerAidedDetectionOfColonicPolypsAtCTColonographyUsingAHessianMatrixBasedAlgorithm_.pdf:PDF},
  keywords = {colon, curvature},
  owner = {gk},
  timestamp = {2008.04.24}
}

@MISC{GLK:Teem,
  author = {G Kindlmann},
  title = {Teem: Tools to process and visualize scientific data and images},
  howpublished = {http://teem.sf.net},
  owner = {gk},
  timestamp = {2007.11.20},
  url = {http://teem.sf.net}
}

@INPROCEEDINGS{GLK:superquad04,
  author = {Gordon Kindlmann},
  title = {Superquadric Tensor Glyphs},
  booktitle = {Proc. IEEE TVCG/EG Symposium on Visualization},
  year = {2004},
  pages = {147--154},
  month = {May},
  file = {kindlmannVissym04SuperquadricTensorGlyphs.pdf:kindlmannVissym04SuperquadricTensorGlyphs.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Kindlmann1998,
  author = {G Kindlmann and JW Durkin},
  title = {Semi-Automatic Generation of Transfer Functions for Direct Volume
	Rendering},
  booktitle = {IEEE Symposium On Volume Visualization},
  year = {1998},
  pages = {79--86},
  month = {October},
  owner = {gk},
  timestamp = {2007.12.11},
  url = {http://www.cs.utah.edu/~gk/papers/vis98}
}

@ARTICLE{GLK:Kindlmann2007a,
  author = {Gordon Kindlmann and Daniel B. Ennis and Ross T. Whitaker and Carl-Fredrik
	Westin},
  title = {Diffusion Tensor Analysis with Invariant Gradients and Rotation Tangents},
  journal = TMI,
  year = {2007},
  volume = {26},
  pages = {1483--1499},
  number = {11},
  month = {November},
  doi = {10.1109/TMI.2007.907277},
  file = {kindlmannTMI07DiffusionTensorAnalysisWithIGRT.pdf:kindlmannTMI07DiffusionTensorAnalysisWithIGRT.pdf:PDF},
  owner = {gk},
  timestamp = {2007.09.17}
}

@INPROCEEDINGS{GLK:Kindlmann2007b,
  author = {G Kindlmann and RSJ Est{\'e}par and M Niethammer and S Haker and
	C-F Westin},
  title = {Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference
	Measurement},
  booktitle = MICCAI # { 2007},
  year = {2007},
  series = {Lecture Notes in Computer Science 4792},
  pages = {1--9},
  address = {Brisbane, Australia},
  month = {October--November},
  file = {kindlmannMICCAI07GeodesicLoxodromes.pdf:kindlmannMICCAI07GeodesicLoxodromes.pdf:PDF},
  owner = {gk},
  timestamp = {2007.11.20}
}

@INPROCEEDINGS{GLK:Kindlmann2008,
  author = {Gordon Kindlmann and Ra{\'u}l San Jos{\'e} Est{\'e}par and Carl-Fredrik
	Westin},
  title = {Scale-Space Particles for Extracting Crease Features: {I}nitial Development
	and Visualization in Lung {CT}},
  booktitle = {Proceedings IEEE International Symposium on Biomedical Imaging (ISBI
	2008)},
  year = {2008},
  note = {(submitted)},
  owner = {gk},
  timestamp = {2007.12.23}
}

@ARTICLE{GLK:Kindlmann2007,
  author = {Gordon Kindlmann and Xavier Tricoche and Carl-Fredrik Westin},
  title = {Delineating white matter structure in diffusion tensor {MRI} with
	anisotropy creases},
  journal = MedIA,
  year = {2007},
  volume = {11},
  pages = {492--502},
  number = {5},
  month = {October},
  doi = {doi:10.1016/j.media.2007.07.005},
  file = {kindlmannMIA07DelineatingWhiteMatterStructureInDiffusionTensorMRIWithAnisotropyCreases.pdf:kindlmannMIA07DelineatingWhiteMatterStructureInDiffusionTensorMRIWithAnisotropyCreases.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  timestamp = {2007.09.17}
}

@INPROCEEDINGS{GLK:Kindlmann2006,
  author = {G Kindlmann and X Tricoche and C-F Westin},
  title = {Anisotropy Creases Delineate White Matter Structure in Diffusion
	Tensor {MRI}},
  booktitle = MICCAI # { 2006},
  year = {2006},
  series = {Lecture Notes in Computer Science 4190},
  pages = {126--133},
  address = {Copenhagen, Denmark},
  month = {October},
  file = {kindlmannMiccai06AnisoCreases.pdf:kindlmannMiccai06AnisoCreases.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Kindlmann1999,
  author = {Gordon Kindlmann and David Weinstein},
  title = {Hue-Balls and Lit-Tensors for Direct Volume Rendering of Diffusion
	Tensor Fields},
  booktitle = VIS # { 1999},
  year = {1999},
  pages = {183--189},
  month = {October},
  owner = {gk},
  timestamp = {2008.01.04}
}

@ARTICLE{GLK:Kindlmann2000,
  author = {Gordon Kindlmann and David Weinstein and David Hart},
  title = {Strategies for Direct Volume Rendering of Diffusion Tensor Fields},
  journal = TVCG,
  year = {2000},
  volume = {6},
  pages = {124--138},
  number = {2},
  month = {April--June},
  doi = {10.1109/2945.856994},
  file = {kindlmannTVCG00StrategiesForDVRofDT.pdf:kindlmannTVCG00StrategiesForDVRofDT.pdf:PDF},
  owner = {gk},
  timestamp = {2007.10.22}
}

@ARTICLE{GLK:Kindlmann2005,
  author = {G Kindlmann and DM Weinstein and GM Jones and CR Johnson and MR Capecchi
	and C Keller},
  title = {Practical vessel imaging by computed tomography in live transgenic
	mouse models for human tumors},
  journal = {Molecular Imaging},
  year = {2005},
  volume = {4},
  pages = {417--424},
  number = {4},
  file = {kindlmann05PracticalVesselImagingByComputedTomographyInLiveTransgenicMouseModelsForHumanTumors.pdf:kindlmann05PracticalVesselImagingByComputedTomographyInLiveTransgenicMouseModelsForHumanTumors.pdf:PDF},
  owner = {gk},
  timestamp = {2007.12.11}
}

@ARTICLE{GLK:Kindlmann2006a,
  author = {G Kindlmann and C-F Westin},
  title = {Diffusion Tensor Visualization with Glyph Packing},
  journal = TVCG,
  year = {2006},
  volume = {12},
  pages = {1329--1335},
  number = {5},
  month = {September-October},
  comment = {Proceedings Visualization / Information Visualization 2006},
  file = {kindlmannTVCG06GlyphPacking.pdf:kindlmannTVCG06GlyphPacking.pdf:PDF},
  owner = {gk},
  timestamp = {2007.11.20}
}

@INPROCEEDINGS{GLK:Kindlmann2003,
  author = {G Kindlmann and R Whitaker and T Tasdizen and T M\"{o}ller},
  title = {Curvature-Based Transfer Functions for Direct Volume Rendering: {M}ethods
	and Applications},
  booktitle = VIS # { 2003},
  year = {2003},
  pages = {513--520},
  month = {October},
  file = {kindlmannVis03CurvatureBasedTransferFunctions_.pdf:kindlmannVis03CurvatureBasedTransferFunctions_.pdf:PDF},
  owner = {gk},
  timestamp = {2007.12.11}
}

@PHDTHESIS{GLK:phd04,
  author = {Gordon L Kindlmann},
  title = {Visualization and Analysis of Diffusion Tensor Fields},
  school = {University of Utah},
  year = {2004},
  month = {September},
  note = {\url{http://www.cs.utah.edu/~gk/PhD}},
  comment = {\url{http://www.cs.utah.edu/research/techreports/2004/UUCS-04-014.pdf}},
  file = {kindlmannPHD04.pdf:kindlmannPHD04.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30},
  url = {http://www.cs.utah.edu/~gk/PhD/}
}

@ARTICLE{GLK:Kindlmann2009,
  author = {Gordon L. Kindlmann and Ra{\'u}l San Jos{\'e} Est{\'e}par and Stephen
	M. Smith and Carl-Fredrik Westin},
  title = {Sampling and Visualizing Creases with Scale-Space Particles},
  journal = TVCG,
  year = {2009},
  volume = {15},
  pages = {1415--1424},
  number = {6},
  address = {Los Alamitos, CA, USA},
  doi = {10.1109/TVCG.2009.177},
  issn = {1077-2626},
  owner = {gk},
  publisher = {IEEE Computer Society},
  timestamp = {2009.10.26}
}

@ARTICLE{GLK:Kinoshita2008,
  author = {Manabu Kinoshita and Naoya Hashimoto and Tetsu Goto and Naoki Kagawa
	and Haruhiko Kishima and Shuichi Izumoto and Hisashi Tanaka and Norihiko
	Fujita and Toshiki Yoshiminea},
  title = {Fractional anisotropy and tumor cell density of the tumor core show
	positive correlation in diffusion tensor magnetic resonance imaging
	of malignant brain tumors},
  journal = NI,
  year = {2008},
  volume = {43},
  pages = {29--35},
  number = {1},
  month = {Oct},
  doi = {doi:10.1016/j.neuroimage.2008.06.041},
  file = {kinoshitaNI08FractionalAnisotropyAndTumorCellDensityOfTheTumorCoreShowPositiveCorrelationInDTMRIOfMalignantBrainTumors.pdf:kinoshitaNI08FractionalAnisotropyAndTumorCellDensityOfTheTumorCoreShowPositiveCorrelationInDTMRIOfMalignantBrainTumors.pdf:PDF},
  keywords = {tumor neurosurgery},
  owner = {gk},
  timestamp = {2008.11.12}
}

@ARTICLE{GLK:Kinoshita2005,
  author = {Manabu Kinoshita and Kei Yamada and Naoya Hashimoto and Amami Kato
	and Shuichi Izumoto and Takahito Baba, and Motohiko Maruno and Tsunehiko
	Nishimura and Toshiki Yoshiminea},
  title = {Fiber-tracking does not accurately estimate size of fiber bundle
	in pathological condition: initial neurosurgical experience using
	neuronavigation and subcortical white matter stimulation},
  journal = NI,
  year = {2005},
  volume = {25},
  pages = {424-429},
  number = {1},
  month = {April},
  doi = {10.1016/j.neuroimage.2004.07.076},
  file = {kinoshitaNeuroImage05FiberTrackingDoesNotAccuratelyEstimateSizeOfFiberBundleInPathologicalCondition_.pdf:kinoshitaNeuroImage05FiberTrackingDoesNotAccuratelyEstimateSizeOfFiberBundleInPathologicalCondition_.pdf:PDF},
  keywords = {tumor qazi},
  owner = {gk},
  timestamp = {2007.09.19}
}

@INPROCEEDINGS{GLK:Klein2005,
  author = {Thomas Klein and Thomas Ertl},
  title = {Scale-Space Tracking of Critical Points in {3D} Vector Fields},
  booktitle = {Proc. Workshop on Topology-Based Methods in Visualization},
  year = {2005},
  pages = {35--49},
  file = {klein05ScaleSpaceTrackingOfCriticalPointsIn3DVectorFields.pdf:klein05ScaleSpaceTrackingOfCriticalPointsIn3DVectorFields.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  review = {considers scale-space behavior of critical points in vector fields:
	points where the vector field is zero
	
	
	that definition of critical point leads to compact formulations of
	the scale-space trajectories of critical points according to either
	a feature flow field, or the implicit function theorem.
	
	
	starts by finding all critical points at the finest scale
	
	
	On scale-interpolation: does either a lot of discrete samples, or
	only needs two at-a-time to do the forward integration up through
	scale
	
	
	claim to exploit the transform of derivative along scale into laplacian
	in space
	
	
	had problems with numerical accuracy of their derivatives, had to
	use a predictor/corrector thing to re-find the critical point at
	each new scale.
	
	
	apparently handle "bifurcations", but I didn't understand that part
	
	
	basic visualization results were to find the critical points that
	lasted the longest in scale-space},
  timestamp = {2008.03.23}
}

@ARTICLE{GLK:Klingberg2000,
  author = {T Klingberg and M Hedehus and E Temple and T Salz and J D E Gabrielli
	and M E Moseley and R A Poldrack},
  title = {Microstructure of Temporo-Parietal White Matter as a Basis for Reading
	Ability: {E}vidence from Diffusion Tensor Magnetic Resonance Imaging},
  journal = {Neuron},
  year = {2000},
  volume = {25},
  pages = {493--500},
  file = {klingbergNeuron00MicrostructureOfTemporoParietalWhiteMatterAsABasisForReadingAbilityEvidenceFromDiffusionTensorMagneticResonanceImaging.pdf:klingbergNeuron00MicrostructureOfTemporoParietalWhiteMatterAsABasisForReadingAbilityEvidenceFromDiffusionTensorMagneticResonanceImaging.pdf:PDF},
  issue = {2},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Kniss2002,
  author = {J Kniss and G Kindlmann and C Hansen},
  title = {Multidimensional Transfer Functions for Interactive Volume Rendering},
  journal = TVCG,
  year = {2002},
  volume = {8},
  pages = {270--285},
  number = {3},
  month = {July--September},
  owner = {gk},
  timestamp = {2007.12.11}
}

@INPROCEEDINGS{GLK:Kniss2001,
  author = {J Kniss and G Kindlmann and C Hansen},
  title = {Interactive Volume Rendering Using Multi-Dimensional Transfer Functions
	and Direct Manipulation Widgets},
  booktitle = VIS # { 2001},
  year = {2001},
  month = {October},
  owner = {gk},
  timestamp = {2007.12.11},
  url = {http://www.cs.utah.edu/~jmk/papers/vis01}
}

@INPROCEEDINGS{GLK:knutsson87,
  author = {Hans Knutsson},
  title = {A Tensor Representation of 3-{D} Structures},
  booktitle = {5th IEEE-ASSP and EURASIP Workshop on Multidimensional Signal Processing},
  year = {1987},
  address = {Noordwijkerhout, Netherlands},
  month = {September},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:koay06,
  author = {C Koay and L-C Chang and C Pierpaoli and P J Basser},
  title = {Error Propagation Framework for Diffusion Tensor Imaging},
  booktitle = ISMRM # { 2006},
  year = {2006},
  pages = {1067},
  file = {koayISMRM06ErrorPropagationFrameworkForDiffusionTensorImaging.pdf:koayISMRM06ErrorPropagationFrameworkForDiffusionTensorImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:koayMRM06,
  author = {Cheng Guan Koay and John D. Carew and Andrew L. Alexander and Peter
	J. Basser and 
	
	M. Elizabeth Meyerand},
  title = {Investigation of Anomalous Estimates of Tensor-Derived Quantities
	in Diffusion Tensor Imaging},
  journal = MRM,
  year = {2006},
  volume = {55},
  pages = {930--936},
  file = {koayMRM06InvestigationOfAnomalousEstimatesOfTensorDerivedQuantitiesInDiffusionTensorImaging.pdf:koayMRM06InvestigationOfAnomalousEstimatesOfTensorDerivedQuantitiesInDiffusionTensorImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.08.02}
}

@ARTICLE{GLK:Koay2006,
  author = {Cheng Guan Koay and Lin-Ching Chang and John D. Carew and Carlo Pierpaoli
	and Peter J. Basser},
  title = {A unifying theoretical and algorithmic framework for least squares
	methods of estimation in diffusion tensor imaging},
  journal = JMR,
  year = {2006},
  volume = {182},
  pages = {115--125},
  number = {1},
  file = {koayJMR06AUnifyingTheoreticalAndAlgorithmicFrameworkForLeastSquaresMethodsOfEstimationInDiffusionTensorImaging.pdf:koayJMR06AUnifyingTheoreticalAndAlgorithmicFrameworkForLeastSquaresMethodsOfEstimationInDiffusionTensorImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.08.02}
}

@INPROCEEDINGS{GLK:Koenderink1993,
  author = {J J Koenderink and A J van~Doorn},
  title = {Local features of smooth shapes: {R}idges and courses},
  booktitle = {Proc. SPIE, Geometric Methods in Computer Vision II},
  year = {1993},
  editor = {BC Vemuri},
  volume = {2031},
  pages = {2--13},
  month = jun,
  adsnote = {Provided by the Smithsonian/NASA Astrophysics Data System},
  adsurl = {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1993SPIE.2031....2K&db_key=PHY},
  file = {Koendrink-doorn-SPIE-GMCV-1993.pdf:Koendrink-doorn-SPIE-GMCV-1993.pdf:PDF},
  owner = {gk},
  review = {learned from GLK:Peikert2008 that they give an example of where they
	think height ridges fail, the "curved gutter"},
  timestamp = {2007.07.06},
  url = {http://spiedl.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PSISDG002031000001000002000001&idtype=cvips&gifs=yes}
}

@ARTICLE{GLK:Koenderink1994,
  author = {Jan J Koenderink and Andrea J van Doorn},
  title = {Two-plus-one-dimensional differential geometry},
  journal = {Pattern Recognition Letters},
  year = {1994},
  volume = {15},
  pages = {439--443},
  month = {May},
  file = {koenderinkPRL94TwoPlusOneDimensionalDifferentialGeometry.pdf:koenderinkPRL94TwoPlusOneDimensionalDifferentialGeometry.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  review = {available from:
	
	
	http://www.lems.brown.edu/vision/courses/computer-vision/papers/segmentation/surface%20networks/
	
	
	basically mocks Eberly's "ridge finders" because they will never be
	able to "really" describe the way that water flows downhill. whoa.},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Kruger2005,
  author = {Jens Kr{\"u}ger and Peter Kipfer and Polina Kondratieva and R{\"u}diger
	Westermann},
  title = {A Particle System for Interactive Visualization of {3D} Flows},
  journal = TVCG,
  year = {2005},
  volume = {11},
  pages = {744--756},
  number = {6},
  file = {kruegerTVCG05AParticleSystemForInteractiveVisualizationOf3DFlows.pdf:kruegerTVCG05AParticleSystemForInteractiveVisualizationOf3DFlows.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Kubicki2007,
  author = {Marek Kubicki and Robert McCarley and Carl-Fredrik Westin and Hae-Jeong
	Park and Stephan Maier and Ron Kikinis and Ferenc A. Jolesz and Martha
	E. Shenton},
  title = {A review of diffusion tensor imaging studies in schizophrenia},
  journal = {Journal of Psychiatric Research},
  year = {2007},
  volume = {41},
  pages = {15--30},
  doi = {10.1016/j.jpsychires.2005.05.005},
  file = {:Users/gk/lit/pdf/kubicki07AReviewOfDiffusionTensorImagingStudiesInSchizophrenia.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.28}
}

@ARTICLE{GLK:Kubicki2003,
  author = {M Kubicki and C-F Westin and S E Maier and H Mamata and M Frumin
	and H Ernst-Hirshefeld and R Kikinis and F A Jolesz and R W McCarley
	and M E Shenton},
  title = {Cingulate Fasciculus Integrity Disruption in Schizophrenia: {A} Magnetic
	Resonance Diffusion Tensor Imaging Study},
  journal = {Biological Psychiatry},
  year = {2003},
  volume = {54},
  pages = {1171--1180},
  doi = {doi:10.1016/S0006-3223(03)00419-0},
  file = {kubicki03CingulateFasciculusIntegrityDisruptionInSchizophreniaAMagneticResonanceDiffusionTensorImagingStudy.pdf:kubicki03CingulateFasciculusIntegrityDisruptionInSchizophreniaAMagneticResonanceDiffusionTensorImagingStudy.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Kubicki2002,
  author = {M. Kubicki and C.-F. Westin and S. E. Maier and H. Mamata and M.
	Frumin and H. Ernst-Hirshefeld and R. Kikinis and F. A. Jolesz and
	R. W. McCarley and M. E. Shenton},
  title = {Diffusion Tensor Imaging And Its Application To Neuropsychiatric
	Disorders},
  journal = {Harvard Rev of Psychiatry},
  year = {2002},
  volume = {10},
  pages = {234--336},
  file = {:Users/gk/lit/pdf/kubicki02DTIandItsApplicationToNeuropsychiatricDisorders.pdf:PDF},
  owner = {gk},
  timestamp = {2009.04.21}
}

@ARTICLE{GLK:Kuijper2004,
  author = {Arjan Kuijper},
  title = {On detecting all saddle points in {2D} images},
  journal = {Pattern Recognition Letters},
  year = {2004},
  volume = {25},
  pages = {1665--1672},
  number = {15},
  file = {kuijper04OnDetectingAllSaddlePointsIn2DImages.pdf:kuijper04OnDetectingAllSaddlePointsIn2DImages.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05}
}

@PHDTHESIS{GLK:Kuijper2002,
  author = {Arjan Kuijper},
  title = {The deep structure of {G}aussian scale space images},
  school = {Universiteit Utrecht},
  year = {2002},
  file = {kuijperPHD02DeepStructureOfGaussianScaleSpaceImages.pdf:kuijperPHD02DeepStructureOfGaussianScaleSpaceImages.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05},
  url = {http://igitur-archive.library.uu.nl/dissertations/2002-0904-155155/inhoud.htm}
}

@INPROCEEDINGS{GLK:Kuijper1999,
  author = {Arjan Kuijper and Luc Florack},
  title = {Calculations on Critical Points under {G}aussian Blurring},
  booktitle = {Proc. 2nd Intl. Conf. Scale-Space Theories in Computer Vision},
  year = {1999},
  volume = {1682},
  series = {Lecture Notes In Computer Science},
  pages = {318--329},
  doi = {10.1007/3-540-48236-9_28},
  file = {kuijper99CalculationsOnCriticalPointsUnderGaussianBlurring.pdf:kuijper99CalculationsOnCriticalPointsUnderGaussianBlurring.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Kuijper2005,
  author = {Arjan Kuijper and Luc M. J. Florack},
  title = {Using Catastrophe Theory to Derive Trees from Images},
  journal = JMIV,
  year = {2005},
  volume = {23},
  pages = {219--238},
  file = {kuijperJMIV05UsingCatastropheTheoryToDeriveTreesFromImages.pdf:kuijperJMIV05UsingCatastropheTheoryToDeriveTreesFromImages.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Kuijper2003,
  author = {Arjan Kuijper and Luc M. J. Florack},
  title = {The Hierarchical Structure of Images},
  journal = TIP,
  year = {2003},
  volume = {12},
  pages = {1067--1079},
  number = {9},
  month = {September},
  file = {kuijperTIP03TheHierarchicalStructureOfImages.pdf:kuijperTIP03TheHierarchicalStructureOfImages.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.29}
}

@ARTICLE{GLK:Kweon1994,
  author = {In So Kweon and Takeo Kanade},
  title = {Extracting Topographic Terrain Features from Elevation Maps},
  journal = {CVGIP: Image Understanding},
  year = {1994},
  volume = {59},
  pages = {171--182},
  number = {2},
  month = {March},
  file = {kweonCVGIP94ExtractingTopographicTerrainFeaturesFromElevationMaps.pdf:kweonCVGIP94ExtractingTopographicTerrainFeaturesFromElevationMaps.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  review = {snagged from:
	
	
	http://www.lems.brown.edu/vision/courses/computer-vision/papers/segmentation/surface%20networks/},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Landman2007,
  author = {Bennett A. Landman and Jonathan A.D. Farrell and Craig K. Jones and
	Seth A. Smith and Jerry L. Prince and Susumu Mori},
  title = {Effects of diffusion weighting schemes on the reproducibility of
	{DTI}-derived fractional anisotropy, mean diffusivity, and principal
	eigenvector measurements at {1.5T}},
  journal = NI,
  year = {2007},
  volume = {36},
  pages = {1123--1138},
  number = {4},
  month = {July},
  file = {landmanNI07EffectsOfDiffusionWeightingSchemesOnTheReproducibilityOfDTIderivedFAMDandPrincipalEigenvectorMeasurementsAt15T.pdf:landmanNI07EffectsOfDiffusionWeightingSchemesOnTheReproducibilityOfDTIderivedFAMDandPrincipalEigenvectorMeasurementsAt15T.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Laptev2000,
  author = {Ivan Laptev and Helmut Mayer and Tony Lindeberg and Wolfgang Eckstein
	and Carsten Steger and Albert Baumgartner},
  title = {Automatic extraction of roads from aerial images based on scale space
	and snakes},
  journal = {Machine Vision and Applications},
  year = {2000},
  volume = {12},
  pages = {23--31},
  number = {1},
  doi = {10.1007/s001380050004},
  file = {laptev00AutomaticExtractionOfRoadsFromAerialImagesBasedOnScaleSpaceAndSnakes.pdf:laptev00AutomaticExtractionOfRoadsFromAerialImagesBasedOnScaleSpaceAndSnakes.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Bihan2003,
  author = {Denis LeBihan},
  title = {Looking into the Functional Architecture of the Brain with Diffusion
	{MRI}},
  journal = {Nature Reviews Neuroscience},
  year = {2003},
  volume = {4},
  pages = {469--480},
  number = {6},
  month = {June},
  doi = {10.1038/nrn1119},
  file = {LeBihan03LookingIntoTheFunctionalArchitectureOfTheBrainWithDiffusionMRI.pdf:LeBihan03LookingIntoTheFunctionalArchitectureOfTheBrainWithDiffusionMRI.pdf:PDF},
  keywords = {vaina, dMRI},
  owner = {gk},
  timestamp = {2007.09.18}
}

@TECHREPORT{GLK:Lenglet2003,
  author = {Christophe Lenglet and Rachid Deriche and Olivier Faugeras},
  title = {Diffusion Tensor Magnetic Resonance Imaging: {B}rain Connectivity
	Mapping},
  institution = INRIA # { (Sophia Antipolis)},
  year = {2003},
  number = {4983},
  month = {Oct},
  file = {lengletTR03DiffusionTensorMagneticResonanceImagingBrainConnectivityMapping.pdf:lengletTR03DiffusionTensorMagneticResonanceImagingBrainConnectivityMapping.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:lengletTMI06,
  author = {C Lenglet and M Rousson and R Deriche},
  title = {{DTI} Segmentation by Statistical Surface Evolution},
  journal = TMI,
  year = {2006},
  volume = {25},
  pages = {685--700},
  month = {June},
  file = {lengletTMI06DTISegmentationByStatisticalSurfaceEvolution.pdf:lengletTMI06DTISegmentationByStatisticalSurfaceEvolution.pdf:PDF},
  issue = {6},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:lengletJMIV06,
  author = {C Lenglet and M Rousson and R Deriche and O Faugeras},
  title = {Statistics on the Manifold of Multivariate Normal Distributions:
	Theory and Application to Diffusion Tensor {MRI} Processing},
  journal = JMIV,
  year = {2006},
  volume = {25},
  pages = {423--444},
  number = {3},
  file = {lengletJMIV06StatisticsOnTheManifoldOfMultivariateNormalDistributionsTheoryAndApplicationToDiffusionTensorMRIProcessing.pdf:lengletJMIV06StatisticsOnTheManifoldOfMultivariateNormalDistributionsTheoryAndApplicationToDiffusionTensorMRIProcessing.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@INPROCEEDINGS{DBLP:Lenglet05,
  author = {C Lenglet and M Rousson and R Deriche and O D Faugeras and S Lehericy
	and K Ugurbil},
  title = {A Riemannian Approach to Diffusion Tensor Images Segmentation.},
  booktitle = IPMI # { 2005},
  year = {2005},
  pages = {591--602},
  address = {Glenwood Springs, CO, USA},
  month = {July},
  file = {lengletIPMI05RiemannianApproachToDiffusionTensorImagesSegmentation.pdf:lengletIPMI05RiemannianApproachToDiffusionTensorImagesSegmentation.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@INPROCEEDINGS{GLK:Levet2007,
  author = {Florian Levet and Xavier Granier and Christophe Schlick},
  title = {Triangulation of uniform particle systems: its application to the
	implicit surface texturing},
  booktitle = {Proc. Winter School of Computer Graphics (WSCG)},
  year = {2007},
  pages = {271--278},
  file = {levet07TriangulationOfUniformParticleSystemsItsApplicationToTheImplicitSurfaceTexturing.pdf:levet07TriangulationOfUniformParticleSystemsItsApplicationToTheImplicitSurfaceTexturing.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Levet2006,
  author = {Florian Levet and Xavier Granier and Christophe Schlick},
  title = {Fast sampling of implicit surfaces by particle systems},
  booktitle = {Proc. Shape Modeling and Applications (SMI)},
  year = {2006},
  file = {levetSMI06FastSamplingOfImplicitSurfacesByParticleSystems.pdf:levetSMI06FastSamplingOfImplicitSurfacesByParticleSystems.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Levet2005,
  author = {Florian Levet and Julien Hadim and Patrick Reuter and Christophe
	Schlick},
  title = {Anisotropic Sampling for Differential Point Rendering of Implicit
	Surfaces},
  booktitle = WSCG,
  year = {2005},
  volume = {13},
  file = {levet05AnisotropicSamplingForDifferentialPointRenderingOfImplicitSurfaces.pdf:levet05AnisotropicSamplingForDifferentialPointRenderingOfImplicitSurfaces.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:levoy88,
  author = {M Levoy},
  title = {Display of Surfaces from Volume Data},
  journal = {IEEE Computer Graphics \& Applications},
  year = {1988},
  volume = {8},
  pages = {29-37},
  number = {5},
  owner = {gk},
  timestamp = {2009.12.16}
}

@ARTICLE{GLK:Liang2006,
  author = {Jianming Liang and Tim McInerney and Demetri Terzopoulos},
  title = {United Snakes},
  journal = MedIA,
  year = {2006},
  volume = {10},
  pages = {215--233},
  number = {2},
  file = {liangMIA06UnitedSnakes.pdf:liangMIA06UnitedSnakes.pdf:PDF},
  keywords = {contours},
  owner = {gk},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Lifshitz1990,
  author = {Lawrence M Lifshitz and Stephen M Pizer},
  title = {A Multiresolution Hierarchical Approach To Image Segmentation Based
	on Intensity Extrema},
  journal = PAMI,
  year = {1990},
  volume = {12},
  pages = {529--540},
  number = {6},
  file = {lifshitzPAMI90AMultiresolutionHierarchicalApproachToImageSegmentationBasedOnIntensityExtrema.pdf:lifshitzPAMI90AMultiresolutionHierarchicalApproachToImageSegmentationBasedOnIntensityExtrema.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:lin01,
  author = {Ching-Po Lin and Wen-Yih Isaac Tseng and Hui-Cheng Cheng and Jyh-Horng
	Chen},
  title = {Validation of Diffusion Tensor Magnetic Resonance Axonal Fiber Imaging
	with Registered Manganese-Enhanced Optic Tracts},
  journal = NI,
  year = {2001},
  volume = {14},
  pages = {1035--1047},
  file = {linNEUROIMAGE01ValidationOfDiffusionTensorMagneticResonanceAxonalFiberImagingWithRegisteredManganeseEnhancedOpticTracts.pdf:linNEUROIMAGE01ValidationOfDiffusionTensorMagneticResonanceAxonalFiberImagingWithRegisteredManganeseEnhancedOpticTracts.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INCOLLECTION{GLK:Lindeberg1999,
  author = {Tony Lindeberg},
  title = {Principles for Automatic Scale Selection},
  booktitle = {Handbook on Computer Vision and Applications},
  publisher = {Academic Press},
  year = {1999},
  volume = {2},
  pages = {239--274},
  address = {Boston, USA},
  file = {:lindeberg99PrinciplesForAutomaticScaleSelection.pdf:PDF},
  owner = {gk},
  timestamp = {2009.03.27}
}

@ARTICLE{GLK:Lindeberg1998,
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  pages = {117--154},
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  month = {November},
  file = {lindebergIJCV98EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:lindebergIJCV98EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Lindeberg1998a,
  author = {Tony Lindeberg},
  title = {Feature Detection with Automatic Scale Selection},
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  year = {1998},
  volume = {30},
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  number = {2},
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  file = {lindeberg98FeatureDetectionWithAutomaticScaleSelection.pdf:lindeberg98FeatureDetectionWithAutomaticScaleSelection.pdf:PDF},
  owner = {gk},
  review = {Equation (120) gives a normalization factor discrete data, and notes
	that unlike using sqrt(t), it is non-zero at t=0},
  timestamp = {2008.04.06}
}

@INPROCEEDINGS{GLK:Lindeberg1996,
  author = {Tony Lindeberg},
  title = {Edge Detection and Ridge Detection with Automatic Scale Selection},
  booktitle = CVPR # { 1996},
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  pages = {465--470},
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  doi = {10.1109/CVPR.1996.517113},
  file = {lindebergCVPR96EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:lindebergCVPR96EdgeDetectionAndRidgeDetectionWithAutomaticScaleSelection.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Lindeberg1994,
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	scales},
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  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Lindeberg1993,
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	Basis for Low-Level Feature Extraction},
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  year = {1993},
  volume = {3},
  pages = {349--376},
  number = {4},
  file = {lindeberg93DiscreteDerivativeApproximationsWithScaleSpacePropertiesABasisForLowLevelFeatureExtraction.pdf:lindeberg93DiscreteDerivativeApproximationsWithScaleSpacePropertiesABasisForLowLevelFeatureExtraction.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Lindeberg1993a,
  author = {Tony Lindeberg},
  title = {Effective scale: a natural unit for measuring scale-space lifetime},
  journal = PAMI,
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  pages = {1068--1074},
  number = {10},
  month = {October},
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  file = {lindebergPAMI93EffectiveScaleANaturalUnitForMeasuringScaleSpaceLifetime.pdf:lindebergPAMI93EffectiveScaleANaturalUnitForMeasuringScaleSpaceLifetime.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.28}
}

@ARTICLE{GLK:Lindeberg1990,
  author = {Tony Lindeberg},
  title = {Scale-Space for Discrete Signals},
  journal = PAMI,
  year = {1990},
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  pages = {234--254},
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  file = {lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:PDF},
  owner = {gk},
  timestamp = {2007.11.06}
}

@ARTICLE{GLK:Lindeberg1990a,
  author = {Tony Lindeberg},
  title = {Scale-space for discrete signals},
  journal = PAMI,
  year = {1990},
  volume = {12},
  pages = {234--254},
  number = {3},
  month = {March},
  doi = {10.1109/34.49051},
  file = {lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:lindebergPAMI90ScaleSpaceForDiscreteSignals.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.28}
}

@ARTICLE{GLK:Linsen2008,
  author = {Lars Linsen and Tran Van Long and Paul Rosenthal and Stephan Rosswog},
  title = {Surface Extraction from Multi-field Particle Volume Data Using Multi-dimensional
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  year = {2008},
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  owner = {gk},
  timestamp = {2009.06.28}
}

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  author = {David Lloret and Joan Serrat and Antonio M L{\'o}pez and Andr{\'e}s
	Soler and Juan J Villanueva},
  title = {Retinal image registration using creases as anatomical landmarks},
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  file = {lloret00RetinalImageRegistrationUsingCreasesAsAnatomicalLandmarks.pdf:lloret00RetinalImageRegistrationUsingCreasesAsAnatomicalLandmarks.pdf:PDF},
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  owner = {gk},
  timestamp = {2008.04.03}
}

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  owner = {gk},
  timestamp = {2007.07.09}
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  timestamp = {2007.07.09}
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@ARTICLE{GLK:Lu2006,
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  owner = {gk},
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  file = {luRAD04DTMRIOfIntracranialNeoplasiaAndAssociatedPeritumoralEdemaIntroductionOfTheTumorInfiltrationIndex.pdf:luRAD04DTMRIOfIntracranialNeoplasiaAndAssociatedPeritumoralEdemaIntroductionOfTheTumorInfiltrationIndex.pdf:PDF},
  keywords = {neurosurgery},
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@INPROCEEDINGS{GLK:L'opez1998,
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  owner = {gk},
  timestamp = {2008.04.03}
}

@BOOK{GLK:MacKay2003,
  title = {Information Theory, Inference, and Learning Algorithms},
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  owner = {gk},
  timestamp = {2008.07.15}
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@ARTICLE{GLK:Magnor2005,
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  timestamp = {2007.12.11}
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@INPROCEEDINGS{GLK:Magnor2004,
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  title = {Constrained Inverse Volume Rendering for Planetary Nebulae},
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  timestamp = {2007.12.11}
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@ARTICLE{GLK:Maintz1996,
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  timestamp = {2008.03.22}
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@ARTICLE{GLK:Malladi1995,
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  keywords = {contours},
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@ARTICLE{GLK:Manniesing2006,
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  keywords = {scale-space, ridges},
  owner = {gk},
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@INPROCEEDINGS{GLK:Manssour2002,
  author = {Isabel H. Manssour and Sergio S. Furuie and S\'{\i}lvia D. Olabarriaga
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  timestamp = {2008.01.21}
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@BOOK{GLK:mccarthy,
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@INPROCEEDINGS{GLK:McGraw2006,
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@ARTICLE{GLK:McInerney2000,
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@ARTICLE{GLK:McInerney1999,
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  keywords = {contours},
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@ARTICLE{GLK:McInerney1996,
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@ARTICLE{GLK:Meijering2002,
  author = {E. Meijering},
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	Signal and Image Processing},
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  year = {2002},
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  owner = {gk},
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@INPROCEEDINGS{GLK:Meijering1999,
  author = {E. H. W. Meijering and W. J. Niessen and M. A. Viergever},
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@ARTICLE{GLK:Melie-Garcia2008,
  author = {Lester Melie-Garc\'{i}a and Erick J. Canales-Rodr\'{i}guez and Yasser
	Alem\'{a}n-G\'{o}mez and Ching-Po Lin and Yasser Iturria-Medina and
	Pedro A. Vald\'{e}s-Hern\'{a}ndez},
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	profiles based on diffusion-weighted {MR} imaging},
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  volume = {42},
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  number = {2},
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  owner = {gk},
  timestamp = {2009.06.26}
}

@ARTICLE{GLK:Meyer2007,
  author = {Miriah Meyer and Robert M. Kirby and Ross Whitaker},
  title = {Topology, Accuracy, and Quality of Isosurface Meshes Using Dynamic
	Particles},
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  year = {2007},
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  number = {5},
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  file = {meyerVis07TopologyAccuracyAndQualityOfIsosurfaceMeshesUsingDynamicParticles.pdf:meyerVis07TopologyAccuracyAndQualityOfIsosurfaceMeshesUsingDynamicParticles.pdf:PDF},
  owner = {gk},
  timestamp = {2007.11.03}
}

@ARTICLE{GLK:Meyer2007a,
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  timestamp = {2007.11.03}
}

@ARTICLE{GLK:Meyer2008,
  author = {Miriah Meyer and Ross Whitaker and Robert M. Kirby and Christian
	Ledergerber and Hanspeter Pfister},
  title = {Particle-based Sampling and Meshing of Surfaces in Multimaterial
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  owner = {gk},
  timestamp = {2009.03.27}
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@INPROCEEDINGS{GLK:Meyer2005,
  author = {Miriah D. Meyer and Pierre Georgel and Ross T. Whitaker},
  title = {Robust Particle Systems for Curvature Dependent Sampling of Implicit
	Surfaces},
  booktitle = {Proc. Shape Modeling and Applications (SMI)},
  year = {2005},
  pages = {124--133},
  month = {June},
  file = {meyer05RobustParticleSystemsForCurvatureDependentSamplingOfImplicitSurfaces.pdf:meyer05RobustParticleSystemsForCurvatureDependentSamplingOfImplicitSurfaces.pdf:PDF},
  owner = {gk},
  timestamp = {2007.11.03}
}

@ARTICLE{GLK:Mikuni2007,
  author = {Nobuhiro Mikuni and Tsutomu Okada and Namiko Nishida and Junya Taki
	and Rei Enatsu and Akio Ikeda and Yukio Miki and Takashi Hanakawa
	Hidenao Fukuyama and Nobuo Hashimoto},
  title = {Comparison between motor evoked potential recording and fiber tracking
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  year = {2007},
  volume = {106},
  pages = {128--133},
  number = {1},
  file = {mikuni07ComparisonBetweenMotorEvokedPotentialRecordingAndFiberTrackingForEstimatingPyramidalTractsNearBrainTumors.pdf:mikuni07ComparisonBetweenMotorEvokedPotentialRecordingAndFiberTrackingForEstimatingPyramidalTractsNearBrainTumors.pdf:PDF},
  keywords = {qazi tumor},
  owner = {gk},
  timestamp = {2007.09.19}
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@INPROCEEDINGS{GLK:Miller1999,
  author = {Jason Miller and Jacob Furst},
  title = {The Maximal Scale Ridge: {I}ncorporating scale into the ridge definition},
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  year = {1999},
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  series = {Lecture Notes in Computer Science},
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  file = {miller99MaximalScaleRidge.pdf:miller99MaximalScaleRidge.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.22}
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@INPROCEEDINGS{GLK:mitchell88,
  author = {D Mitchell and A Netravali},
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@INPROCEEDINGS{GLK:Moberts2005,
  author = {B Moberts and A Vilanova and J J van~Wijk},
  title = {Evaluation of Fiber Clustering Methods for Diffusion Tensor Imaging},
  booktitle = VIS # { 2005},
  year = {2005},
  pages = {65--72},
  doi = {http://doi.ieeecomputersociety.org/10.1109/VIS.2005.29},
  file = {mobartsVis05EvaluationOfFiberClusteringMethodsForDiffusionTensorImaging.pdf:mobartsVis05EvaluationOfFiberClusteringMethodsForDiffusionTensorImaging.pdf:PDF},
  keywords = {diffusion, tractography, clustering},
  owner = {gk},
  timestamp = {2007.07.06}
}

@TECHREPORT{GLK:Monga1995,
  author = {Olivier Monga and Nasser Armande and Philippe Montesinos},
  title = {Thin nets and Crestlines: {A}pplication to Satellite Data and Medical
	Images},
  institution = INRIA # { (Rocquencourt)},
  year = {1995},
  number = {2480},
  month = {Feb},
  file = {mongaTR95ThinNetsAndCrestLinesApplicationToSatelliteDataAndMedicalImages.pdf:mongaTR95ThinNetsAndCrestLinesApplicationToSatelliteDataAndMedicalImages.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Mori2002a,
  author = {Susumu Mori and Walter E. Kaufmann and Christos Davatzikos and Bram
	Stieltjes and Laura Amodei and Kim Fredericksen and Godfrey D. Pearlson
	and Elias R. Melhem and Meiyappan Solaiyappan and Gerald V. Raymond
	and Hugo W. Moser and Peter C.M. van Zijl},
  title = {Imaging Cortical Association Tracts in the Human Brain Using Diffusion-Tensor-Based
	Axonal Tracking},
  journal = MRM,
  year = {2002},
  volume = {47},
  pages = {215--223},
  file = {moriMRM02ImagingCorticalAssociationTractsInTheHumanBrainUsingDifffusionTensorBasedAxonalTracking.pdf:moriMRM02ImagingCorticalAssociationTractsInTheHumanBrainUsingDifffusionTensorBasedAxonalTracking.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.03}
}

@BOOK{GLK:Mori2005,
  title = {{MRI} Atlas of Human White Matter},
  publisher = {Elsevier},
  year = {2005},
  author = {S Mori and S Wakana and LM Nagae-Poetscher and PCM Van Zijl},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:mori06,
  author = {Susumu Mori and Jiangyang Zhang},
  title = {Principles of Diffusion Tensor Imaging and Its Applications to Basic
	Neuroscience Research},
  journal = {Neuron},
  year = {2006},
  volume = {51},
  pages = {527--539},
  month = {September},
  day = {7},
  file = {moriNeuron06PrinciplesOfDiffusionTensorImagingAndItsApplicationsToBasicNeuroscienceResearch.pdf:moriNeuron06PrinciplesOfDiffusionTensorImagingAndItsApplicationsToBasicNeuroscienceResearch.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Mori2002,
  author = {S Mori and P C M van~Zijl},
  title = {Fiber tracking: {P}rinciples and strategies - {A} technical review},
  journal = NMRB,
  year = {2002},
  volume = {15},
  pages = {468--480},
  doi = {DOI:10.1002/nbm.781},
  file = {moriNMRB02FiberTrackingPrinciplesAndStrategies-review.pdf:moriNMRB02FiberTrackingPrinciplesAndStrategies-review.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@PHDTHESIS{GLK:Morse1994,
  author = {B S Morse},
  title = {Computation of Object Cores from Grey-Level Images},
  school = {University of North Carolina at Chapel Hill},
  year = {1994},
  address = {Chapel Hill, NC},
  file = {morsePHD94ComputationOfObjectCoresFromGrayLevelImages.pdf:morsePHD94ComputationOfObjectCoresFromGrayLevelImages.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Morse2005,
  author = {Bryan S. Morse and Weiming Liu and Terry S. Yoo and Kalpathi Subramanian},
  title = {Active Contours Using a Constraint-Based Implicit Representation},
  booktitle = CVPR,
  year = {2005},
  volume = {1},
  pages = {285--292},
  month = {June},
  doi = {10.1109/CVPR.2005.59},
  file = {morseCVPR05ActiveContoursUsingAConstraintBasedImplicitRepresentation.pdf:morseCVPR05ActiveContoursUsingAConstraintBasedImplicitRepresentation.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  review = {very interesting: using particles in a radial-basis-function representation
	of an implicit surface- so they're rather expressive particles to
	represent a surface (implicitly), and can be drawn towards an edge
	function (external energy). However, the particles also have inter-particle
	repulsion, to keep the points well distributed.},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:moseley90,
  author = {M E Moseley and Y Cohen and J Mintorovitch and L Chileuitt and H
	Shimizu and J Kucharczyk and M F Wendland and P R Weinstein},
  title = {Early detection of regional cerebral ischemia in cats: {C}omparison
	of diffusion- and {T2}-weighted {MRI} and spectroscopy},
  journal = MRM,
  year = {1990},
  volume = {14},
  pages = {330--346},
  number = {2},
  month = {May},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Moller1997,
  author = {Torsten M{\"o}ller and Raghu Machiraju and Klaus Mueller and Roni
	Yagel},
  title = {Evaluation and Design of Filters Using a {T}aylor Series Expansion},
  journal = TVCG,
  year = {1997},
  volume = {3},
  pages = {184--199},
  number = {2},
  file = {mollerTVCG97EvalAndDesignOfFiltersUsingTaylorSeriesExpansion.pdf:mollerTVCG97EvalAndDesignOfFiltersUsingTaylorSeriesExpansion.pdf:PDF},
  keywords = {filters},
  owner = {gk},
  timestamp = {2008.03.25}
}

@ARTICLE{GLK:Nattkemper2004,
  author = {Tim W. Nattkemper},
  title = {Multivariate image analysis in biomedicine},
  journal = {Journal of Biomedical Informatics},
  year = {2004},
  volume = {37},
  pages = {380--391},
  number = {5},
  month = {Oct.},
  doi = {doi:10.1016/j.jbi.2004.07.010},
  file = {nattkemper04MultivariateImageAnalysisInBiomedicine.pdf:nattkemper04MultivariateImageAnalysisInBiomedicine.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:Neil2006,
  author = {Jeffrey J. Neil and Terrie E. Inder},
  title = {Detection of Wallerian Degeneration in a Newborn by Diffusion Magnetic
	Resonance Imaging ({MRI})},
  journal = {Journal of Child Neurology},
  year = {2006},
  volume = {21},
  pages = {115--118},
  doi = {10.1177/08830738060210021501},
  file = {neil06DetectionOfWallerianDegenerationInANewbornByDiffusionMagnaticResonanceImaging.pdf:neil06DetectionOfWallerianDegenerationInANewbornByDiffusionMagnaticResonanceImaging.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@ARTICLE{GLK:Nickalls1993,
  author = {R W D Nickalls},
  title = {A new approach to solving the cubic: {C}ardan's solution revealed},
  journal = {The Mathematical Gazette},
  year = {1993},
  volume = {77},
  pages = {354--359},
  owner = {gk},
  timestamp = {2008.08.01}
}

@ARTICLE{GLK:Nicolay2001,
  author = {K Nicolay and K P J Braun and R A de~Graaf and R M Dijkhuizen and
	M J Kruiskamp},
  title = {Diffusion {NMR} spectroscopy},
  journal = NMRB,
  year = {2001},
  volume = {14},
  pages = {94--111},
  file = {nicolayNMRB01DiffusionNMRSpectroscopy.pdf:nicolayNMRB01DiffusionNMRSpectroscopy.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Niessen1997,
  author = {W. J. Niessen and J. S. Duncan and M. Nielsen and L. M. J. Florack
	and B. M. ter Haar Romeny and M. A. Viergever},
  title = {A Multiscale Approach to Image Sequence Analysis},
  journal = {Computer Vision and Image Understanding},
  year = {1997},
  volume = {65},
  pages = {259--268},
  number = {2},
  month = {Feb},
  file = {niessen97AMultiscaleApproachToImageSequenceAnalysis.pdf:niessen97AMultiscaleApproachToImageSequenceAnalysis.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:niethammerEMBS06,
  author = {M Niethammer and R {San Jose Estepar} and S Bouix and M Shenton and
	C-F Westin},
  title = {On Diffusion Tensor Estimation},
  booktitle = {Proc. 28th IEEE EMBS},
  year = {2006},
  pages = {2622--2625},
  file = {niethammerEMBS06OnDiffusionTensorEstimation.pdf:niethammerEMBS06OnDiffusionTensorEstimation.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:Nimsky2006b,
  author = {Christopher Nimsky and Oliver Ganslandt and Frank Enders and Dorit
	Merhof and Thilo Hammen and Michael Buchfelder},
  title = {Visualization Strategies for Major White Matter Tracts for Intraoperative
	Use},
  journal = {International Journal of Computer Assisted Radiology and Surgery},
  year = {2006},
  volume = {1},
  pages = {13--22},
  number = {1},
  month = {March},
  doi = {10.1007/s11548-006-0003-2},
  file = {nimsky06VisualizationStrategiesForMajorWhiteMatterTractsForIntraoperativeUse.pdf:nimsky06VisualizationStrategiesForMajorWhiteMatterTractsForIntraoperativeUse.pdf:PDF},
  keywords = {neurosurgery},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Nimsky2006a,
  author = {Christopher Nimsky and Oliver Ganslandt and Rudolf Fahlbusch},
  title = {Implementation of Fiber Tract Navigation},
  journal = {Neurosurgery},
  year = {2006},
  volume = {58},
  pages = {ONS-292--304},
  number = {4},
  month = {April},
  note = {Operative Neurosurgery Supplement 2},
  doi = {10.1227/01.NEU.0000204726.00088.6D},
  file = {nimskyNS06ImplementationOfFiberTractNavigation.pdf:nimskyNS06ImplementationOfFiberTractNavigation.pdf:PDF},
  keywords = {neurosurgery},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Nimsky2005,
  author = {Christopher Nimsky and Oliver Ganslandt and Peter Hastreiter and
	Ruopeng Wang and Thomas Benner and A. Gregory Sorensen and Rudolf
	Fahlbusch},
  title = {Preoperative and Intraoperative Diffusion Tensor Imaging-Based Fiber
	Tracking in Glioma Surgery},
  journal = {Neurosurgery},
  year = {2005},
  volume = {56},
  pages = {130--138},
  number = {1},
  file = {nimskyNS05PreoperativeAndIntraoperativeDiffusionTensorImagingBasedFiberTrackingInGliomaSurgery.pdf:nimskyNS05PreoperativeAndIntraoperativeDiffusionTensorImagingBasedFiberTrackingInGliomaSurgery.pdf:PDF},
  keywords = {neurosurgery},
  owner = {gk},
  timestamp = {2007.09.19}
}

@ARTICLE{GLK:Nimsky2005a,
  author = {Christopher Nimsky and Oliver Ganslandt and Peter Hastreiter and
	Ruopeng Wang and Thomas Benner and A. Gregory Sorensen and Rudolf
	Fahlbusch},
  title = {Intraoperative Diffusion-Tensor {MR} Imaging: {S}hifting of White
	Matter Tracts during Neurosurgical Procedures-- {I}nitial Experience},
  journal = {Radiology},
  year = {2005},
  volume = {234},
  pages = {218--225},
  doi = {10.1148/radiol.2341031984},
  file = {nimsky05IntraoperativeDiffusionTensorMRImagingShiftingOfWhiteMatterTractsDuringNeurosurgicalProceduresInitialExperience.pdf:nimsky05IntraoperativeDiffusionTensorMRImagingShiftingOfWhiteMatterTractsDuringNeurosurgicalProceduresInitialExperience.pdf:PDF},
  keywords = {tumor neurosurgery},
  owner = {gk},
  timestamp = {2008.11.12}
}

@ARTICLE{GLK:Nimsky2006,
  author = {Christopher Nimsky and Oliver Ganslandt and Dorit Merhofa and A.
	Gregory Sorensen and Rudolf Fahlbusch},
  title = {Intraoperative visualization of the pyramidal tract by diffusion-tensor-imaging-based
	fiber tracking},
  journal = NI,
  year = {2006},
  volume = {30},
  pages = {1219--1229},
  number = {4},
  month = {May},
  doi = {doi:10.1016/j.neuroimage.2005.11.001},
  file = {nimskyNI06IntraoperativeVisualizationOfThePyramidalTractByDiffusionTensorImagingBasedFiberTracking.pdf:nimskyNI06IntraoperativeVisualizationOfThePyramidalTractByDiffusionTensorImagingBasedFiberTracking.pdf:PDF},
  keywords = {tumor neurosurgery},
  owner = {gk},
  timestamp = {2007.09.19}
}

@INPROCEEDINGS{GLK:O'Donnell2004,
  author = {L O'Donnell and W E L Grimson and C-F Westin},
  title = {Interface Detection in Diffusion Tensor {MRI}},
  booktitle = MICCAI # { 2004},
  year = {2004},
  pages = {360--367},
  file = {odonnellMICCAI04InterfaceDetectionInDTMRI.pdf:odonnellMICCAI04InterfaceDetectionInDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:O'Donnell2006,
  author = {L O'Donnell and M Kubicki and M E Shenton and M Dreusicke and W E
	L Grimson and C-F Westin},
  title = {A Method for Clustering White Matter Fiber Tracts},
  journal = AJNR,
  year = {2006},
  volume = {27},
  pages = {1032--1036},
  month = {May},
  file = {odonnellAJNR06AMethodForClusteringWhiteMatterFiberTracts.pdf:odonnellAJNR06AMethodForClusteringWhiteMatterFiberTracts.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:O'Donnell2009,
  author = {L. O'Donnell and C. Westin and A. Golby},
  title = {Tract-based morphometry for white matter group analysis},
  journal = NI,
  year = {2009},
  volume = {45},
  pages = {832--844},
  number = {3},
  month = {Apr},
  owner = {gk},
  timestamp = {2009.07.02}
}

@INPROCEEDINGS{GLK:O'Donnell2006a,
  author = {L O'Donnell and C-F Westin},
  title = {High-Dimensional White Matter Atlas Generation and Group Analysis},
  booktitle = MICCAI # { 2006},
  year = {2006},
  series = {Lecture Notes in Computer Science 4191},
  pages = {243--251},
  address = {Copenhagen, Denmark},
  month = {October},
  file = {odonnellMICCAI06HighDimensionalWhiteMatterAtlasGenerationAndGroupAnalysis.pdf:odonnellMICCAI06HighDimensionalWhiteMatterAtlasGenerationAndGroupAnalysis.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Olesen2003,
  author = {Pernille J. Olesen and Zoltan Nagy and Helena Westerberg and Torkel
	Klingberg},
  title = {Combined analysis of {DTI} and {fMRI} data reveals a joint maturation
	of white and grey matter in a fronto-parietal network},
  journal = {Cognitive Brain Research},
  year = {2003},
  volume = {18},
  pages = {48--57},
  number = {1},
  doi = {10.1016/j.cogbrainres.2003.09.003},
  file = {olesen03CombinedAnalysisOfDTIandfMRIdataRevealsAJointMaturationOfWhiteAndGreyMatterInAFrontoParietalNetwork.pdf:olesen03CombinedAnalysisOfDTIandfMRIdataRevealsAJointMaturationOfWhiteAndGreyMatterInAFrontoParietalNetwork.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Pajevic2002,
  author = {S Pajevic and A Aldroubi and P J Basser},
  title = {A Continuous Tensor Field Approximation of Discrete {DT-MRI} Data
	for Extracting Microstructural and Architectural Features of Tissue},
  journal = JMR,
  year = {2002},
  volume = {154},
  pages = {85--100},
  file = {pajevicJMR02ContinuousTensorFieldApproximationofDiscreteDTMRIData_.pdf:pajevicJMR02ContinuousTensorFieldApproximationofDiscreteDTMRIData_.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:Pajevic1999,
  author = {Sinisa Pajevic and Carlo Pierpaoli},
  title = {Color schemes to represent the orientation of anisotropic tissues
	from diffusion tensor data: {A}pplication to white matter fiber tract
	mapping in the human brain},
  journal = MRM,
  year = {1999},
  volume = {42},
  pages = {526--540},
  number = {3},
  file = {pajevic99ColorSchemesToRepresentOrientationOfAnisotropicTissuesFromDiffusionTensorData.pdf:pajevic99ColorSchemesToRepresentOrientationOfAnisotropicTissuesFromDiffusionTensorData.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Pang1994,
  author = {Alex Pang and Naim Alper},
  title = {{Mix\&Match}: {A} Construction Kit for Visualization},
  booktitle = VIS,
  year = {1994},
  pages = {302--309},
  file = {:Users/gk/lit/pdf/pangVIS04Mix&MatchAConstructionKitForVisualization.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.28}
}

@INPROCEEDINGS{GLK:Pang1993,
  author = {Alex Pang and Kyle Smith},
  title = {Spray Rendering: {V}isualization Using Smart Particles},
  booktitle = VIS,
  year = {1993},
  pages = {283--290},
  file = {:Users/gk/lit/pdf/pangVIS03SprayRenderingVisualizationUsingSmartParticles.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.28}
}

@ARTICLE{GLK:parkNeuroimage03,
  author = {Hae-Jeong Park and Marek Kubicki and Martha E. Shenton and Alexandre
	Guimond and Robert W. McCarley and Stephan E. Maier and Ron Kikinis
	and Ferenc A. Jolesz and Carl-Fredrik Westin},
  title = {Spatial Normalization of Diffusion Tensor {MRI} Using Multiple Channels},
  journal = NI,
  year = {2003},
  volume = {20},
  pages = {1995--2009},
  number = {4},
  file = {parkNeuroImage03SpatialNormalizationOfDiffusionTensorMRIUsingMultipleChannels.pdf:parkNeuroImage03SpatialNormalizationOfDiffusionTensorMRIUsingMultipleChannels.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Parker2003,
  author = {G. J. Parker and H A Haroon and C A Wheeler-Kingshott},
  title = {A framework for a streamline-based probabilistic index of connectivity
	{(PICo)} using a structural interpretation of {MRI} diffusion measurements},
  journal = JMRI,
  year = {2003},
  volume = {18},
  pages = {242--254},
  owner = {gk},
  timestamp = {2009.04.21}
}

@ARTICLE{GLK:Parker1999,
  author = {Steven Parker and Michael Parker and Yarden Livnat and Peter-Pike
	Sloan and Charles Hansen and Peter Shirley},
  title = {Interactive Ray Tracing for Volume Visualization},
  journal = TVCG,
  year = {1999},
  volume = {5},
  pages = {238--250},
  number = {3},
  address = {Los Alamitos, CA, USA},
  doi = {10.1109/2945.795215},
  file = {:Users/gk/lit/pdf/parkerTVCG99InteractiveRayTracingForVolumeVisualization.pdf:PDF},
  issn = {1077-2626},
  owner = {gk},
  publisher = {IEEE Computer Society},
  timestamp = {2009.07.03}
}

@ARTICLE{GLK:Pauly2006,
  author = {Mark Pauly and Leif P Kobbelt and Markus Gross},
  title = {Point-Based Multiscale Surface Representation},
  journal = TOG,
  year = {2006},
  volume = {25},
  pages = {177--193},
  number = {2},
  month = {April},
  file = {paulyTOG06PointBasedMultiscaleSurfaceRepresentation.pdf:paulyTOG06PointBasedMultiscaleSurfaceRepresentation.pdf:PDF},
  keywords = {point sets, scale-space},
  owner = {gk},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Peikert1999,
  author = {R Peikert and M Roth},
  title = {The {"}Parallel Vectors{"} Operator - A Vector Field Visualization
	Primitive},
  booktitle = VIS,
  year = {1999},
  pages = {263--270},
  file = {peikertVIS99TheParallelVectorsOperatorAVectorFieldVisualizationPrimitive.pdf:peikertVIS99TheParallelVectorsOperatorAVectorFieldVisualizationPrimitive.pdf:PDF},
  owner = {gk},
  poges = {263-270},
  timestamp = {2007.07.08}
}

@INPROCEEDINGS{GLK:Peikert2008,
  author = {Ronald Peikert and Filip Sadlo},
  title = {Height Ridge Computation and Filtering for Visualization},
  booktitle = {Proc. Pacific Vis},
  year = {2008},
  editor = {Issei Fujishiro and Hua Li and Kwan-Liu Ma},
  pages = {119--126},
  month = {March},
  file = {peikert08HeightRidgeComputationAndFilteringForVisualization.pdf:peikert08HeightRidgeComputationAndFilteringForVisualization.pdf:PDF},
  owner = {gk},
  review = {interesting- notes that eberly's and lindeberg's definition of ridge
	is the same except for which eval/evecs are selected, so they find
	points where the gradient is perp to some number of evecs, and then
	filter them according to the eberly or lindeberg test.
	
	
	claims that the points that are removed by the filters are what Damon
	(GLK:Damon1999) refers to as "connector lines"
	
	
	has a neat counter example in appendix to koenderink's (GLK:Koenderink1993)
	"curved gutter" (watershed ridges that aren't height ridges, I think)
	- height ridges that are intuitively ridges, which aren't watershed
	ridges
	
	
	uses tests for whether a point is a "raw height ridge" (gradient/evec
	orthogonality, evals unordered) that I think are basically re-expressions
	of the continuous formulations from eberly's book.
	
	
	pre-computed gradient and Hessian*gradient on nodes, and tries to
	find where they are perp, to find ridge lines. no analytic interpolation},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Pelt2008,
  author = {R F P van Pelt and A Vilanova and H M M van de Wetering},
  title = {{GPU}-based particle systems for illustrative volume rendering},
  booktitle = {Proc. IEEE/EG Intl. Symp. on Volume and Point-Based Graphics},
  year = {2008},
  pages = {89--96},
  month = {Aug},
  abstract = {Illustrative techniques are generally applied to produce stylized
	renderings. Various illustrative styles have been applied to volumetric
	data sets, producing clearer images and effectively conveying visual
	information. We adopt user-configurable particle systems to produce
	stylized renderings from the volume data, imitating traditional pen-and-ink
	drawings. In the following, we present an interactive GPU-based illustrative
	framework, called VolFliesGPU, for rendering volume data, exploiting
	parallelism in both graphics hardware and particle systems. We achieve
	real-time interaction and prompt parametrization of the illustrative
	styles, using an intuitive GPGPU paradigm that delivers the computational
	power to drive our particle system and visualization algorithms.},
  file = {:Users/gk/lit/pdf/vanPelt08GPUBasedParticleSystemsForIllustrativeVolumeRendering.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.28}
}

@TECHREPORT{GLK:Pennec2004,
  author = {Xavier Pennec},
  title = {Probabilities and Statistics on {R}iemannian Manifolds: {A} Geometric
	Approach},
  institution = {INRIA, Sophia Antipolis},
  year = {2004},
  number = {5093},
  month = {January},
  file = {pennecTR04ProbabilitiesAndStatisticsOnRiemannianManifoldsAGeometricApproach.pdf:pennecTR04ProbabilitiesAndStatisticsOnRiemannianManifoldsAGeometricApproach.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@INPROCEEDINGS{GLK:Pennec1999,
  author = {Xavier Pennec},
  title = {Probabilities and Statistics on {R}iemannian Manifolds: {B}asic Tools
	for Geometric Measurements},
  booktitle = {Proceedings of Nonlinear Signal and Image Processing (NSIP'99)},
  year = {1999},
  volume = {1},
  pages = {194--198},
  month = {June},
  file = {pennec99ProbabilitiesAndStatisticsOnRiemannianManifoldsBasicToolsForGeometricMeasurements.pdf:pennec99ProbabilitiesAndStatisticsOnRiemannianManifoldsBasicToolsForGeometricMeasurements.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:pennec06,
  author = {Xavier Pennec and Pierre Fillard and Nicholas Ayache},
  title = {A Riemannian Framework for Tensor Computing},
  journal = IJCV,
  year = {2006},
  volume = {66},
  pages = {41--66},
  number = {1},
  month = {January},
  file = {pennecIJCV06ARiemannianFrameworkForTensorComputing.pdf:pennecIJCV06ARiemannianFrameworkForTensorComputing.pdf:PDF},
  owner = {gk},
  review = {uses sqrt(2) scaling for off-diagonals
	
	
	says its same as lenglet (and I think same as fletcher)
	
	
	claims smoother rotation of evecs
	
	
	swelling: if det has a maxima, the probabilities have changed},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:perona90,
  author = {Pietro Perona and Jitendra Malik},
  title = {Scale-Space and Edge Detection Using Anisotropy Diffusion},
  journal = PAMI,
  year = {1990},
  volume = {12},
  pages = {629--639},
  number = {7},
  file = {peronaPAMI90ScaleSpaceAndEdgeDetectionUsingAnisotropicDiffusion.pdf:peronaPAMI90ScaleSpaceAndEdgeDetectionUsingAnisotropicDiffusion.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:Petrovic2007,
  author = {Vid Petrovic and James Fallon and Falko Kuester},
  title = {Visualizing Whole-Brain {DTI} Tractography with {GPU}-based Tuboids
	and {LoD} Management},
  journal = TVCG,
  year = {2007},
  volume = {13},
  pages = {1488--1495},
  number = {6},
  doi = {10.1109/TVCG.2007.70532},
  file = {petrovicTVCG07VisualizingWholeBrainDTITractographyWithGPUBasedTuboidsAndLoDManagement.pdf:petrovicTVCG07VisualizingWholeBrainDTITractographyWithGPUBasedTuboidsAndLoDManagement.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:Pfister2001,
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@ARTICLE{GLK:Pizer2003,
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  owner = {gk},
  timestamp = {2007.12.11}
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@ARTICLE{GLK:Qazi2009,
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	and S Whalen and AJ Golby and C-F Westin},
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  timestamp = {2008.05.02}
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  title = {High-Level User Interfaces for Transfer Function Design with Semantics},
  journal = TVCG # { (Proc. IEEE Visualization)},
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  pages = {1021--1028},
  number = {5},
  file = {salamaVIS06HighLevelUserInterfacesForTransferFunctionDesignWithSemantics.pdf:salamaVIS06HighLevelUserInterfacesForTransferFunctionDesignWithSemantics.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Rezk-Salama2006,
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  title = {Opacity Peeling for Direct Volume Rendering},
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  pages = {597--606},
  number = {3},
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@ARTICLE{GLK:Rieger1997,
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@INPROCEEDINGS{GLK:Ropinski2007,
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@INPROCEEDINGS{GLK:Ropinski2008,
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@ARTICLE{GLK:rose00,
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@ARTICLE{GLK:Rosenthal2008,
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@ARTICLE{GLK:Rouw2007,
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}

@INPROCEEDINGS{GLK:RoSler2006,
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@ARTICLE{GLK:Sadlo2007,
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@ARTICLE{GLK:Salden1998,
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}

@ARTICLE{GLK:Salzbrunn2006,
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  timestamp = {2008.01.21}
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@INPROCEEDINGS{GLK:Sapiro1996,
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@ARTICLE{GLK:Savadjieva2008,
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  keywords = {hardi},
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@INPROCEEDINGS{GLK:Savadjiev2009,
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  booktitle = MICCAI,
  year = {2009},
  pages = {(to appear)},
  month = {September},
  owner = {gk},
  timestamp = {2009.09.17}
}

@ARTICLE{GLK:Savoiardo1992,
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@ARTICLE{GLK:Schmahmann2007,
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@INPROCEEDINGS{GLK:Schneider2003,
  author = {Bernhard Schneider},
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@ARTICLE{GLK:Schonberg2006,
  author = {Tom Schonberg and Pazit Pianka and Talma Hendler and Ofer Pasternak
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@ARTICLE{GLK:Schreiner2006,
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@INPROCEEDINGS{GLK:Schultz06,
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  pages = {455--464},
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  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Schultz2008,
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}

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  owner = {gk},
  timestamp = {2009.06.29}
}

@ARTICLE{GLK:Schultz2007,
  author = {Thomas Schultz and Holger Theisel and Hans-Peter Seidel},
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  owner = {gk},
  timestamp = {2008.01.21}
}

@ARTICLE{GLK:scollan98,
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  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Seidel2004,
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  keywords = {ridges},
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  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Serrat2000,
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  keywords = {creases},
  owner = {gk},
  timestamp = {2008.04.03}
}

@INPROCEEDINGS{GLK:shen06,
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  title = {Analytical Expressions for Noise Propagation in Diffusion Tensor
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  file = {shenISMRM06AnalyticalExpressionsForNoisePropagationInDiffusionTensorImaging.pdf:shenISMRM06AnalyticalExpressionsForNoisePropagationInDiffusionTensorImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:Sherbondy2005,
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  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Sherbondy2008,
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  owner = {gk},
  timestamp = {2008.10.15}
}

@INPROCEEDINGS{GLK:Shimada1995,
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  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:Shimada2000,
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  keywords = {particles},
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}

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  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@BOOK{GLK:Shreiner2004,
  title = {OpenGL Programming Guide},
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@INPROCEEDINGS{GLK:Sigg2006,
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}

@ARTICLE{GLK:Simon2000,
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  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@ARTICLE{GLK:Sluimer2006,
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	Z Cader and P M Matthews and T E J Behrens},
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  owner = {gk},
  timestamp = {2007.07.08}
}

@TECHREPORT{GLK:Smith2005,
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	T E Nichols and C E Mackay and K E Watkins and O Ciccarelli and M
	Z Cader and P M Matthews and T E J Behrens},
  title = {Tract-based spatial statistics: {V}oxelwise analysis of multi-subject
	diffusion data},
  institution = {Oxford University Centre for Functional MRI of the Brain (FMRIB)},
  year = {2005},
  number = {TR05SS1},
  file = {smithTR2006TractBasedSpatialStatisticsVoxelwiseAnalysisOfMultiSubjectDiffusionData.pdf:smithTR2006TractBasedSpatialStatisticsVoxelwiseAnalysisOfMultiSubjectDiffusionData.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.08}
}

@ARTICLE{GLK:Smits2007,
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	in the Preoperative Assessment of the Corticospinal Tract in Patients
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  keywords = {neurosurgery tumor},
  owner = {gk},
  timestamp = {2008.11.12}
}

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  keywords = {vaina},
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  timestamp = {2007.09.17}
}

@INPROCEEDINGS{GLK:Staal1999,
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  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Stadlbauer2007,
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	Salomonowitz and Thilo Hammen and Michael Buchfelder and Ewald Moser
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  keywords = {neurosurgery tumor},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:Stejskal1965,
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  journal = TMI,
  year = {1999},
  volume = {18},
  pages = {1025--1034},
  number = {10},
  comment = {Figure 4 is the barycentric shape space!!},
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  keywords = {barycentric},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Stevens1946,
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  owner = {gk},
  timestamp = {2009.06.26}
}

@ARTICLE{GLK:Stieltjes2006,
  author = {Bram Stieltjes and Mathias Schl\"{u}ter and Bernd Didinger andMarc-Andr\'{e}
	Weber and Horst K. Hahn and Peter Parzer and Jan Rexilius and Olaf
	Konrad-Verse and Heinz-Otto Peitgen and Marco Essig},
  title = {Diffusion tensor imaging in primary brain tumors: {R}eproducible
	quantitative analysis of corpus callosum infiltration and contralateral
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  keywords = {tumor},
  owner = {gk},
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}

@INPROCEEDINGS{GLK:Stompel2002,
  author = {Aleksander Stompel and Eric B. Lum and Kwan-Liu Ma},
  title = {Feature-Enhanced Visualization of Multidimensional, Multivariate
	Volume Data using Non-Photorealistic Rendering Techniques},
  booktitle = {Proc. Pacific Graphics},
  year = {2002},
  pages = {1--8},
  file = {stompel02VisualizationOfMultidimensionalMultivariateVolumeDataUsingHardwareAcceleratedNPRTechniques.pdf:stompel02VisualizationOfMultidimensionalMultivariateVolumeDataUsingHardwareAcceleratedNPRTechniques.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:Stroila2008,
  author = {Matei Stroila and Elmar Eisemann and John C Hart},
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  journal = TVCG,
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  volume = {14},
  pages = {135--145},
  number = {1},
  month = {Jan--Feb},
  doi = {10.1109/TVCG.2007.1058},
  file = {stroilaTVCG08ClipArtRenderingOfSmoothIsosurfaces.pdf:stroilaTVCG08ClipArtRenderingOfSmoothIsosurfaces.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Styner2003,
  author = {M Styner and J A Lieberman and G Gerig},
  title = {Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia},
  booktitle = MICCAI # { 2003},
  year = {2003},
  pages = {464--471},
  doi = {10.1007/b93811},
  file = {stynerMICCAI03BoundaryAndMedialShapeAnalysisOfTheHippocampusInSchizophrenia.pdf:stynerMICCAI03BoundaryAndMedialShapeAnalysisOfTheHippocampusInSchizophrenia.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Styner2004,
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  file = {stynerMedIA04BoundaryAndMedialShapeAnalysisOfTheHippocampusInSchizophrenia.pdf:stynerMedIA04BoundaryAndMedialShapeAnalysisOfTheHippocampusInSchizophrenia.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Su2005,
  author = {Wen Y Su and John C Hart},
  title = {A Programmable Particle System Framework For Shape Modeling},
  booktitle = {Proc. Shape Modeling and Applications (SMI)},
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  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:Svakhine2005,
  author = {Nikolai Svakhine and David S. Ebert and Don Stredney},
  title = {Illustration Motifs for Effective Medical Volume Illustration},
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  number = {3},
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  file = {svakhineCGnA05IllustrationMotifsForEffectiveMedicalVolumeIllustration.pdf:svakhineCGnA05IllustrationMotifsForEffectiveMedicalVolumeIllustration.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.20}
}

@ARTICLE{GLK:Szeliski1992,
  author = {Richard Szeliski and David Tonnesen},
  title = {Surface Modeling with Oriented Particle Systems},
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  number = {2},
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  keywords = {particles},
  owner = {gk},
  review = {mentions that we could call these oriented particles a "surfel"
	
	
	basic idea is that you particles to mimic surfaces by making their
	potential fields be oriented (non-rotate-symm). Includes ideas for
	co-normality (for planar) and co-spherical.
	
	
	considers k-d trees for efficiency
	
	
	Section 4.2 mentions the idea of caching the list of neighbors!},
  timestamp = {2008.03.21},
  url = {http://citeseer.ist.psu.edu/szeliski91surface.html}
}

@TECHREPORT{GLK:Szeliski1991,
  author = {Richard Szeliski and David Tonnesen},
  title = {Surface Modeling with Oriented Particle Systems},
  institution = {Digital Equipment Corporation, Cambridge Research Lab},
  year = {1991},
  number = {CRL 91/14},
  address = {Cambridge, Massachusetts},
  month = {December},
  file = {szeliski91SurfaceModelingWithOrientedParticleSystems.pdf:szeliski91SurfaceModelingWithOrientedParticleSystems.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.26}
}

@INPROCEEDINGS{GLK:Szeliski1993,
  author = {Richard Szeliski and David Tonnesen and Demetri Terzopoulos},
  title = {Modeling surfaces of arbitrary topology with dynamic particles},
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  owner = {gk},
  timestamp = {2008.03.25}
}

@INPROCEEDINGS{GLK:Talos2003,
  author = {Ion-Florin Talos and Lauren O'Donnell and Carl-Fredrik Westin and
	Simon K. Warfield and William Wells III and Seung-Schik Yoo and Lawrence
	P. Panych and Alexandra Golby and Hatsuho Mamata and Stefan S. Maier
	and Peter Ratiu and Charles R. G. Guttmann and Peter M. Black and
	Ferenc A. Jolesz and Ron Kikinis},
  title = {Diffusion Tensor and Functional {MRI} Fusion with Anatomical {MRI}
	for Image-Guided Neurosurgery},
  booktitle = MICCAI # { 2003},
  year = {2003},
  pages = {407--415},
  file = {talosMICCAI03DiffusionTensorAndFunctionalMRIFusionWithAnatomicalMRIForImageGuidedNeurosurgery.pdf:talosMICCAI03DiffusionTensorAndFunctionalMRIFusionWithAnatomicalMRIForImageGuidedNeurosurgery.pdf:PDF},
  keywords = {qazi neurosurgery},
  owner = {gk},
  timestamp = {2007.09.19}
}

@ARTICLE{GLK:Talos2007,
  author = {Ion-Florin Talos and Kelly H. Zou and Ron Kikinis and Ferenc A. Jolesz},
  title = {Volumetric Assessment of Tumor Infiltration of Adjacent White Matter
	Based on Anatomic {MRI} and Diffusion Tensor Tractography},
  journal = {Academic Radiology},
  year = {2007},
  volume = {14},
  pages = {431-436},
  number = {4},
  month = {April},
  doi = {doi:10.1016/j.acra.2007.01.033},
  file = {talosAcadRad07VolumetricAssessmentOfTumorInfiltrationOfAdjacentWhiteMatterBasedOnAnatomicMRIAndDiffusionTensorTractography.pdf:talosAcadRad07VolumetricAssessmentOfTumorInfiltrationOfAdjacentWhiteMatterBasedOnAnatomicMRIAndDiffusionTensorTractography.pdf:PDF},
  keywords = {tumor},
  owner = {gk},
  timestamp = {2007.09.19}
}

@INPROCEEDINGS{GLK:Tamburo2000,
  author = {R J Tamburo and G D Stetten},
  title = {Gradient-oriented profiles for unsupervised boundary classification},
  booktitle = {Proceedings 29th IEEE Applied Imagery Pattern Recognition Workshop},
  year = {2000},
  volume = {29},
  pages = {206--212},
  month = {Oct},
  doi = {10.1109/AIPRW.2000.953627},
  file = {tamburo00GradientOrientedProfilesForUnsupervizedBoundaryClassification.pdf:tamburo00GradientOrientedProfilesForUnsupervizedBoundaryClassification.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:Tappenbeck2006,
  author = {Andreas Tappenbeck and Bernhard Preim and Volker Dicken},
  title = {Distance-based transfer function design: Specification Methods and
	Applications},
  booktitle = SimVis,
  year = {2006},
  pages = {259--274},
  file = {tappenbeck06DistanceBasedTransferFunctionDesignSpecificationMethodsAndApplications.pdf:tappenbeck06DistanceBasedTransferFunctionDesignSpecificationMethodsAndApplications.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.20}
}

@ARTICLE{GLK:Taylor2002,
  author = {Russell Taylor},
  title = {Visualizing Multiple Fields on the Same Surface},
  journal = CGnA,
  year = {2002},
  volume = {22},
  pages = {6--10},
  number = {3},
  month = {May/June},
  file = {taylor02VisualizingMultipleFieldsOnTheSameSurface.pdf:taylor02VisualizingMultipleFieldsOnTheSameSurface.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.02}
}

@ARTICLE{GLK:taylor04,
  author = {Warren D. Taylor and Edward Hsu and K Ranga Rama Krishnan and James
	R. MacFall},
  title = {Diffusion Tensor Imaging: Background, Potential, and Utility in Psychiatric
	Research},
  journal = {Biological Psychiatry},
  year = {2004},
  volume = {55},
  pages = {201--207},
  file = {taylor04DiffusionTensorImagingBackgroundPotentialAndUtilityInPsychiatricResearch.pdf:taylor04DiffusionTensorImagingBackgroundPotentialAndUtilityInPsychiatricResearch.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@BOOKLET{GLK:Teeter2009,
  title = {The Life of Meresamun: A Temple Singer in Ancient Egypt},
  author = {Emily Teeter and Janet H. Johnson},
  address = {University Of Chicago},
  year = {2009},
  file = {:Users/gk/lit/pdf/teeter09TheLifeOfMeresamun.pdf:PDF},
  owner = {gk},
  timestamp = {2009.10.05}
}

@INPROCEEDINGS{GLK:Tenginakai2001,
  author = {Shivaraj Tenginakai and Jinho Lee and Raghu Machiraju},
  title = {Salient iso-surface detection with model-independent statistical
	signatures},
  booktitle = VIS,
  year = {2001},
  pages = {231--238},
  owner = {gk},
  timestamp = {2008.01.18}
}

@INPROCEEDINGS{GLK:Tenginakai2002,
  author = {Shivaraj Tenginakai and Raghu Machiraju},
  title = {Statistical computation of salient iso-values},
  booktitle = {Proceedings of the Symposium on Data Visualisation},
  year = {2002},
  pages = {19--24},
  owner = {gk},
  timestamp = {2008.01.18}
}

@ARTICLE{GLK:Terzopoulos1988,
  author = {Demetri Terzopoulos and Andrew Witkin and Michael Kass},
  title = {Constraints On Deformable Models: {R}ecovering {3D} Shape And Nonrigid
	Motion},
  journal = {Artificial Intelligence},
  year = {1988},
  volume = {36},
  pages = {91--123},
  number = {1},
  file = {terzopoulus88ConstraintsOnDeformableModelsRecovering3DShapeAndNonrigidMotion.pdf:terzopoulus88ConstraintsOnDeformableModelsRecovering3DShapeAndNonrigidMotion.pdf:PDF},
  keywords = {contours},
  owner = {gk},
  timestamp = {2008.03.22}
}

@TECHREPORT{GLK:Thirion1993,
  author = {J-P Thirion and A Gourdon},
  title = {The 3D Marching Lines Algorithm: new results and proofs},
  institution = INRIA # { (Rocquencourt)},
  year = {1993},
  number = {1881-2},
  month = {April},
  file = {thirion93TheMarchingLinesAlgorithmNewResultsAndProofs.pdf:thirion93TheMarchingLinesAlgorithmNewResultsAndProofs.pdf:PDF},
  keywords = {ridges},
  owner = {gk},
  timestamp = {2008.04.05}
}

@TECHREPORT{GLK:Thirion1992,
  author = {J-P Thirion and A Gourdon},
  title = {The 3D Marching Lines Algorithm and Its Application to Crest Lines
	Extraction},
  institution = INRIA # { (Rocquencourt)},
  year = {1992},
  number = {1672},
  month = {May},
  file = {thirionTR92The3DMarchingLinesAlgorithmAndItsApplicationToCrestLinesExtraction.pdf:thirionTR92The3DMarchingLinesAlgorithmAndItsApplicationToCrestLinesExtraction.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:thomalla04,
  author = {G{\"o}tz Thomalla and Volkmar Glauche and Martin A. Koch and Christian
	Beaulieu and Cornelius Weiller and Joachim R{\"o}ther},
  title = {Diffusion tensor imaging detects early {W}allerian degeneration of
	the pyramidal tract after ischemic stroke},
  journal = NI,
  year = {2004},
  volume = {22},
  pages = {1767--1774},
  number = {4},
  month = {August},
  file = {thomallaNEUROIMAGE04DiffusionTensorImagingDetectsEarlyWallerianDegenerationOfThePyramidalTractAfterIschemicStroke.pdf:thomallaNEUROIMAGE04DiffusionTensorImagingDetectsEarlyWallerianDegenerationOfThePyramidalTractAfterIschemicStroke.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Tricoche2004,
  author = {X Tricoche and C Garth and G Kindlmann and E Deines and G Scheuermann
	and M Ruetten and C Hansen},
  title = {Visualization of Intricate Flow Structures for Vortex Breakdown Analysis},
  booktitle = VIS # { 2004},
  year = {2004},
  pages = {187--192},
  month = {October},
  owner = {gk},
  timestamp = {2007.12.11}
}

@ARTICLE{GLK:Tricoche2008,
  author = {Xavier Tricoche and Gordon Kindlmann and Carl-Fredrik Westin},
  title = {Invariant Crease Lines for Topological and Structural Analysis of
	Tensor Fields},
  journal = TVCG,
  year = {2008},
  volume = {14},
  pages = {1627--1634},
  number = {6},
  doi = {10.1109/TVCG.2008.148},
  file = {:Users/gk/lit/pdf/tricocheVIS08InvariantCreaseLinesForTopologicalAndStructuralAnalysisOfTensorFields.pdf:PDF},
  owner = {gk},
  timestamp = {2008.12.06}
}

@INPROCEEDINGS{GLK:tschump03b,
  author = {D Tschumperl{\'e} and R Deriche},
  title = {{DT-MRI} Images : {E}stimation, Regularization and Application},
  booktitle = {Proceedings EUROCAST},
  year = {2003},
  series = {Lecture Notes in Computer Science 2809},
  pages = {530--541},
  publisher = {Springer-Verlag},
  file = {tschumperle03DT-MRIImagesEstimationRegularizationAndApplication.pdf:tschumperle03DT-MRIImagesEstimationRegularizationAndApplication.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:TuchMRM04,
  author = {David S. Tuch},
  title = {Q-Ball Imaging},
  journal = MRM,
  year = {2004},
  volume = {52},
  pages = {1358--1372},
  file = {tuchMRM04QBallImaging.pdf:tuchMRM04QBallImaging.pdf:PDF},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.08.03}
}

@PHDTHESIS{GLK:Tuch2002,
  author = {David Solomon Tuch},
  title = {Diffusion MRI of Complex Tissue Structure},
  school = {Massachusetts Institute Of Technology},
  year = {2002},
  month = {January},
  file = {tuchPHD02DiffusionMRIofComplexTissueStructure.pdf:tuchPHD02DiffusionMRIofComplexTissueStructure.pdf:PDF},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:tuch02,
  author = {David S. Tuch and Timothy G. Reese and Mette R. Wiegell and Nikos
	Makris and John W. Belliveau and Van J. Wedeen},
  title = {High Angular Resolution Diffusion Imaging Reveals Intravoxel White
	Matter Fiber Heterogeneity},
  journal = MRM,
  year = {2002},
  volume = {48},
  pages = {577--582},
  file = {tuchMRM02HighAngularResolutionDiffusionImagingRevealsIntravoxelWhiteMatterFiberHeterogeneity.pdf:tuchMRM02HighAngularResolutionDiffusionImagingRevealsIntravoxelWhiteMatterFiberHeterogeneity.pdf:PDF},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.07.16}
}

@ARTICLE{GLK:TuchNeuron03,
  author = {David S. Tuch and Timothy G. Reese and Mette R. Wiegell and Van J.
	Wedeen},
  title = {Diffusion {MRI} of Complex Neural Architecture},
  journal = {Neuron},
  year = {2003},
  volume = {40},
  pages = {885--895},
  file = {tuchNEURON03DiffusionMRIofComplexNeuralArchitecture.pdf:tuchNEURON03DiffusionMRIofComplexNeuralArchitecture.pdf:PDF},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.08.03}
}

@ARTICLE{GLK:Tuch2005,
  author = {D S Tuch and D H Salat and J J Wisco and A K Zaleta and N D Hevelone
	and H D Rosas},
  title = {Choice reaction time performance correlates with diffusion anisotropy
	in white matter pathways supporting visuospatial attention},
  journal = PNAS,
  year = {2005},
  volume = {102},
  pages = {12212--12217},
  number = {34},
  file = {tuchPNAS05ChoiceReactionTimePerformanceCorrelatesWithDiffusionAnisotropyInWhiteMatterPathwaysSupportingVisuospatialAttention.pdf:tuchPNAS05ChoiceReactionTimePerformanceCorrelatesWithDiffusionAnisotropyInWhiteMatterPathwaysSupportingVisuospatialAttention.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@INPROCEEDINGS{GLK:tuch99,
  author = {D S Tuch and R M Weisskoff and J W Belliveau and V J Wedeen},
  title = {High Angular Resolution Diffusion Imaging of the Human Brain},
  booktitle = ISMRM # { 1999},
  year = {1999},
  pages = {321},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Tuch2005a,
  author = {David S. Tuch and Jonathan J. Wisco and Mark H. Khachaturian and
	Leeland B. Ekstrom Rolf K{\"o}tter4 and Wim Vanduffel},
  title = {Q-ball imaging of macaque white matter architecture},
  journal = {Philosophical Transactions of The Royal Society, B},
  year = {2005},
  volume = {360},
  pages = {869--879},
  doi = {doi:10.1098/rstb.2005.1651},
  file = {tuch05QBallImagingOfMacaqueWhiteMatterArchitecture.pdf:tuch05QBallImagingOfMacaqueWhiteMatterArchitecture.pdf:PDF},
  keywords = {post-tensor},
  owner = {gk},
  timestamp = {2007.08.03}
}

@ARTICLE{GLK:Turk1992,
  author = {Greg Turk},
  title = {Re-{T}iling Polygonal Surfaces},
  journal = {Computer Graphics},
  year = {1992},
  volume = {26},
  pages = {55--64},
  number = {2},
  month = {July},
  note = {(Proc. SIGGRAPH 92)},
  file = {turk92RetilingPolygonalSurfaces.pdf:turk92RetilingPolygonalSurfaces.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  review = {uses particle repulsion with force that decays linearly, and eventually
	hits zero ==> mentions that neighbor search can be made constant-time
	by putting particles into a 3-D grid data structure
	
	
	does a curvature-dependent sampling: a radius of curvature is computed
	from the original triangulation, then each particle gets a radius
	proportional to the local radius of curvature},
  timestamp = {2008.03.25}
}

@ARTICLE{GLK:Turk1991,
  author = {Greg Turk},
  title = {Generating Textures on Arbitrary Surfaces Using Reaction-Diffusion},
  journal = {Computer Graphics},
  year = {1991},
  volume = {25},
  pages = {289--298},
  number = {4},
  month = {July},
  note = {(Proc. SIGGRAPH 91)},
  file = {turkSIGGRAPH91GeneratingTexturesOnArbitrarySurfacesUsingReactionDiffusion.pdf:turkSIGGRAPH91GeneratingTexturesOnArbitrarySurfacesUsingReactionDiffusion.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.25}
}

@INPROCEEDINGS{GLK:Tzeng2003,
  author = {Fan-Yin Tzeng and Eric B. Lum and Kwan-Liu Ma},
  title = {A Novel Interface for Higher-Dimensional Classification of Volume
	Data},
  booktitle = VIS,
  year = {2003},
  pages = {505--512},
  month = {October},
  file = {tzengVIS03ANovelInterfaceForHigherDimensionalClassificationOfVolumeData.pdf:tzengVIS03ANovelInterfaceForHigherDimensionalClassificationOfVolumeData.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.18}
}

@ARTICLE{GLK:Uchino2004,
  author = {A. Uchino and A. Sawada and Y. Takase and R. Egashira and S. Kudo},
  title = {Transient detection of early wallerian degeneration on diffusion-weighted
	{MRI} after an acute cerebrovascular accident},
  journal = {Neuroradiology},
  year = {2004},
  volume = {46},
  pages = {183--188},
  doi = {10.1007/s00234-003-1159-x},
  file = {uchinoNeuroradiology04TransientDetectionOfEarlyWallerianDegenerationOnDiffusionWeightedMRIAfterAnAcuteCerebrovascularAccident.pdf:uchinoNeuroradiology04TransientDetectionOfEarlyWallerianDegenerationOnDiffusionWeightedMRIAfterAnAcuteCerebrovascularAccident.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@ARTICLE{GLK:ulug99,
  author = {A M Ulu\u{g} and P C M van Zijl},
  title = {Orientation-Independent Diffusion Imaging Without Tensor Diagonalization:
	{A}nisotropy Definitions Based on Physical Attributes of the Diffusion
	Ellipsoid},
  journal = JMRI,
  year = {1999},
  volume = {9},
  pages = {804--813},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:unser00,
  author = {M. Unser},
  title = {Sampling---50 {Y}ears After {S}hannon},
  journal = {Proceedings of the {IEEE}},
  year = {2000},
  volume = {88},
  pages = {569--587},
  number = {4},
  month = {April},
  file = {:Users/gk/lit/pdf/unser00Sampling50YearsAfterShannon.pdf:PDF},
  owner = {gk},
  timestamp = {2009.12.16},
  url = {http://bigwww.epfl.ch/publications/unser0001.html}
}

@ARTICLE{GLK:unser93a,
  author = {Michael Unser and Akram Aldroubi and Murray Eden},
  title = {B-{S}pline Signal Processing: {P}art {I}--{T}heory},
  journal = {IEEE Transactions on Signal Processing},
  year = {1993},
  volume = {41},
  pages = {821--833},
  number = {2},
  month = {February},
  file = {unserTSP93BSplineSignalProcessingPartITheory.pdf:unserTSP93BSplineSignalProcessingPartITheory.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:unser93b,
  author = {M Unser and A Aldroubi and M Eden},
  title = {B-{S}pline Signal Processing: {P}art {II}--{E}fficient Design and
	Applications},
  journal = {IEEE Transactions on Signal Processing},
  year = {1993},
  volume = {41},
  pages = {834--848},
  number = {2},
  month = {February},
  file = {unserTSP93BSplineSignalProcessingPartIIEfficientDesignAndApplications.pdf:unserTSP93BSplineSignalProcessingPartIIEfficientDesignAndApplications.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Vasquez2008a,
  author = {Sergio X. Vasquez and Mark S. Hansen and Ali N. Bahadur and Matthew
	F. Hockin and Gordon L. Kindlmann and Lisa Nevel and Isabel Q. Wu
	and David J. Grunwald and David M. Weinstein and Greg M. Jones and
	Christopher R. Johnson and John L. Vandeberg and Mario R. Capecchi
	and Charles Keller},
  title = {Optimization of Volumetric Computed Tomography for Skeletal Analysis
	of Model Genetic Organisms},
  journal = {The Anatomical Record},
  year = {2008},
  volume = {291},
  pages = {475--487},
  number = {5},
  doi = {10.1002/ar.20670},
  file = {vasquez08OptimizationOfVolumetricComputedTomographyForSkeletalAnalysisOfModelGeneticOrganisms.pdf:vasquez08OptimizationOfVolumetricComputedTomographyForSkeletalAnalysisOfModelGeneticOrganisms.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.11}
}

@ARTICLE{GLK:Vasquez2008,
  author = {Sergio X. Vasquez and Mark S. Hansen and Ali N. Bahadur and Matthew
	F. Hockin and Gordon L. Kindlmann and Lisa Nevell and Isabel Q. Wu
	and David J. Grunwald and David M. Weinstein and Greg M. Jones and
	Christopher R. Johnson and John L. VandeBerg and Mario R. Capecchi
	and Charles Keller},
  title = {Optimization of Volumetric Computed Tomography for Skeletal Analysis
	of Model Genetic Organisms},
  journal = {The Anatomical Record},
  year = {2008},
  pages = {(in press)},
  file = {vasquez08OptimizationOfVolumetricComputedTomography_.pdf:vasquez08OptimizationOfVolumetricComputedTomography_.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.04}
}

@ARTICLE{GLK:Velleman1993,
  author = {Paul F. Velleman and Leland Wilkinson},
  title = {Nominal, Ordinal, Interval, and Ratio Typologies Are Misleading},
  journal = {The American Statistician},
  year = {1993},
  volume = {47},
  pages = {65--72},
  number = {1},
  month = {Feb},
  abstract = {The psychophysicist S. S. Stevens developed a measurement scale typology
	that has dominated social statistics methodology for almost 50 years.
	During this period, it has generated considerable controversy among
	statisticians. Recently, there has been a renaissance in the use
	of Stevens's scale typology for guiding the design of statistical
	computer packages. The current use of Stevens's terminology fails
	to deal with the classical criticisms at the time it was proposed
	and ignores important developments in data analysis over the last
	several decades.},
  file = {:Users/gk/lit/pdf/velleman93NominalOrdinalIntervalAndRatioTypologiesAreMisleading.pdf:PDF},
  issn = {00031305},
  jstor_articletype = {primary_article},
  jstor_formatteddate = {Feb., 1993},
  owner = {gk},
  publisher = {American Statistical Association},
  timestamp = {2009.06.26},
  url = {http://www.jstor.org/stable/2684788}
}

@ARTICLE{GLK:Viola2006,
  author = {Ivan Viola and Miquel Feixas and Mateu Sbert and Eduard Gr{\"o}ller},
  title = {Importance-Driven Focus of Attention},
  journal = TVCG,
  year = {2006},
  volume = {12},
  pages = {933--940},
  number = {5},
  month = {October},
  file = {violaTVCG06ImportanceDrivenFocusOfAttention.pdf:violaTVCG06ImportanceDrivenFocusOfAttention.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.20}
}

@ARTICLE{GLK:Wakana2007,
  author = {Setsu Wakana and Arvind Caprihan and Martina M. Panzenboeck and James
	H. Fallon and Michele Perry and Randy L. Gollub and Kegang Hua and
	Jiangyang Zhang and Hangyi Jiang and Prachi Dubey and Ari Blitz and
	Peter van Zijl and Susumu Mori},
  title = {Reproducibility of quantitative tractography methods applied to cerebral
	white matter},
  journal = NI,
  year = {2007},
  volume = {36},
  pages = {630--644},
  number = {3},
  month = {July},
  doi = {doi:10.1016/j.neuroimage.2007.02.049},
  file = {wakanaNI07ReproducibilityOfQuantitativeTractographyMethodsAppliedToCerebralWhiteMatter.pdf:wakanaNI07ReproducibilityOfQuantitativeTractographyMethodsAppliedToCerebralWhiteMatter.pdf:PDF},
  owner = {gk},
  review = {From abstract: "This protocol provides guidelines for reproducible
	DTI-based tract-specific quantification."
	
	
	Got this from Aristotle, who cited in the context of doing a reproducibility
	study of Lauren's clustering.},
  timestamp = {2008.05.22}
}

@ARTICLE{GLK:Wakana2007a,
  author = {Setsu Wakana and Arvind Caprihan and Martina M. Panzenboeck and James
	H. Fallon and Michele Perry and Randy L. Gollub and Kegang Hua and
	Jiangyang Zhang and Hangyi Jiang and Prachi Dubey and Ari Blitz and
	Peter van Zijl and Susumu Mori},
  title = {Reproducibility of quantitative tractography methods applied to cerebral
	white matter},
  journal = NI,
  year = {2007},
  volume = {36},
  pages = {630--644},
  number = {3},
  month = {July},
  doi = {10.1016/j.neuroimage.2007.02.049},
  owner = {gk},
  timestamp = {2008.07.15}
}

@ARTICLE{GLK:walker05,
  author = {Joseph C. Walker and Julius M. Guccione and Yi Jiang and Peng Zhang
	and Arthur W. Wallace and Edward W. Hsu and Mark B. Ratcliffe},
  title = {Helical myofiber orientation after myocardial infarction and left
	ventricular surgical restoration in sheep},
  journal = {Journal of Thoracic and Cardiovascular Surgery},
  year = {2005},
  volume = {129},
  pages = {382--90},
  number = {2},
  file = {walker05HelicalMyofiberOrientationAfterMyocardialInfarctionAndLeftVentricularSurgicalRestorationInSheep.pdf:walker05HelicalMyofiberOrientationAfterMyocardialInfarctionAndLeftVentricularSurgicalRestorationInSheep.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@INPROCEEDINGS{GLK:Wandell2006,
  author = {Brian A. Wandell and Robert F. Dougherty},
  title = {Computational Neuroimaging: {M}aps and Tracks in the Human Brain},
  booktitle = {Proceedings of SPIE},
  year = {2006},
  volume = {6057},
  pages = {605701-1--12},
  doi = {10.1117/12.674141},
  file = {wandellSPIE06ComputationalNeuroimagingMapsAndTractsInTheHumanBrain.pdf:wandellSPIE06ComputationalNeuroimagingMapsAndTractsInTheHumanBrain.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Wang1998,
  author = {Yu-Ping Wang and S.L. Lee},
  title = {Scale-Space Derived From {B}-{S}plines},
  journal = PAMI,
  year = {1998},
  volume = {20},
  pages = {1040--1055},
  number = {10},
  month = {Oct},
  file = {wangPAMI98ScaleSpaceDerivedFromBSplines.pdf:wangPAMI98ScaleSpaceDerivedFromBSplines.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.06}
}

@ARTICLE{GLK:Wang1999,
  author = {Yu-Ping Wang and Ruibin Qu},
  title = {Fast Implementation of Scale-Space by Interpolatory Subdivision Scheme},
  journal = PAMI,
  year = {1999},
  volume = {21},
  pages = {933--939},
  number = {9},
  month = {Sept},
  file = {wangPAMI99FastImplementationOfScaleSpaceByInterpolatorySubdivisionScheme.pdf:wangPAMI99FastImplementationOfScaleSpaceByInterpolatorySubdivisionScheme.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.04.06}
}

@INPROCEEDINGS{GLK:wang04,
  author = {Zhizhou Wang and Baba C. Vemuri},
  title = {An affine invariant tensor dissimilarity measure and its applications
	to tensor-valued image segmentation},
  booktitle = CVPR # { 2004},
  year = {2004},
  volume = {1},
  pages = {228--233},
  file = {wangCVPR04AnAffineInvarianTensorDissimilarityMeasureAndItsApplicationsToTensorValuedImageSegmentation.pdf:wangCVPR04AnAffineInvarianTensorDissimilarityMeasureAndItsApplicationsToTensorValuedImageSegmentation.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:wangTMI04,
  author = {Zhizhou Wang and Baba C. Vemuri and Yunmei Chen and Thomas H. Mareci},
  title = {A Constrained Variational Principle for Direct Estimation and Smoothing
	of the Diffusion Tensor Field from Complex {DWI}},
  journal = TMI,
  year = {2004},
  volume = {23},
  pages = {930--939},
  number = {8},
  file = {wangTMI04AConstrainedVariationalPrincipleForDirectEstimationAndSmoothingOfTheDiffusionTensorFieldFromComplexDWI.pdf:wangTMI04AConstrainedVariationalPrincipleForDirectEstimationAndSmoothingOfTheDiffusionTensorFieldFromComplexDWI.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@ARTICLE{GLK:Wedeen2005,
  author = {Van J. Wedeen and Patric Hagmann and Wen-Yih Isaac Tseng and Timothy
	G. Reese and Robert M. Weisskoff},
  title = {Mapping complex tissue architecture with diffusion spectrum magnetic
	resonance imaging},
  journal = MRM,
  year = {2005},
  volume = {54},
  pages = {1377--1386},
  number = {6},
  doi = {10.1002/mrm.20642},
  file = {wedeenMRM05MappingComplexTissueArchitectureWithDiffusionSpectrumMagneticResonanceImaging.pdf:wedeenMRM05MappingComplexTissueArchitectureWithDiffusionSpectrumMagneticResonanceImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.21}
}

@INCOLLECTION{GLK:Weickert2005,
  author = {Joachim Weickert and Christian Feddern and Martin Welk and Bernhard
	Burgeth and Thomas Brox},
  title = {{PDE}s for Tensor Image Processing},
  booktitle = {Visualization and Image Processing of Tensor Fields},
  publisher = {Springer},
  year = {2005},
  editor = {J. Weickert and H. Hagen},
  address = {Berlin},
  owner = {gk},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:Weickert1999,
  author = {J. Weickert and S. Ishikawa and A. Imiya},
  title = {Linear scale-space has first been proposed in {J}apan},
  journal = JMIV,
  year = {1999},
  volume = {10},
  pages = {237--252},
  number = {3},
  month = {May},
  file = {weickert99LinearScaleSpaceHasFirstBeenProposedInJapan.pdf:weickert99LinearScaleSpaceHasFirstBeenProposedInJapan.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Weiskopf2003,
  author = {Daniel Weiskopf and Klaus Engel and Thomas Ertl},
  title = {Interactive Clipping Techniques for Texture-Based Volume Visualization
	and Volume Shading},
  journal = TVCG,
  year = {2003},
  volume = {9},
  pages = {298--312},
  number = {3},
  month = {July-Sept},
  file = {weiskopfTVCG03InteractiveClippingTechniquesForTextureBasedVolumeVisualizationAndVolumeShading.pdf:weiskopfTVCG03InteractiveClippingTechniquesForTextureBasedVolumeVisualizationAndVolumeShading.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.20}
}

@INBOOK{GLK:Weisstein1999,
  pages = {1652},
  title = {CRC Concise Encyclopedia of Mathematics},
  publisher = {CRC Press},
  year = {1999},
  author = {E W Weisstein},
  address = {Florida},
  comment = {single page for skewness entry},
  owner = {gk},
  timestamp = {2007.07.06}
}

@ARTICLE{GLK:welk07,
  author = {M Welk and J Weickert and F Becker and C Schn{\"o}rr and C Feddern
	and B Burgeth},
  title = {Median and Related Local Filters for Tensor-Valued Images},
  journal = {Signal Processing},
  year = {2007},
  volume = {87},
  pages = {291--308},
  file = {welkSP07MedianAndRelatedLocalFiltersForTensorValuedImages.pdf:welkSP07MedianAndRelatedLocalFiltersForTensorValuedImages.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Westin2002,
  author = {C.-F. Westin and S.E. Maier and H. Mamata and A. Nabavi and F. A.
	Jolesz and R. Kikinis},
  title = {Processing and visualization for diffusion tensor {MRI}},
  journal = MedIA,
  year = {2002},
  volume = {6},
  pages = {93--108},
  number = {2},
  file = {westinMIA02ProcessingAndVisualizationForDTMRI.pdf:westinMIA02ProcessingAndVisualizationForDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.03}
}

@INPROCEEDINGS{GLK:Westin1999,
  author = {C.-F. Westin and S. E. Maier and B. Khidhir and P. Everett and F.
	A. Jolesz and R. Kikinis},
  title = {Image Processing for Diffusion Tensor Magnetic Resonance Imaging},
  booktitle = MICCAI,
  year = {1999},
  pages = {441--452},
  file = {westinMICCAI99ImageProcessingForDTMRI.pdf:westinMICCAI99ImageProcessingForDTMRI.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.03}
}

@INPROCEEDINGS{GLK:Whitaker2000,
  author = {Ross T. Whitaker},
  title = {Reducing aliasing artifacts in iso-surfaces of binary volumes},
  booktitle = {Proc. 2000 IEEE Symp. on Volume Visualization},
  year = {2000},
  pages = {23--32},
  doi = {10.1145/353888.353893},
  file = {whitakerVV00ReducingAliasingArtifactsInIsosurfacesOfBinaryVolumes.pdf:whitakerVV00ReducingAliasingArtifactsInIsosurfacesOfBinaryVolumes.pdf:PDF},
  owner = {gk},
  timestamp = {2008.07.21}
}

@ARTICLE{GLK:wiegell00,
  author = {Mette R. Wiegell and Henrik B. W. Larsson and Van J. Wedeen},
  title = {Fiber Crossing in Human Brain Depicted with Diffusion Tensor {MR}
	Imaging},
  journal = {Radiology},
  year = {2000},
  volume = {217},
  pages = {897--903},
  number = {3},
  month = {Dec},
  file = {wiegell2000FiberCrossingInHumanBrainDepictedWithDiffusionTensorMRImaging.pdf:wiegell2000FiberCrossingInHumanBrainDepictedWithDiffusionTensorMRImaging.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:wiegell03,
  author = {Mette R. Wiegell and David S. Tuch and Henrik B. W. Larsson and Van
	J. Wedeen},
  title = {Automatic segmentation of thalamic nuclei from diffusion tensor magnetic
	resonance imaging},
  journal = NI,
  year = {2003},
  volume = {19},
  pages = {391--401},
  month = {June},
  file = {wiegellNeuroImage03AutomaticSegmentationOfThalamicNucleiFromDiffusionTensorMagneticResonanceImaging.pdf:wiegellNeuroImage03AutomaticSegmentationOfThalamicNucleiFromDiffusionTensorMagneticResonanceImaging.pdf:PDF},
  issue = {2},
  owner = {gk},
  timestamp = {2007.07.30}
}

@ARTICLE{GLK:Wijk2008,
  author = {Jarke J. van Wijk},
  title = {Unfolding the Earth: {M}yriahedral Projections},
  journal = {The Cartographic Journal},
  year = {2008},
  volume = {45},
  pages = {32--42},
  number = {1},
  month = {Feb},
  file = {:Users/gk/lit/pdf/vanWijk08UnfoldingTheEarthMyriahedralProjections.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.27}
}

@ARTICLE{GLK:Wijk2006,
  author = {Jarke J. van Wijk},
  title = {Views on Visualization},
  journal = TVCG,
  year = {2006},
  volume = {12},
  pages = {421--433},
  number = {4},
  doi = {10.1109/TVCG.2006.80},
  file = {:Users/gk/lit/pdf/vanWijkTVCG06ViewsOnVisualization.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.25}
}

@INPROCEEDINGS{GLK:Wijk2005,
  author = {Jarke J. van Wijk},
  title = {The Value of Visualization},
  booktitle = VIS,
  year = {2005},
  pages = {79--86},
  file = {:Users/gk/lit/pdf/vanWijkVis05ValueOfVisualization.pdf:PDF},
  owner = {gk},
  timestamp = {2009.06.25}
}

@ARTICLE{GLK:Williams1997,
  author = {James Williams and Lawrence Wolff},
  title = {Analysis of the Pulmonary Vascular Tree Using Differential Geometry
	Based Vector Fields},
  journal = {Computer Vision and Image Understanding},
  year = {1997},
  volume = {65},
  pages = {226--236},
  number = {2},
  month = {Feb},
  file = {williams97AnalysisOfThePulmonaryVascularTreeUsingDifferentialGeometryBasedVectorFields.pdf:williams97AnalysisOfThePulmonaryVascularTreeUsingDifferentialGeometryBasedVectorFields.pdf:PDF},
  owner = {gk},
  review = {starts with distance transforms, then math gets interesting, didn't
	read carefully},
  timestamp = {2008.04.05}
}

@INPROCEEDINGS{GLK:Wilson2002,
  author = {Brett Wilson AND Eric Lum AND Kwan-Liu Ma},
  title = {Interactive Multi-Volume Visualization},
  booktitle = {Proc. Intl. Conference on Computational Science (ICCS)-Part II},
  year = {2002},
  pages = {102--110},
  file = {wilson02InteractiveMultiVolumeVisualization.pdf:wilson02InteractiveMultiVolumeVisualization.pdf:PDF},
  owner = {gk},
  timestamp = {2008.01.20}
}

@INPROCEEDINGS{GLK:Witkin1984,
  author = {Andrew Witkin},
  title = {Scale-space filtering: {A} new approach to multi-scale description},
  booktitle = {Proc. IEEE Intl. Conference on Acoustics, Speech, and Signal Processing
	(ICASSP)},
  year = {1984},
  volume = {9},
  number = {1},
  pages = {150--153},
  month = {March},
  file = {witkin84ScaleSpaceFilteringANewApproachToMultiScaleDescription.pdf:witkin84ScaleSpaceFilteringANewApproachToMultiScaleDescription.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.22}
}

@INPROCEEDINGS{GLK:Witkin1991,
  author = {A Witkin and M Kass},
  title = {Reaction-Diffusion Textures},
  booktitle = SIGGRAPH # { 1991},
  year = {1991},
  volume = {25},
  pages = {299--308},
  file = {witkinSIGGRAPH91ReactionDiffusionTextures.pdf:witkinSIGGRAPH91ReactionDiffusionTextures.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@ARTICLE{GLK:Witkin1987,
  author = {Andrew Witkin and Demetri Terzopoulos and Michael Kass},
  title = {Signal Matching Through Scale Space},
  journal = IJCV,
  year = {1987},
  volume = {1},
  pages = {133--144},
  number = {2},
  file = {witkinIJCV87SignalMatchingThroughScaleSpace.pdf:witkinIJCV87SignalMatchingThroughScaleSpace.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.22}
}

@INPROCEEDINGS{GLK:Witkin1983,
  author = {Andrew P. Witkin},
  title = {Scale-Space Filtering},
  booktitle = {Proc. Intl. Joint Conference on Artificial Intelligence},
  year = {1983},
  pages = {1019--1021},
  address = {Karlsruhe, Germany},
  file = {witkin83ScaleSpaceFiltering.pdf:witkin83ScaleSpaceFiltering.pdf:PDF},
  keywords = {scale-space},
  owner = {gk},
  timestamp = {2008.03.22}
}

@ARTICLE{GLK:Witkin1994,
  author = {Andrew P Witkin and Paul S Heckbert},
  title = {Using Particles to Sample and Control Implicit Surfaces},
  journal = SIGGRAPH,
  year = {1994},
  volume = {28},
  pages = {269--277},
  file = {witkinSIGGRAPH94UsingParticlesToSampleAndControlImplicitSurfaces.pdf:witkinSIGGRAPH94UsingParticlesToSampleAndControlImplicitSurfaces.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@ARTICLE{GLK:Wittenbrink1996,
  author = {C M Wittenbrink and A T Pang and S K Lodha},
  title = {Glyphs for Visualizing Uncertainty in Vector Fields},
  journal = TVCG,
  year = {1996},
  volume = {2},
  pages = {266--279},
  number = {3},
  month = {Sept},
  file = {wittenbrinkTVCG96GlyphsForVisualizingUncertaintyInVectorFields.pdf:wittenbrinkTVCG96GlyphsForVisualizingUncertaintyInVectorFields.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.11}
}

@INPROCEEDINGS{GLK:Wotawa2005,
  author = {N. Wotawa and C. Lenglet and M. Roth and B. Nazarian and J.-L. Anton
	and R. Majhoub and R. Deriche and O. Faugeras},
  title = {Combined {fMRI} and {DTI} of the human low level visual cortex},
  booktitle = {Proceedings 11th Annual Meeting Human Brain Mapping},
  year = {2005},
  address = {Toronto, Canada},
  file = {wotawaHBM05CombinedfMRIandDTIOfTheHumanLowLevelVisualCortex.pdf:wotawaHBM05CombinedfMRIandDTIOfTheHumanLowLevelVisualCortex.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Wu2007,
  author = {Y-C Wu and A L Alexander},
  title = {Hybrid Diffusion Imaging},
  journal = NI,
  year = {2007},
  volume = {36},
  pages = {617--629},
  abstract = {Diffusion measurements in the human central nervous system are complex
	to characterize and a broad spectrum of methods have been proposed.
	In this study, a comprehensive diffusion encoding and analysis approach,
	hybrid diffusion imaging (HYDI), is described. The HYDI encoding
	scheme is composed of multiple concentric "shells" of constant diffusion
	weighting, which may be used to characterize the signal behavior
	with low, moderate and high diffusion weighting. HYDI facilitates
	the application of multiple data analyses strategies including diffusion
	tensor imaging (DTI), multi-exponential diffusion measurements, diffusion
	spectrum imaging (DSI) and q-ball imaging (QBI). These different
	analysis strategies may provide complementary information. DTI measures
	(mean diffusivity and fractional anisotropy) may be estimated from
	either data in the inner shells or the entire HYDI data. Fast and
	slow diffusivities were estimated using a nonlinear least squares
	bi-exponential fit on geometric means of the HYDI shells. DSI measurements
	from the entire HYDI data yield empirical model-independent diffusion
	information and are well-suited for characterizing tissue regions
	with complex diffusion behavior. DSI measurements were characterized
	using the zero displacement probability and the mean-squared displacement.
	The outermost HYDI shell was analyzed using QBI analysis to estimate
	the orientation distribution function (ODF), which is useful for
	characterizing the directions of multiple fiber groups within a voxel.
	In this study, an HYDI encoding scheme with 102 diffusion-weighted
	measurements was obtained over most of the human cerebrum in under
	30 min.},
  doi = {doi:10.1016/j.neuroimage.2007.02.050},
  file = {wuNeuroImage07HybridDiffusionImaging.pdf:wuNeuroImage07HybridDiffusionImaging.pdf:PDF},
  keywords = {diffusion},
  owner = {gk},
  timestamp = {2007.07.06}
}

@INPROCEEDINGS{GLK:Xiang2005,
  author = {Yang Xiang and A. C. S Chung and Jian Ye},
  title = {A new active contour method based on elastic interaction},
  booktitle = CVPR,
  year = {2005},
  volume = {1},
  pages = {452--457},
  month = {June},
  doi = {10.1109/CVPR.2005.37},
  file = {xiangCVPR05ANewActiveContourMethodBasedOnElasticInteraction.pdf:xiangCVPR05ANewActiveContourMethodBasedOnElasticInteraction.pdf:PDF},
  owner = {gk},
  timestamp = {2008.04.17}
}

@ARTICLE{GLK:Xie2008,
  author = {Xianghua Xie and Majid Mirmehdi},
  title = {MAC: {M}agnetostatic Active Contour Model},
  journal = PAMI,
  year = {2008},
  volume = {30},
  pages = {632--646},
  number = {4},
  file = {xiePAMI08MagnetostaticActiveContourModel.pdf:xiePAMI08MagnetostaticActiveContourModel.pdf:PDF},
  keywords = {contours, particles},
  owner = {gk},
  review = {found by reference to jalba's CPM
	
	
	but I don't think they're doing particles. but the paper is confusing
	
	
	they do point out that in CPM the external energy has to outweight
	the internal energy, which has to outweight the damping.},
  timestamp = {2008.03.26}
}

@INPROCEEDINGS{GLK:Xie2007,
  author = {Xianghua Xie and Majid Mirmehdi},
  title = {Implicit Active Model using Radial Basis Function Interpolated Level
	Sets},
  booktitle = {Proceedings of the 18th British Machine Vision Conference},
  year = {2007},
  month = {September},
  file = {xieImplicitActiveModelUsingRadialBasisFunctionInterpolatedLevelSets.pdf:xieImplicitActiveModelUsingRadialBasisFunctionInterpolatedLevelSets.pdf:PDF},
  owner = {gk},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:Xu1998,
  author = {Chenyang Xu and Jerry L. Prince},
  title = {Snakes, Shapes, and Gradient Vector Flow},
  journal = TIP,
  year = {1998},
  volume = {7},
  pages = {359--369},
  number = {3},
  file = {xuTIP98SnakesShapesAndGradientVectorFlow.pdf:xuTIP98SnakesShapesAndGradientVectorFlow.pdf:PDF},
  keywords = {contours},
  owner = {gk},
  timestamp = {2008.03.22}
}

@INPROCEEDINGS{GLK:Xu1998a,
  author = {Ming Xu and David Pycock},
  title = {The Multiscale Medial Response of Grey-level Images},
  booktitle = {Proc. British Machine Vision Conference},
  year = {1998},
  file = {xu98TheMultiscaleMedialResponseOfGrayLevelImages.pdf:xu98TheMultiscaleMedialResponseOfGrayLevelImages.pdf:PDF},
  keywords = {cores, scale-space},
  owner = {gk},
  timestamp = {2008.04.05}
}

@ARTICLE{GLK:Yamada2003,
  author = {K. Yamada and O. Kizu and H. Ito and H. Nakamura and S. Yuen and
	K. Yoshikawa and K. Shiga and T. Nishimura},
  title = {Wallerian degeneration of the inferior cerebellar peduncle depicted
	by diffusion weighted imaging},
  journal = {Journal of Neurology, Neurosurgery and Psychiatry},
  year = {2003},
  volume = {74},
  pages = {977--978},
  doi = {10.1136/jnnp.74.7.977},
  file = {yamadaJNNP03WallerianDegenerationOfTheInferiorCerebellarPeduncleDepictedByDiffusionWeightedImaging.pdf:yamadaJNNP03WallerianDegenerationOfTheInferiorCerebellarPeduncleDepictedByDiffusionWeightedImaging.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.10}
}

@ARTICLE{GLK:Yamada2007,
  author = {K. Yamada and K. Sakai and F.G.C. Hoogenraad and R. Holthuizen and
	K. Akazawa and H. Ito and H. Oouchi and S. Matsushima and T. Kubota
	and H. Sasajima and K. Mineura and T. Nishimura},
  title = {Multitensor Tractography Enables Better Depiction of Motor Pathways:
	{I}nitial Clinical Experience Using Diffusion-Weighted {MR} Imaging
	with Standard b-Value},
  journal = AJNR,
  year = {2007},
  volume = {28},
  pages = {1668--1673},
  month = {Oct},
  doi = {10.3174/ajnr.A0640},
  file = {yamadaAJNR07MultitensorTractographyEnablesBetterDepictionOfMotorPathwaysInitialClinicalExperienceUsingDWMRI_.pdf:yamadaAJNR07MultitensorTractographyEnablesBetterDepictionOfMotorPathwaysInitialClinicalExperienceUsingDWMRI_.pdf:PDF},
  owner = {gk},
  timestamp = {2008.12.06}
}

@INPROCEEDINGS{GLK:Yamakawa2000,
  author = {Soji Yamakawa and Kenji Shimada},
  title = {High Quality Anisotropic Tetrahedral Mesh Generation via Packing
	Ellipsoidal Bubbles},
  booktitle = {Proc. 9th Intl. Meshing Roundtable},
  year = {2000},
  pages = {263--273},
  file = {yamakawa00HighQualityAnisotropicTetrahedralMeshGenerationViaEllipsoidalBubblePacking.pdf:yamakawa00HighQualityAnisotropicTetrahedralMeshGenerationViaEllipsoidalBubblePacking.pdf:PDF},
  keywords = {particles},
  owner = {gk},
  timestamp = {2008.03.21}
}

@INPROCEEDINGS{GLK:Yang2006,
  author = {Ronghua Yang and Majid Mirmehdi and Xianghua Xie},
  title = {A Charged Active Contour Based on Electrostatics},
  booktitle = {Proc. Advanced Concepts for Intelligent Vision Systems (ACIVS)},
  year = {2006},
  pages = {173--184},
  address = {Antwerp, Belgium},
  month = {September},
  file = {yang06AChargedActiveContourBasedOnElectrostatics.pdf:yang06AChargedActiveContourBasedOnElectrostatics.pdf:PDF},
  keywords = {contours},
  owner = {gk},
  review = {found by reference to jalba's CPM
	
	
	but I don't think they're doing particles. but the paper is confusing},
  timestamp = {2008.03.26}
}

@ARTICLE{GLK:Yoshida2006,
  author = {Masaki Yoshida and Masahiro Ida and Thien Huong Nguyen and Marie-Therese
	Iba-Zizen and Luc Bellinger and Jean Louis Stievenart and Takehiko
	Nagao and Shinsuke Kikuchi and Takaaki Hara and Takuya Shiba and
	Kenji Kitahara and Emmanuel Alain Cabanis},
  title = {Resolution of Homonymous Visual Field Loss Documented with Functional
	Magnetic Resonance and Diffusion Tensor Imaging},
  journal = {Journal of Neuro-Ophthalmology},
  year = {2006},
  volume = {26},
  pages = {11--17},
  number = {1},
  month = {March},
  file = {yoshida06ResolutionOfHomonymousVisualFieldLossDocumentedwithFMRandDTI.pdf:yoshida06ResolutionOfHomonymousVisualFieldLossDocumentedwithFMRandDTI.pdf:PDF},
  keywords = {vaina},
  owner = {gk},
  timestamp = {2007.09.17}
}

@ARTICLE{GLK:Young1996,
  author = {SJ Young and GY Fan and D Hessler and S Lamont and TT Elvins and
	M Hadida and G Hanyzewski and JW Durkin and P Hubbard and G Kindlmann
	and E Wong and D Greenberg and S Karin and MH Ellisman},
  title = {Implementing a Collaboratory for Microscopic Digital Anatomy},
  journal = {Supercomputer Applications and High Performance Computing},
  year = {1996},
  volume = {10},
  pages = {170--181},
  number = {2/3},
  owner = {gk},
  timestamp = {2007.12.11}
}

@ARTICLE{GLK:Yushkevich2008,
  author = {Paul A. Yushkevich and Hui Zhang and Tony J. Simon and James C. Gee},
  title = {Structure-specific statistical mapping of white matter tracts},
  journal = NI,
  year = {2008},
  volume = {XX},
  pages = {XXX--XXX},
  doi = {doi:10.1016/j.neuroimage.2008.01.013},
  file = {yushkevishNI08StructureSpecificStatisticalMappingOfWhiteMatterTracts.pdf:yushkevishNI08StructureSpecificStatisticalMappingOfWhiteMatterTracts.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.03}
}

@ARTICLE{GLK:DiZenzo1986,
  author = {Silvano Di Zenzo},
  title = {A note on the gradient of a multi-image},
  journal = {Computer Vision, Graphics, and Image Processing},
  year = {1986},
  volume = {33},
  pages = {116--125},
  number = {1},
  doi = {10.1016/0734-189X(86)90223-9},
  owner = {gk},
  timestamp = {2008.01.23}
}

@ARTICLE{GLK:zhang06,
  author = {Hui Zhang and Paul A Yushkevich and Daniel C. Alexander and James
	C. Gee},
  title = {Deformable registration of diffusion tensor {MR} images with explicit
	orientation optimization},
  journal = MedIA # { (Special Issue on MICCAI 2005)},
  year = {2006},
  volume = {10},
  pages = {764-785},
  number = {5},
  month = {Oct},
  doi = {http://dx.doi.org/10.1016/j.media.2006.06.004},
  owner = {gk},
  timestamp = {2007.07.31}
}

@INPROCEEDINGS{GLK:zhang05,
  author = {Hui Zhang and Paul A. Yushkevich and James C. Gee},
  title = {Deformable registration of diffusion tensor {MR} images with explicit
	orientation optimization},
  booktitle = MICCAI # { 2005},
  year = {2005},
  volume = {3749},
  series = {Lecture Notes in Computer Science},
  pages = {172--179},
  month = {October},
  file = {zhangMICCAI05DeformableRegistrationOfDiffusionTensorMRImageswithExplicitOrientationOptimization.pdf:zhangMICCAI05DeformableRegistrationOfDiffusionTensorMRImageswithExplicitOrientationOptimization.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@INPROCEEDINGS{GLK:zhang04b,
  author = {Hui Zhang and Paul A Yushkevich and James C Gee},
  title = {Registration of Diffusion Tensor Images},
  booktitle = CVPR # { 2004},
  year = {2004},
  volume = {1},
  pages = {842--847},
  month = {June},
  file = {zhangCVPR04RegistrationOfDiffusionTensorImages.pdf:zhangCVPR04RegistrationOfDiffusionTensorImages.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.31}
}

@INPROCEEDINGS{GLK:Zhang2006,
  author = {S Zhang and S Correia and D F Tate and D H Laidlaw},
  title = {Correlating {DTI} fiber clusters with white-matter anatomy},
  booktitle = ISMRM # { 2006},
  year = {2006},
  pages = {442},
  comment = {not totally sure about the page number, got it from http://www.ismrm.org/06/Session33.htm},
  file = {zhangISMRM06CorrelatingDTIFiberClustersWithWhiteMatterAnatomy.pdf:zhangISMRM06CorrelatingDTIFiberClustersWithWhiteMatterAnatomy.pdf:PDF},
  owner = {gk},
  timestamp = {2007.07.09}
}

@ARTICLE{GLK:Zhang2003,
  author = {Song Zhang and \c{C}agatay Demiralp and David H. Laidlaw},
  title = {Visualizing diffusion tensor {MR} images using streamtubes and streamsurfaces},
  journal = TVCG,
  year = {2003},
  volume = {9},
  pages = {454--462},
  number = {4},
  month = {Oct.--Dec.},
  doi = {10.1109/TVCG.2003.1260740},
  file = {zhangTVCG03VisualizingDTMRIUsingStreamtubesAndStreamsurfaces.pdf:zhangTVCG03VisualizingDTMRIUsingStreamtubesAndStreamsurfaces.pdf:PDF},
  owner = {gk},
  timestamp = {2008.05.01}
}

@BOOK{GLK:Bankman2009,
  title = {Handbook of Medical Image Processing and Analysis},
  publisher = {Academic Press},
  year = {2009},
  editor = {I. N. Bankman},
  edition = {Second},
  owner = {gk},
  timestamp = {2009.12.16}
}

@BOOK{GLK:Hansen2004,
  title = {The Visualization Handbook},
  publisher = {Academic Press},
  year = {2004},
  editor = {Charles Hansen and CR Johnson},
  owner = {gk},
  timestamp = {2008.11.03}
}

@BOOK{GLK:Reiser2008,
  title = {Multislice {CT}},
  publisher = {Springer},
  year = {2008},
  editor = {M. Reiser and C.R. Becker and K. Nikolaou and  G. Glazer},
  edition = {3},
  owner = {gk},
  timestamp = {2009.12.17}
}

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