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Fri May 20 15:03:05 2016 UTC (5 years, 5 months ago) by jhr
File size: 2151 byte(s)
updating documentation
# Data Layout in Diderot This note describes the data layout conventions used in the Diderot implementation for images and tensors. ## Tensors The axes of tensors and tensor fields are listed from slowest to fastest (which is the opposite of nrrd files). ### Tensor construction The CFG IR expression ``` T = CONS[T_1, ..., T_d] ``` will construct a tensor with type `tensor[d_1,...,d_n,d]`, where the `T_i` tensors have the type `tensor[d_1,...,d_n]`. Thus the dimensions of a tensor are listed from slowest to fastest (the opposite of Nrrd file headers). ### Tensor indexing If we have ````diderot tensor[d_1,...,d_n] T; ```` then the expression ````diderot T[i_1,...,i_n] ```` is translated to the following address arithmetic: ```` T + i_n + d_n * (i_{n-1} + d_{n-1} * ( ... d_2 * i_1) ... ) ```` ## Differentiation The gradiant operator returns a field of higher order than its argument. For example ````diderot field#2(3)[2] F; field#1(3)[2,3] G = ∇ F; tensor[2,3] T = G(x); ```` Again, the dimensions are slowest to fastest, so T can be thought of as a two-element array of three-vectors. ## Images and Nrrd Files Image values are represented using the [Nrrd file format](http://teem.sourceforge.net/nrrd/format.html) from teem. ### `LoadVoxels` The nrrd convention is to list indices from fastest to slowest (opposite the C convention). If we are sampling a `4x4` grid of voxels from an image with type `image(2)[2])`, then the data will have the following layout in the nrrd file: ```` ... x00 y00 x10 y10 x20 y20 x30 y30 ... ... x01 y01 x11 y11 x21 y21 x31 y31 ... ... x02 y02 x12 y12 x22 y22 x32 y32 ... ... x03 y03 x13 y13 x23 y23 x33 y33 ... ```` When we load these voxels into memory, however, we swizzle them to fit the type `tensor[2,4,4]`. The following IR expression shows how the voxel tensor would be constructed: ``` CONS[ CONS[ CONS[x00, x10, x20, x30], CONS[x01, x11, x21, x31], CONS[x02, x12, x22, x32], CONS[x03, x13, x23, x33]], CONS[ CONS[y00, y10, y20, y30], CONS[y01, y11, y21, y31], CONS[y02, y12, y22, y32], CONS[y03, y13, y23, y33]] ] ```
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